Wall clock time and date at job start Tue Mar 31 2020 13:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99980 * 2 1 4 4 H 1.48495 * 109.47190 * 239.99476 * 3 2 1 5 5 H 1.48498 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47088 * 119.99745 * 3 2 1 7 7 C 1.39933 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 196.78074 * 7 2 1 9 9 C 1.41404 * 119.99995 * 16.79271 * 7 2 1 10 10 C 1.40777 * 120.20949 * 205.14535 * 9 7 2 11 11 C 1.37645 * 119.88641 * 180.02562 * 10 9 7 12 12 C 1.38534 * 120.31774 * 359.72857 * 11 10 9 13 13 C 1.39246 * 120.42860 * 0.55244 * 12 11 10 14 14 N 1.39959 * 119.94686 * 179.72248 * 13 12 11 15 15 C 1.34779 * 120.00076 * 325.52323 * 14 13 12 16 16 O 1.21592 * 119.99459 * 354.84972 * 15 14 13 17 17 N 1.34775 * 119.99837 * 174.84964 * 15 14 13 18 18 C 1.46507 * 119.99560 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.46815 * 179.97438 * 18 17 15 20 20 H 1.09004 * 112.88632 * 46.67186 * 19 18 17 21 21 C 1.52262 * 113.20242 * 178.03096 * 19 18 17 22 22 C 1.50560 * 87.23078 * 114.71922 * 21 19 18 23 23 C 1.38808 * 147.30461 * 179.57207 * 22 21 19 24 24 C 1.38072 * 120.08942 * 179.74662 * 23 22 21 25 25 C 1.38230 * 119.98377 * 0.25866 * 24 23 22 26 26 C 1.38077 * 119.97790 * 359.97438 * 25 24 23 27 27 C 1.37720 * 92.76827 * 359.79999 * 22 21 19 28 28 C 1.38274 * 120.10441 * 359.44659 * 13 12 11 29 29 H 0.96998 * 120.00556 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.05839 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.84315 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.78383 * 180.27398 * 12 11 10 33 33 H 0.97001 * 120.00000 * 145.52027 * 14 13 12 34 34 H 0.96993 * 120.00602 * 0.02562 * 17 15 14 35 35 H 1.08998 * 109.46835 * 59.99964 * 18 17 15 36 36 H 1.09003 * 109.47219 * 300.00552 * 18 17 15 37 37 H 1.08998 * 113.97871 * 0.07205 * 21 19 18 38 38 H 1.09003 * 113.27918 * 229.26253 * 21 19 18 39 39 H 1.07995 * 119.95403 * 0.02562 * 23 22 21 40 40 H 1.08001 * 120.00256 * 180.23626 * 24 23 22 41 41 H 1.07991 * 120.01081 * 180.02562 * 25 24 23 42 42 H 1.07996 * 119.94857 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.15478 * 180.30254 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3527 10 6 1.8186 -3.6477 0.1246 11 6 1.1696 -4.8104 -0.2239 12 6 0.0495 -4.7691 -1.0380 13 6 -0.4258 -3.5531 -1.5223 14 7 -1.5549 -3.5236 -2.3488 15 6 -1.7791 -4.5276 -3.2196 16 8 -0.9544 -5.4109 -3.3544 17 7 -2.9173 -4.5524 -3.9409 18 6 -3.1607 -5.6435 -4.8879 19 6 -4.5140 -5.4341 -5.5702 20 1 -4.6571 -4.4129 -5.9235 21 6 -4.8322 -6.4991 -6.6109 22 6 -5.9685 -6.9260 -5.7200 23 6 -7.0377 -7.7889 -5.5231 24 6 -7.8031 -7.6927 -4.3780 25 6 -7.5079 -6.7325 -3.4285 26 6 -6.4475 -5.8704 -3.6255 27 6 -5.6777 -5.9658 -4.7765 28 6 0.2125 -2.3743 -1.1833 29 1 -0.4851 0.8400 -0.0004 30 1 2.6889 -3.6845 0.7631 31 1 1.5329 -5.7592 0.1423 32 1 -0.4557 -5.6863 -1.3024 33 1 -2.1761 -2.7806 -2.2949 34 1 -3.5750 -3.8476 -3.8337 35 1 -3.1666 -6.5936 -4.3537 36 1 -2.3718 -5.6545 -5.6401 37 1 -4.0562 -7.2564 -6.7213 38 1 -5.1579 -6.0851 -7.5652 39 1 -7.2685 -8.5395 -6.2645 40 1 -8.6324 -8.3674 -4.2244 41 1 -8.1060 -6.6571 -2.5325 42 1 -6.2176 -5.1201 -2.8836 43 1 -0.1584 -1.4303 -1.5545 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661888407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:13 Heat of formation + Delta-G solvation = 53.821476 kcal Electronic energy + Delta-G solvation = -25157.882580 eV Core-core repulsion = 21554.723691 eV Total energy + Delta-G solvation = -3603.158889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06509 -39.74163 -37.39709 -36.32218 -34.27386 -33.94872 -33.17679 -30.98838 -29.51349 -29.02266 -27.81252 -26.19554 -25.18618 -23.59516 -21.74566 -21.38503 -21.04574 -20.30101 -19.70425 -17.96788 -17.37722 -17.01851 -16.36562 -15.72343 -15.37121 -15.09570 -14.85847 -14.66317 -14.57263 -14.28413 -13.76602 -13.59211 -13.26825 -13.02821 -12.80801 -12.55072 -12.38523 -12.31738 -12.14888 -11.75339 -11.59713 -11.20947 -11.09507 -11.07301 -10.71008 -10.65826 -10.61064 -10.05115 -9.68523 -9.52050 -9.20379 -9.05635 -8.95805 -8.92266 -8.82400 -7.32826 -6.94464 -6.64191 -4.33209 1.07548 1.13563 2.75385 2.93132 3.05475 3.07340 3.11200 3.27824 3.50370 3.74131 3.86833 3.95642 4.14709 4.27929 4.60261 4.67830 4.72831 4.79964 4.86521 4.97393 5.29451 5.34452 5.39364 5.51835 5.61163 5.64487 5.72206 5.85423 5.92080 6.13903 6.26169 6.31112 6.47290 6.59869 6.72737 6.74411 6.75796 6.84770 7.04101 7.10100 7.26107 7.43118 7.69341 7.88420 8.02998 8.08094 8.31390 8.50542 8.64685 8.92953 8.96229 9.10529 10.22493 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002343 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.966627 B =11948.989315 C =12328.432631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.121 3.879 10 C -0.229 4.229 11 C -0.086 4.086 12 C -0.226 4.226 13 C 0.165 3.835 14 N -0.679 5.679 15 C 0.700 3.300 16 O -0.575 6.575 17 N -0.750 5.750 18 C 0.157 3.843 19 C -0.057 4.057 20 H 0.104 0.896 21 C -0.065 4.065 22 C -0.131 4.131 23 C -0.097 4.097 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.088 4.088 27 C -0.124 4.124 28 C -0.184 4.184 29 H 0.278 0.722 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.398 0.602 34 H 0.394 0.606 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.959 -7.809 -11.158 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.249 4.249 11 C -0.105 4.105 12 C -0.247 4.247 13 C 0.072 3.928 14 N -0.325 5.325 15 C 0.400 3.600 16 O -0.451 6.451 17 N -0.407 5.407 18 C 0.033 3.967 19 C -0.075 4.075 20 H 0.122 0.878 21 C -0.102 4.102 22 C -0.131 4.131 23 C -0.115 4.115 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.106 4.106 27 C -0.124 4.124 28 C -0.206 4.206 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.232 0.768 34 H 0.227 0.773 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.434 -8.501 -11.273 20.918 hybrid contribution -0.489 1.481 0.231 1.576 sum -15.923 -7.020 -11.043 20.610 Atomic orbital electron populations 1.69808 1.07498 1.28975 1.36404 1.25862 0.94738 1.01138 0.92249 0.86391 0.80144 0.80340 0.79947 1.18913 1.20470 1.19058 1.19490 0.97744 0.90993 1.41168 0.90446 1.17341 0.90577 0.92137 0.88170 1.21026 1.03900 0.92905 1.07109 1.20416 0.95643 0.96573 0.97895 1.20325 1.02089 0.95686 1.06587 1.17397 0.87574 0.94977 0.92838 1.42618 1.26905 1.23723 1.39226 1.15954 0.81938 0.83000 0.79076 1.90931 1.45585 1.38903 1.69714 1.45056 1.21145 1.29151 1.45367 1.20982 0.94085 0.90230 0.91451 1.21344 0.91697 1.00496 0.93996 0.87758 1.21453 0.94683 0.96955 0.97097 1.21828 0.96430 0.96600 0.98197 1.20411 0.94537 0.98805 0.97755 1.20994 0.99758 0.98831 0.94044 1.21013 0.97500 0.95771 0.99425 1.20496 0.94546 0.99363 0.96217 1.21776 0.97144 0.98380 0.95101 1.21036 0.99954 0.95323 1.04313 0.91086 0.88914 0.89101 0.88065 0.76834 0.77310 0.91344 0.90832 0.88501 0.88788 0.86460 0.85759 0.85671 0.86293 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.23 10.94 55.55 0.61 -19.63 16 2 C 0.08 1.91 5.16 -17.35 -0.09 1.83 16 3 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.35 9.06 -37.74 -0.34 -12.69 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.12 3.26 5.57 -106.85 -0.59 2.67 16 10 C -0.23 -5.82 9.79 -38.84 -0.38 -6.20 16 11 C -0.09 -2.08 10.02 -39.69 -0.40 -2.48 16 12 C -0.23 -5.55 8.66 -39.10 -0.34 -5.89 16 13 C 0.16 3.95 6.25 -83.76 -0.52 3.42 16 14 N -0.68 -13.16 5.34 -14.27 -0.08 -13.24 16 15 C 0.70 13.06 8.29 -86.92 -0.72 12.34 16 16 O -0.57 -13.08 14.09 5.28 0.07 -13.01 16 17 N -0.75 -9.91 5.56 -65.22 -0.36 -10.27 16 18 C 0.16 1.81 5.37 -4.04 -0.02 1.79 16 19 C -0.06 -0.49 3.91 -92.51 -0.36 -0.85 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.06 -0.48 7.76 -28.62 -0.22 -0.71 16 22 C -0.13 -1.24 7.42 -104.96 -0.78 -2.02 16 23 C -0.10 -0.86 10.06 -39.43 -0.40 -1.26 16 24 C -0.12 -1.00 10.04 -39.65 -0.40 -1.40 16 25 C -0.12 -1.08 10.04 -39.64 -0.40 -1.48 16 26 C -0.09 -0.89 10.06 -39.43 -0.40 -1.29 16 27 C -0.12 -1.25 6.86 -104.96 -0.72 -1.97 16 28 C -0.18 -4.77 8.60 -38.69 -0.33 -5.10 16 29 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 30 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.10 2.49 6.48 -52.49 -0.34 2.15 16 33 H 0.40 6.47 8.83 -40.82 -0.36 6.11 16 34 H 0.39 4.08 8.49 -40.82 -0.35 3.73 16 35 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.67 7.98 -51.93 -0.41 0.25 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.12 3.17 6.17 -52.48 -0.32 2.84 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -31.99 364.69 -12.26 -44.25 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -5.56 Total: 14.08 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -7.41 Total: -21.28 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.17 Total: -43.13 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.07 Total: -13.01 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.99 -12.26 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661888407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.068 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds