Wall clock time and date at job start Tue Mar 31 2020 13:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99980 * 2 1 4 4 H 1.48495 * 109.47190 * 239.99476 * 3 2 1 5 5 H 1.48498 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47088 * 119.99745 * 3 2 1 7 7 C 1.39933 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 196.78074 * 7 2 1 9 9 C 1.41404 * 119.99995 * 16.79271 * 7 2 1 10 10 C 1.40777 * 120.20949 * 205.14535 * 9 7 2 11 11 C 1.37645 * 119.88641 * 180.02562 * 10 9 7 12 12 C 1.38534 * 120.31774 * 359.72857 * 11 10 9 13 13 C 1.39246 * 120.42860 * 0.55244 * 12 11 10 14 14 N 1.39959 * 119.94686 * 179.72248 * 13 12 11 15 15 C 1.34779 * 120.00076 * 325.52323 * 14 13 12 16 16 O 1.21592 * 119.99459 * 354.84972 * 15 14 13 17 17 N 1.34775 * 119.99837 * 174.84964 * 15 14 13 18 18 C 1.46507 * 119.99560 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.46815 * 179.97438 * 18 17 15 20 20 H 1.09004 * 112.88632 * 46.67186 * 19 18 17 21 21 C 1.52262 * 113.20242 * 178.03096 * 19 18 17 22 22 C 1.50560 * 87.23078 * 114.71922 * 21 19 18 23 23 C 1.38808 * 147.30461 * 179.57207 * 22 21 19 24 24 C 1.38072 * 120.08942 * 179.74662 * 23 22 21 25 25 C 1.38230 * 119.98377 * 0.25866 * 24 23 22 26 26 C 1.38077 * 119.97790 * 359.97438 * 25 24 23 27 27 C 1.37720 * 92.76827 * 359.79999 * 22 21 19 28 28 C 1.38274 * 120.10441 * 359.44659 * 13 12 11 29 29 H 0.96998 * 120.00556 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.05839 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.84315 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.78383 * 180.27398 * 12 11 10 33 33 H 0.97001 * 120.00000 * 145.52027 * 14 13 12 34 34 H 0.96993 * 120.00602 * 0.02562 * 17 15 14 35 35 H 1.08998 * 109.46835 * 59.99964 * 18 17 15 36 36 H 1.09003 * 109.47219 * 300.00552 * 18 17 15 37 37 H 1.08998 * 113.97871 * 0.07205 * 21 19 18 38 38 H 1.09003 * 113.27918 * 229.26253 * 21 19 18 39 39 H 1.07995 * 119.95403 * 0.02562 * 23 22 21 40 40 H 1.08001 * 120.00256 * 180.23626 * 24 23 22 41 41 H 1.07991 * 120.01081 * 180.02562 * 25 24 23 42 42 H 1.07996 * 119.94857 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.15478 * 180.30254 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3527 10 6 1.8186 -3.6477 0.1246 11 6 1.1696 -4.8104 -0.2239 12 6 0.0495 -4.7691 -1.0380 13 6 -0.4258 -3.5531 -1.5223 14 7 -1.5549 -3.5236 -2.3488 15 6 -1.7791 -4.5276 -3.2196 16 8 -0.9544 -5.4109 -3.3544 17 7 -2.9173 -4.5524 -3.9409 18 6 -3.1607 -5.6435 -4.8879 19 6 -4.5140 -5.4341 -5.5702 20 1 -4.6571 -4.4129 -5.9235 21 6 -4.8322 -6.4991 -6.6109 22 6 -5.9685 -6.9260 -5.7200 23 6 -7.0377 -7.7889 -5.5231 24 6 -7.8031 -7.6927 -4.3780 25 6 -7.5079 -6.7325 -3.4285 26 6 -6.4475 -5.8704 -3.6255 27 6 -5.6777 -5.9658 -4.7765 28 6 0.2125 -2.3743 -1.1833 29 1 -0.4851 0.8400 -0.0004 30 1 2.6889 -3.6845 0.7631 31 1 1.5329 -5.7592 0.1423 32 1 -0.4557 -5.6863 -1.3024 33 1 -2.1761 -2.7806 -2.2949 34 1 -3.5750 -3.8476 -3.8337 35 1 -3.1666 -6.5936 -4.3537 36 1 -2.3718 -5.6545 -5.6401 37 1 -4.0562 -7.2564 -6.7213 38 1 -5.1579 -6.0851 -7.5652 39 1 -7.2685 -8.5395 -6.2645 40 1 -8.6324 -8.3674 -4.2244 41 1 -8.1060 -6.6571 -2.5325 42 1 -6.2176 -5.1201 -2.8836 43 1 -0.1584 -1.4303 -1.5545 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661888407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:12 Heat of formation + Delta-G solvation = 36.486633 kcal Electronic energy + Delta-G solvation = -25158.634275 eV Core-core repulsion = 21554.723691 eV Total energy + Delta-G solvation = -3603.910584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84700 -41.20895 -39.15915 -37.19154 -35.96659 -35.29448 -34.90748 -31.68817 -31.43448 -30.47922 -28.96857 -27.18894 -27.01201 -24.38631 -23.19450 -22.90016 -22.28802 -21.61267 -20.82350 -19.44083 -19.14158 -17.87787 -17.66224 -17.12253 -16.60002 -16.41179 -16.28251 -16.02421 -15.80602 -15.46011 -15.00737 -14.84436 -14.58902 -14.34963 -14.14723 -13.89693 -13.54153 -13.38348 -13.09347 -13.04724 -12.84383 -12.81180 -12.58573 -12.46675 -12.33048 -11.86075 -11.75731 -11.55983 -11.35815 -11.22929 -11.04451 -10.76396 -10.14308 -9.74059 -9.54456 -9.30788 -8.80611 -8.50827 -6.33130 0.39363 0.44651 0.91376 1.07851 1.41421 1.51357 1.56141 1.69305 2.16821 2.24162 2.79283 2.81776 3.15510 3.27115 3.50266 3.69877 3.75351 3.83827 4.19576 4.21898 4.26631 4.46054 4.58962 4.67283 4.71460 4.75240 4.77131 4.86491 4.88134 4.99941 5.12814 5.15875 5.17660 5.19793 5.23248 5.36243 5.42904 5.48019 5.59098 5.76977 5.81268 5.83586 6.01795 6.09042 6.11142 6.18905 6.40424 6.69858 6.95919 6.99182 7.09538 7.57344 8.36491 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002343 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.966627 B =11948.989315 C =12328.432631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.093 3.907 10 C -0.250 4.250 11 C -0.084 4.084 12 C -0.241 4.241 13 C 0.171 3.829 14 N -0.674 5.674 15 C 0.698 3.302 16 O -0.617 6.617 17 N -0.726 5.726 18 C 0.158 3.842 19 C -0.046 4.046 20 H 0.123 0.877 21 C -0.056 4.056 22 C -0.144 4.144 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.109 4.109 27 C -0.147 4.147 28 C -0.204 4.204 29 H 0.289 0.711 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.413 0.587 34 H 0.411 0.589 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.119 0.881 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.098 -7.246 -12.260 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.270 4.270 11 C -0.103 4.103 12 C -0.262 4.262 13 C 0.077 3.923 14 N -0.321 5.321 15 C 0.399 3.601 16 O -0.496 6.496 17 N -0.383 5.383 18 C 0.034 3.966 19 C -0.064 4.064 20 H 0.141 0.859 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.127 4.127 27 C -0.147 4.147 28 C -0.226 4.226 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.249 0.751 34 H 0.247 0.753 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.137 0.863 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.649 -7.933 -12.399 22.223 hybrid contribution -0.247 1.222 0.569 1.370 sum -16.896 -6.712 -11.831 21.691 Atomic orbital electron populations 1.69841 1.08746 1.30527 1.35620 1.26694 0.95598 1.04218 0.91197 0.85271 0.78832 0.75802 0.79896 1.18786 1.19000 1.18554 1.19753 0.98017 0.92143 1.42856 0.90579 1.17760 0.91401 0.93109 0.88770 1.21199 1.04735 0.93012 1.08005 1.20719 0.95102 0.97419 0.97077 1.20469 1.02680 0.95819 1.07230 1.17423 0.88205 0.94224 0.92402 1.42459 1.26088 1.24688 1.38897 1.16102 0.82776 0.82095 0.79132 1.90899 1.47424 1.40310 1.71014 1.44896 1.19485 1.29812 1.44113 1.21082 0.96021 0.88671 0.90795 1.21298 0.89248 1.01985 0.93917 0.85933 1.21498 0.93980 0.96446 0.97393 1.22187 0.97036 0.96494 0.98649 1.20742 0.94393 0.99116 0.98352 1.21337 1.00214 0.98806 0.93684 1.21297 0.97499 0.95781 1.00285 1.20712 0.95339 1.00027 0.96601 1.22018 0.97893 0.99264 0.95543 1.20984 1.00651 0.95599 1.05399 0.90081 0.88040 0.86387 0.88242 0.75102 0.75320 0.93201 0.90720 0.87961 0.86507 0.84622 0.83535 0.84208 0.86278 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.51 10.94 21.82 0.24 -41.27 16 2 C 0.04 1.89 5.16 85.25 0.44 2.33 16 3 Si 0.98 37.70 29.59 68.60 2.03 39.73 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.50 -27.00 9.06 23.46 0.21 -26.78 16 8 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 9 C 0.09 5.12 5.57 -21.31 -0.12 5.00 16 10 C -0.25 -12.89 9.79 22.75 0.22 -12.67 16 11 C -0.08 -4.09 10.02 22.20 0.22 -3.87 16 12 C -0.24 -11.97 8.66 22.58 0.20 -11.77 16 13 C 0.17 8.34 6.25 38.09 0.24 8.58 16 14 N -0.67 -26.13 5.34 -317.32 -1.69 -27.82 16 15 C 0.70 25.92 8.29 179.05 1.48 27.41 16 16 O -0.62 -28.31 14.09 -4.01 -0.06 -28.37 16 17 N -0.73 -18.49 5.56 -478.52 -2.66 -21.15 16 18 C 0.16 3.50 5.37 86.38 0.46 3.97 16 19 C -0.05 -0.72 3.91 -12.02 -0.05 -0.76 16 20 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 21 C -0.06 -0.72 7.76 29.37 0.23 -0.49 16 22 C -0.14 -2.50 7.42 -20.08 -0.15 -2.65 16 23 C -0.11 -1.74 10.06 22.37 0.22 -1.51 16 24 C -0.12 -1.89 10.04 22.23 0.22 -1.67 16 25 C -0.13 -2.25 10.04 22.23 0.22 -2.03 16 26 C -0.11 -2.14 10.06 22.37 0.22 -1.91 16 27 C -0.15 -2.81 6.86 -20.09 -0.14 -2.94 16 28 C -0.20 -10.80 8.60 22.85 0.20 -10.60 16 29 H 0.29 13.08 8.30 -92.71 -0.77 12.32 16 30 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 31 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 32 H 0.10 4.95 6.48 -2.91 -0.02 4.93 16 33 H 0.41 13.25 8.83 -92.71 -0.82 12.43 16 34 H 0.41 7.86 8.49 -92.71 -0.79 7.07 16 35 H 0.05 1.32 8.04 -2.39 -0.02 1.30 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 1.21 7.98 -2.39 -0.02 1.19 16 38 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.14 1.84 8.06 -2.92 -0.02 1.82 16 42 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.11 6.09 6.17 -2.91 -0.02 6.08 16 Total: -1.00 -69.98 364.69 1.65 -68.33 By element: Atomic # 1 Polarization: 43.47 SS G_CDS: -0.55 Total: 42.92 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 4.35 Total: -32.37 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -4.12 Total: -90.24 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.06 Total: -28.37 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -69.98 1.65 -68.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661888407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.816 kcal (2) G-P(sol) polarization free energy of solvation -69.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds