Wall clock time and date at job start Tue Mar 31 2020 13:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48500 * 109.47401 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.47128 * 30.00196 * 3 2 1 6 6 H 1.48500 * 109.46858 * 150.00048 * 3 2 1 7 7 C 1.39926 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00422 * 196.78551 * 7 2 1 9 9 C 1.41411 * 119.99791 * 16.78391 * 7 2 1 10 10 C 1.40779 * 120.20725 * 205.14949 * 9 7 2 11 11 C 1.37646 * 119.88341 * 180.02562 * 10 9 7 12 12 C 1.38533 * 120.31890 * 359.73456 * 11 10 9 13 13 C 1.39241 * 120.42941 * 0.54650 * 12 11 10 14 14 N 1.39957 * 119.94577 * 179.72454 * 13 12 11 15 15 C 1.34767 * 120.00268 * 325.52230 * 14 13 12 16 16 O 1.21593 * 119.99822 * 354.85434 * 15 14 13 17 17 N 1.34773 * 120.00562 * 174.85195 * 15 14 13 18 18 C 1.46501 * 120.00729 * 180.02562 * 17 15 14 19 19 C 1.52991 * 109.47540 * 180.02562 * 18 17 15 20 20 H 1.09001 * 112.50962 * 314.65984 * 19 18 17 21 21 C 1.52889 * 113.16874 * 184.83540 * 19 18 17 22 22 C 1.51592 * 84.67346 * 244.71667 * 21 19 18 23 23 C 1.38954 * 145.53475 * 179.97438 * 22 21 19 24 24 C 1.37977 * 120.32577 * 180.02562 * 23 22 21 25 25 C 1.38244 * 120.17696 * 359.97438 * 24 23 22 26 26 C 1.38175 * 119.74853 * 0.04340 * 25 24 23 27 27 C 1.38240 * 120.12413 * 359.95490 * 26 25 24 28 28 C 1.38277 * 120.10520 * 359.44655 * 13 12 11 29 29 H 0.97002 * 120.00066 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.06357 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.83636 * 179.97438 * 11 10 9 32 32 H 1.07996 * 119.78443 * 180.27054 * 12 11 10 33 33 H 0.97008 * 119.99842 * 145.52220 * 14 13 12 34 34 H 0.97009 * 119.99920 * 0.02562 * 17 15 14 35 35 H 1.08999 * 109.47277 * 59.99408 * 18 17 15 36 36 H 1.09002 * 109.46776 * 299.99954 * 18 17 15 37 37 H 1.08994 * 113.98762 * 358.66360 * 21 19 18 38 38 H 1.08994 * 113.98774 * 130.76982 * 21 19 18 39 39 H 1.08002 * 119.83454 * 0.07010 * 23 22 21 40 40 H 1.07993 * 119.91238 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.12751 * 180.02562 * 25 24 23 42 42 H 1.07996 * 119.93872 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.15612 * 180.29445 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2695 9 6 1.3461 -2.4102 -0.3547 10 6 1.8187 -3.6478 0.1216 11 6 1.1697 -4.8102 -0.2277 12 6 0.0496 -4.7682 -1.0419 13 6 -0.4258 -3.5520 -1.5251 14 7 -1.5549 -3.5218 -2.3516 15 6 -1.7790 -4.5250 -3.2231 16 8 -0.9544 -5.4082 -3.3587 17 7 -2.9172 -4.5494 -3.9445 18 6 -3.1611 -5.6402 -4.8916 19 6 -4.5137 -5.4296 -5.5748 20 1 -5.2991 -5.1563 -4.8701 21 6 -4.9080 -6.5835 -6.4970 22 6 -4.7968 -5.5519 -7.6021 23 6 -4.9107 -5.3186 -8.9672 24 6 -4.6706 -4.0609 -9.4814 25 6 -4.3152 -3.0226 -8.6407 26 6 -4.2000 -3.2490 -7.2825 27 6 -4.4403 -4.5086 -6.7662 28 6 0.2125 -2.3734 -1.1852 29 1 -0.4850 0.8401 -0.0004 30 1 2.6890 -3.6851 0.7600 31 1 1.5331 -5.7592 0.1378 32 1 -0.4556 -5.6852 -1.3070 33 1 -2.1761 -2.7788 -2.2971 34 1 -3.5750 -3.8446 -3.8367 35 1 -3.1674 -6.5904 -4.3576 36 1 -2.3723 -5.6514 -5.6438 37 1 -4.1641 -7.3781 -6.5554 38 1 -5.9204 -6.9535 -6.3358 39 1 -5.1892 -6.1255 -9.6289 40 1 -4.7607 -3.8871 -10.5435 41 1 -4.1279 -2.0385 -9.0440 42 1 -3.9229 -2.4400 -6.6229 43 1 -0.1583 -1.4291 -1.5557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661888406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:10 Heat of formation + Delta-G solvation = 53.972412 kcal Electronic energy + Delta-G solvation = -25174.815366 eV Core-core repulsion = 21571.663023 eV Total energy + Delta-G solvation = -3603.152344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96725 -39.73408 -37.39646 -36.29244 -34.26000 -33.92858 -33.17270 -30.99514 -29.51177 -28.99789 -27.80609 -26.20912 -25.18770 -23.60293 -21.72194 -21.38502 -21.04803 -20.31033 -19.69435 -17.95876 -17.37643 -16.99594 -16.37789 -15.62866 -15.36395 -15.23827 -14.78879 -14.66347 -14.50189 -14.27795 -13.85556 -13.47460 -13.29359 -13.05351 -12.78650 -12.63411 -12.40045 -12.28788 -12.07845 -11.72935 -11.59085 -11.22963 -11.13111 -11.11713 -10.70206 -10.61980 -10.55533 -10.02814 -9.68657 -9.51901 -9.20948 -9.06480 -8.95694 -8.92019 -8.80802 -7.32909 -6.94558 -6.64213 -4.33273 1.06991 1.15342 2.75096 2.92539 3.04976 3.08710 3.12435 3.27113 3.51068 3.74259 3.82304 3.95816 4.13901 4.27177 4.60130 4.68151 4.72349 4.80532 4.87097 4.98438 5.27538 5.36260 5.38896 5.52264 5.61181 5.63761 5.72535 5.85987 5.91962 6.14780 6.26656 6.30924 6.47423 6.59861 6.72590 6.74724 6.75744 6.84774 7.04073 7.10163 7.26185 7.43071 7.69313 7.88452 8.02795 8.08253 8.31351 8.50648 8.64889 8.93068 8.96219 9.10591 10.22472 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.002584 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.762707 B =10831.232298 C =12207.915616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.229 4.229 11 C -0.087 4.087 12 C -0.226 4.226 13 C 0.164 3.836 14 N -0.679 5.679 15 C 0.700 3.300 16 O -0.575 6.575 17 N -0.750 5.750 18 C 0.155 3.845 19 C -0.053 4.053 20 H 0.101 0.899 21 C -0.066 4.066 22 C -0.131 4.131 23 C -0.100 4.100 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.085 4.085 27 C -0.125 4.125 28 C -0.184 4.184 29 H 0.278 0.722 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.398 0.602 34 H 0.394 0.606 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 -5.559 -14.360 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.249 4.249 11 C -0.105 4.105 12 C -0.247 4.247 13 C 0.072 3.928 14 N -0.325 5.325 15 C 0.400 3.600 16 O -0.451 6.451 17 N -0.407 5.407 18 C 0.031 3.969 19 C -0.072 4.072 20 H 0.119 0.881 21 C -0.103 4.103 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.103 4.103 27 C -0.125 4.125 28 C -0.206 4.206 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.232 0.768 34 H 0.227 0.773 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.463 -6.237 -14.497 20.744 hybrid contribution -0.331 1.668 -0.060 1.702 sum -13.794 -4.569 -14.557 20.568 Atomic orbital electron populations 1.69822 1.07493 1.28853 1.36508 1.25861 0.94739 1.01145 0.92260 0.86333 0.80533 0.80724 0.79219 1.19404 1.20435 1.18657 1.19530 0.97771 0.90992 1.41063 0.90395 1.17352 0.90579 0.92158 0.88176 1.21030 1.03886 0.92904 1.07098 1.20418 0.95648 0.96578 0.97907 1.20323 1.02097 0.95674 1.06584 1.17399 0.87583 0.94985 0.92830 1.42616 1.26894 1.23745 1.39209 1.15952 0.81931 0.83026 0.79063 1.90930 1.45512 1.38936 1.69769 1.45067 1.21263 1.29289 1.45096 1.21013 0.94650 0.90083 0.91180 1.21465 0.98133 0.92904 0.94656 0.88133 1.21775 1.02969 0.95533 0.90037 1.22370 0.99797 0.97274 0.93623 1.20533 1.00619 0.96990 0.93710 1.20968 1.00303 0.92756 0.99728 1.21048 1.00200 0.99294 0.93019 1.20259 0.99539 0.95487 0.95034 1.21649 0.99588 0.93858 0.97420 1.21038 0.99945 0.95333 1.04290 0.91151 0.88908 0.89085 0.88033 0.76833 0.77312 0.90873 0.91361 0.88276 0.88438 0.86578 0.85846 0.85569 0.86244 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.25 10.94 55.55 0.61 -19.64 16 2 C 0.08 1.91 5.16 -17.35 -0.09 1.82 16 3 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.35 9.05 -37.74 -0.34 -12.70 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.12 3.25 5.57 -106.85 -0.59 2.66 16 10 C -0.23 -5.81 9.79 -38.84 -0.38 -6.19 16 11 C -0.09 -2.08 10.02 -39.69 -0.40 -2.48 16 12 C -0.23 -5.52 8.66 -39.10 -0.34 -5.86 16 13 C 0.16 3.94 6.25 -83.76 -0.52 3.42 16 14 N -0.68 -13.17 5.34 -14.27 -0.08 -13.25 16 15 C 0.70 13.08 8.29 -86.93 -0.72 12.35 16 16 O -0.58 -13.10 14.09 5.28 0.07 -13.02 16 17 N -0.75 -9.93 5.56 -65.23 -0.36 -10.30 16 18 C 0.16 1.80 5.36 -4.05 -0.02 1.78 16 19 C -0.05 -0.46 3.74 -95.44 -0.36 -0.82 16 20 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.07 -0.49 8.02 -27.50 -0.22 -0.71 16 22 C -0.13 -1.25 7.32 -107.51 -0.79 -2.03 16 23 C -0.10 -0.90 10.05 -39.41 -0.40 -1.30 16 24 C -0.12 -1.04 10.03 -39.67 -0.40 -1.43 16 25 C -0.12 -1.08 10.06 -39.60 -0.40 -1.48 16 26 C -0.09 -0.87 10.04 -39.60 -0.40 -1.27 16 27 C -0.13 -1.28 7.00 -104.55 -0.73 -2.01 16 28 C -0.18 -4.77 8.60 -38.69 -0.33 -5.10 16 29 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 30 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.10 2.47 6.48 -52.49 -0.34 2.13 16 33 H 0.40 6.49 8.84 -40.82 -0.36 6.12 16 34 H 0.39 4.09 8.49 -40.82 -0.35 3.75 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 37 H 0.10 0.67 7.99 -51.93 -0.41 0.25 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 3.17 6.17 -52.48 -0.32 2.85 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -32.06 364.80 -12.27 -44.34 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.56 Total: 14.07 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -7.43 Total: -21.34 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.17 Total: -43.18 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.06 -12.27 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661888406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.308 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds