Wall clock time and date at job start Tue Mar 31 2020 13:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48500 * 109.47401 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.47128 * 30.00196 * 3 2 1 6 6 H 1.48500 * 109.46858 * 150.00048 * 3 2 1 7 7 C 1.39926 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00422 * 196.78551 * 7 2 1 9 9 C 1.41411 * 119.99791 * 16.78391 * 7 2 1 10 10 C 1.40779 * 120.20725 * 205.14949 * 9 7 2 11 11 C 1.37646 * 119.88341 * 180.02562 * 10 9 7 12 12 C 1.38533 * 120.31890 * 359.73456 * 11 10 9 13 13 C 1.39241 * 120.42941 * 0.54650 * 12 11 10 14 14 N 1.39957 * 119.94577 * 179.72454 * 13 12 11 15 15 C 1.34767 * 120.00268 * 325.52230 * 14 13 12 16 16 O 1.21593 * 119.99822 * 354.85434 * 15 14 13 17 17 N 1.34773 * 120.00562 * 174.85195 * 15 14 13 18 18 C 1.46501 * 120.00729 * 180.02562 * 17 15 14 19 19 C 1.52991 * 109.47540 * 180.02562 * 18 17 15 20 20 H 1.09001 * 112.50962 * 314.65984 * 19 18 17 21 21 C 1.52889 * 113.16874 * 184.83540 * 19 18 17 22 22 C 1.51592 * 84.67346 * 244.71667 * 21 19 18 23 23 C 1.38954 * 145.53475 * 179.97438 * 22 21 19 24 24 C 1.37977 * 120.32577 * 180.02562 * 23 22 21 25 25 C 1.38244 * 120.17696 * 359.97438 * 24 23 22 26 26 C 1.38175 * 119.74853 * 0.04340 * 25 24 23 27 27 C 1.38240 * 120.12413 * 359.95490 * 26 25 24 28 28 C 1.38277 * 120.10520 * 359.44655 * 13 12 11 29 29 H 0.97002 * 120.00066 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.06357 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.83636 * 179.97438 * 11 10 9 32 32 H 1.07996 * 119.78443 * 180.27054 * 12 11 10 33 33 H 0.97008 * 119.99842 * 145.52220 * 14 13 12 34 34 H 0.97009 * 119.99920 * 0.02562 * 17 15 14 35 35 H 1.08999 * 109.47277 * 59.99408 * 18 17 15 36 36 H 1.09002 * 109.46776 * 299.99954 * 18 17 15 37 37 H 1.08994 * 113.98762 * 358.66360 * 21 19 18 38 38 H 1.08994 * 113.98774 * 130.76982 * 21 19 18 39 39 H 1.08002 * 119.83454 * 0.07010 * 23 22 21 40 40 H 1.07993 * 119.91238 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.12751 * 180.02562 * 25 24 23 42 42 H 1.07996 * 119.93872 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.15612 * 180.29445 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2695 9 6 1.3461 -2.4102 -0.3547 10 6 1.8187 -3.6478 0.1216 11 6 1.1697 -4.8102 -0.2277 12 6 0.0496 -4.7682 -1.0419 13 6 -0.4258 -3.5520 -1.5251 14 7 -1.5549 -3.5218 -2.3516 15 6 -1.7790 -4.5250 -3.2231 16 8 -0.9544 -5.4082 -3.3587 17 7 -2.9172 -4.5494 -3.9445 18 6 -3.1611 -5.6402 -4.8916 19 6 -4.5137 -5.4296 -5.5748 20 1 -5.2991 -5.1563 -4.8701 21 6 -4.9080 -6.5835 -6.4970 22 6 -4.7968 -5.5519 -7.6021 23 6 -4.9107 -5.3186 -8.9672 24 6 -4.6706 -4.0609 -9.4814 25 6 -4.3152 -3.0226 -8.6407 26 6 -4.2000 -3.2490 -7.2825 27 6 -4.4403 -4.5086 -6.7662 28 6 0.2125 -2.3734 -1.1852 29 1 -0.4850 0.8401 -0.0004 30 1 2.6890 -3.6851 0.7600 31 1 1.5331 -5.7592 0.1378 32 1 -0.4556 -5.6852 -1.3070 33 1 -2.1761 -2.7788 -2.2971 34 1 -3.5750 -3.8446 -3.8367 35 1 -3.1674 -6.5904 -4.3576 36 1 -2.3723 -5.6514 -5.6438 37 1 -4.1641 -7.3781 -6.5554 38 1 -5.9204 -6.9535 -6.3358 39 1 -5.1892 -6.1255 -9.6289 40 1 -4.7607 -3.8871 -10.5435 41 1 -4.1279 -2.0385 -9.0440 42 1 -3.9229 -2.4400 -6.6229 43 1 -0.1583 -1.4291 -1.5557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661888406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:09 Heat of formation + Delta-G solvation = 36.555493 kcal Electronic energy + Delta-G solvation = -25175.570620 eV Core-core repulsion = 21571.663023 eV Total energy + Delta-G solvation = -3603.907598 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77902 -41.17641 -39.15679 -37.17409 -35.96200 -35.27478 -34.88868 -31.69973 -31.43354 -30.46678 -28.94536 -27.19591 -27.02582 -24.39510 -23.19274 -22.89451 -22.27698 -21.61566 -20.82960 -19.43033 -19.13881 -17.86436 -17.69018 -17.04628 -16.67456 -16.40457 -16.26645 -16.01246 -15.72109 -15.51545 -15.08433 -14.70054 -14.54652 -14.44397 -14.15147 -13.92644 -13.53512 -13.38624 -13.07280 -13.04653 -12.85104 -12.80181 -12.57862 -12.46009 -12.32638 -11.84243 -11.81101 -11.55885 -11.33017 -11.20657 -11.03956 -10.76095 -10.14072 -9.75910 -9.53193 -9.30602 -8.80747 -8.50912 -6.33367 0.38361 0.45177 0.91284 1.07553 1.40922 1.53072 1.53926 1.69118 2.17041 2.23681 2.79010 2.81645 3.13117 3.24527 3.49516 3.69941 3.75019 3.82922 4.19377 4.21795 4.26513 4.46781 4.59978 4.66409 4.71985 4.75312 4.76918 4.86641 4.88247 4.99310 5.12906 5.16083 5.17695 5.19502 5.23405 5.36232 5.43593 5.48002 5.58707 5.76870 5.80322 5.83686 6.02001 6.08592 6.11295 6.19004 6.40547 6.70054 6.95908 6.99175 7.09492 7.57397 8.36311 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.002584 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.762707 B =10831.232298 C =12207.915616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.092 3.908 10 C -0.249 4.249 11 C -0.085 4.085 12 C -0.239 4.239 13 C 0.171 3.829 14 N -0.674 5.674 15 C 0.698 3.302 16 O -0.617 6.617 17 N -0.726 5.726 18 C 0.156 3.844 19 C -0.043 4.043 20 H 0.119 0.881 21 C -0.055 4.055 22 C -0.143 4.143 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.106 4.106 27 C -0.149 4.149 28 C -0.205 4.205 29 H 0.288 0.712 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.412 0.588 34 H 0.410 0.590 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.305 -5.317 -15.226 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.094 0.906 9 C 0.089 3.911 10 C -0.269 4.269 11 C -0.103 4.103 12 C -0.261 4.261 13 C 0.077 3.923 14 N -0.321 5.321 15 C 0.399 3.601 16 O -0.497 6.497 17 N -0.383 5.383 18 C 0.033 3.967 19 C -0.061 4.061 20 H 0.137 0.863 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.124 4.124 27 C -0.149 4.149 28 C -0.227 4.227 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.249 0.751 34 H 0.247 0.753 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.137 0.863 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.838 -5.990 -15.386 22.199 hybrid contribution -0.001 1.551 0.138 1.557 sum -14.839 -4.439 -15.249 21.735 Atomic orbital electron populations 1.69853 1.08725 1.30416 1.35758 1.26686 0.95599 1.04197 0.91232 0.85219 0.79110 0.76100 0.79359 1.18933 1.19075 1.18460 1.19775 0.97985 0.92169 1.42818 0.90641 1.17767 0.91405 0.93143 0.88791 1.21205 1.04716 0.93024 1.07982 1.20733 0.95098 0.97430 0.97068 1.20489 1.02632 0.95848 1.07088 1.17433 0.88219 0.94265 0.92410 1.42460 1.26076 1.24695 1.38897 1.16099 0.82757 0.82136 0.79114 1.90898 1.47320 1.40363 1.71072 1.44912 1.19631 1.30008 1.43762 1.21118 0.95860 0.89484 0.90286 1.21432 0.96640 0.93468 0.94571 0.86300 1.21852 1.04483 0.94824 0.88086 1.22743 0.99563 0.97880 0.94156 1.20860 1.00384 0.97738 0.94011 1.21308 0.99495 0.92551 1.00885 1.21329 1.00171 1.00358 0.92883 1.20478 1.00318 0.95853 0.95760 1.21905 1.00389 0.94208 0.98434 1.20982 1.00679 0.95613 1.05415 0.90122 0.88057 0.86259 0.87945 0.75128 0.75331 0.90587 0.93385 0.87649 0.86027 0.84754 0.83681 0.84121 0.86268 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.66 10.94 21.82 0.24 -41.42 16 2 C 0.04 1.89 5.16 85.25 0.44 2.33 16 3 Si 0.98 37.96 29.59 68.60 2.03 39.99 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.50 -27.08 9.05 23.46 0.21 -26.87 16 8 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 9 C 0.09 5.09 5.57 -21.31 -0.12 4.97 16 10 C -0.25 -12.86 9.79 22.75 0.22 -12.64 16 11 C -0.08 -4.07 10.02 22.20 0.22 -3.85 16 12 C -0.24 -11.79 8.66 22.58 0.20 -11.60 16 13 C 0.17 8.29 6.25 38.09 0.24 8.53 16 14 N -0.67 -26.13 5.34 -317.34 -1.69 -27.82 16 15 C 0.70 25.90 8.29 179.06 1.48 27.39 16 16 O -0.62 -28.26 14.09 -4.01 -0.06 -28.32 16 17 N -0.73 -18.50 5.56 -478.55 -2.66 -21.17 16 18 C 0.16 3.46 5.36 86.38 0.46 3.92 16 19 C -0.04 -0.66 3.74 -13.92 -0.05 -0.72 16 20 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 21 C -0.06 -0.69 8.02 30.10 0.24 -0.45 16 22 C -0.14 -2.50 7.32 -21.73 -0.16 -2.66 16 23 C -0.11 -1.83 10.05 22.38 0.22 -1.61 16 24 C -0.12 -1.98 10.03 22.21 0.22 -1.75 16 25 C -0.13 -2.28 10.06 22.26 0.22 -2.05 16 26 C -0.11 -2.12 10.04 22.26 0.22 -1.90 16 27 C -0.15 -2.88 7.00 -19.82 -0.14 -3.02 16 28 C -0.20 -10.86 8.60 22.85 0.20 -10.66 16 29 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 30 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 31 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.10 5.00 6.48 -2.91 -0.02 4.99 16 33 H 0.41 13.28 8.84 -92.70 -0.82 12.46 16 34 H 0.41 7.88 8.49 -92.70 -0.79 7.09 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.29 8.03 -2.39 -0.02 1.27 16 37 H 0.11 1.19 7.99 -2.39 -0.02 1.17 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.11 6.07 6.17 -2.91 -0.02 6.05 16 Total: -1.00 -70.24 364.80 1.65 -68.59 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -0.55 Total: 42.76 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 4.34 Total: -32.62 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -4.12 Total: -90.41 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.06 Total: -28.32 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -70.24 1.65 -68.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661888406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.148 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds