Wall clock time and date at job start Tue Mar 31 2020 13:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47114 * 299.99399 * 3 2 1 6 6 H 1.48498 * 109.47596 * 59.99768 * 3 2 1 7 7 C 1.37875 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47234 * 175.00640 * 9 7 2 11 11 H 1.09003 * 109.47261 * 54.91817 * 10 9 7 12 12 N 1.46899 * 109.47157 * 294.91752 * 10 9 7 13 13 C 1.46905 * 111.00191 * 157.47946 * 12 10 9 14 14 C 1.50693 * 109.47272 * 185.15485 * 13 12 10 15 15 C 1.34042 * 124.91579 * 89.99156 * 14 13 12 16 16 C 1.46629 * 106.17670 * 179.97438 * 15 14 13 17 17 C 1.39144 * 135.25467 * 180.02562 * 16 15 14 18 18 N 1.31767 * 120.09238 * 179.97438 * 17 16 15 19 19 C 1.32255 * 122.11455 * 0.03407 * 18 17 16 20 20 C 1.37804 * 121.51680 * 359.97438 * 19 18 17 21 21 C 1.39162 * 118.91917 * 359.97438 * 20 19 18 22 22 O 1.34367 * 134.63617 * 180.34847 * 21 20 19 23 23 C 1.50705 * 109.47361 * 174.91859 * 10 9 7 24 24 C 1.38233 * 119.99605 * 260.00309 * 23 10 9 25 25 C 1.38243 * 119.99620 * 179.97438 * 24 23 10 26 26 C 1.38229 * 120.00194 * 359.95735 * 25 24 23 27 27 C 1.38238 * 119.99693 * 359.97438 * 26 25 24 28 28 C 1.38228 * 120.00237 * 0.07185 * 27 26 25 29 29 H 0.96997 * 120.00035 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46835 * 55.00750 * 9 7 2 31 31 H 1.09000 * 109.47094 * 295.00648 * 9 7 2 32 32 H 1.00897 * 111.00277 * 281.42922 * 12 10 9 33 33 H 1.09000 * 109.46376 * 305.14978 * 13 12 10 34 34 H 1.08995 * 109.47489 * 65.14971 * 13 12 10 35 35 H 1.07999 * 126.90751 * 0.02562 * 15 14 13 36 36 H 1.08004 * 119.95424 * 359.97438 * 17 16 15 37 37 H 1.08000 * 119.23844 * 179.97438 * 19 18 17 38 38 H 1.07991 * 120.53804 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00668 * 359.97153 * 24 23 10 40 40 H 1.08001 * 119.99911 * 179.97438 * 25 24 23 41 41 H 1.07995 * 120.00385 * 179.72263 * 26 25 24 42 42 H 1.08010 * 119.99759 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00038 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2406 -3.6593 -0.1244 11 1 2.9870 -3.5871 0.6667 12 7 2.9060 -3.5967 -1.4325 13 6 4.1889 -4.3120 -1.4055 14 6 4.8989 -4.1200 -2.7207 15 6 5.7530 -3.1235 -2.9933 16 6 6.1966 -3.3322 -4.3752 17 6 7.0598 -2.6744 -5.2460 18 7 7.2464 -3.1365 -6.4658 19 6 6.6343 -4.2225 -6.9075 20 6 5.7635 -4.9332 -6.1102 21 6 5.5281 -4.4926 -4.8114 22 8 4.7719 -4.9276 -3.7894 23 6 1.5009 -4.9663 0.0008 24 6 1.5076 -5.6520 1.2011 25 6 0.8286 -6.8506 1.3161 26 6 0.1421 -7.3630 0.2312 27 6 0.1343 -6.6765 -0.9686 28 6 0.8141 -5.4785 -1.0840 29 1 -0.4850 0.8400 -0.0004 30 1 0.5594 -2.5193 -0.8417 31 1 0.6929 -2.5964 0.9317 32 1 2.3070 -3.9561 -2.1605 33 1 4.8069 -3.9190 -0.5982 34 1 4.0091 -5.3744 -1.2413 35 1 6.0544 -2.3276 -2.3284 36 1 7.5776 -1.7838 -4.9217 37 1 6.8212 -4.5600 -7.9162 38 1 5.2725 -5.8182 -6.4870 39 1 2.0433 -5.2514 2.0490 40 1 0.8341 -7.3866 2.2537 41 1 -0.3846 -8.3016 0.3197 42 1 -0.4017 -7.0771 -1.8165 43 1 0.8083 -4.9424 -2.0215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661985829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:57 Heat of formation + Delta-G solvation = 66.517341 kcal Electronic energy + Delta-G solvation = -25756.323332 eV Core-core repulsion = 22153.714977 eV Total energy + Delta-G solvation = -3602.608355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.66864 -39.35506 -39.01036 -36.31416 -33.43830 -32.69211 -31.86600 -31.43437 -30.68339 -29.50983 -28.61056 -25.78303 -24.25595 -23.65234 -22.53059 -22.12664 -21.94032 -21.19305 -19.79131 -17.94302 -17.21940 -16.73760 -16.40213 -16.11240 -15.94231 -15.13553 -14.97566 -14.73215 -14.60248 -14.32326 -14.18765 -13.76783 -13.41797 -13.28927 -13.12509 -12.91870 -12.76830 -12.36226 -12.22004 -12.09258 -11.54796 -11.24173 -11.09232 -10.91883 -10.73757 -10.53438 -10.31530 -10.24451 -9.81874 -9.70237 -9.43549 -9.08589 -8.69273 -8.38932 -8.30594 -8.25356 -7.93111 -5.93402 -3.92280 0.64096 1.19005 1.61971 1.63283 2.27099 2.51767 3.35433 3.43352 3.46732 3.67470 4.03615 4.19896 4.32968 4.50395 4.52184 4.74078 4.87227 4.98552 5.06115 5.12192 5.12691 5.20935 5.33999 5.40098 5.41184 5.44608 5.60143 5.63554 5.74783 5.78219 5.79236 5.93412 5.98945 6.22734 6.27738 6.32102 6.36828 6.65840 6.69285 6.70765 6.87530 7.02490 7.24779 7.30655 7.53835 7.81340 7.81614 7.85041 8.05420 8.47326 9.11898 9.69443 11.18378 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007809 B = 0.004403 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.556463 B = 6358.114624 C = 9317.936060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.131 3.869 11 H 0.079 0.921 12 N -0.653 5.653 13 C 0.132 3.868 14 C 0.048 3.952 15 C -0.172 4.172 16 C -0.181 4.181 17 C 0.159 3.841 18 N -0.496 5.496 19 C 0.102 3.898 20 C -0.159 4.159 21 C 0.086 3.914 22 O -0.189 6.189 23 C -0.096 4.096 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.135 4.135 27 C -0.118 4.118 28 C -0.118 4.118 29 H 0.258 0.742 30 H 0.023 0.977 31 H 0.019 0.981 32 H 0.339 0.661 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.006 -14.019 -5.885 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.004 3.996 10 C 0.022 3.978 11 H 0.098 0.902 12 N -0.284 5.284 13 C 0.003 3.997 14 C 0.001 3.999 15 C -0.193 4.193 16 C -0.184 4.184 17 C -0.004 4.004 18 N -0.206 5.206 19 C -0.049 4.049 20 C -0.179 4.179 21 C 0.031 3.969 22 O -0.089 6.089 23 C -0.097 4.097 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.153 4.153 27 C -0.136 4.136 28 C -0.137 4.137 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.159 0.841 33 H 0.125 0.875 34 H 0.062 0.938 35 H 0.184 0.816 36 H 0.180 0.820 37 H 0.182 0.818 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.521 -13.127 -6.367 17.421 hybrid contribution -0.656 -0.328 0.518 0.898 sum 8.865 -13.455 -5.849 17.142 Atomic orbital electron populations 1.69973 1.06001 1.26257 1.51899 1.24981 0.94758 0.99079 0.95885 0.86571 0.80146 0.84126 0.77312 1.19782 1.21277 1.21378 1.21097 0.93111 0.90047 1.48719 0.92219 1.19109 0.92892 0.90304 0.97304 1.21012 0.96068 0.91128 0.89597 0.90249 1.60720 1.03797 1.57251 1.06648 1.20573 0.92929 0.97792 0.88440 1.22551 0.98278 0.90600 0.88458 1.22227 1.01622 1.01200 0.94249 1.21034 1.02353 0.98357 0.96630 1.22327 0.92856 0.97660 0.87521 1.67763 1.24199 1.13421 1.15225 1.22476 0.92209 0.90676 0.99510 1.20965 1.03249 1.03748 0.89948 1.19746 0.92793 0.94350 0.90019 1.83910 1.57024 1.48413 1.19559 1.21148 0.97819 0.97193 0.93590 1.21079 1.00075 0.94917 0.97374 1.21094 0.98022 0.96428 0.98372 1.21029 1.00629 1.00080 0.93587 1.21065 0.99480 0.95503 0.97592 1.20967 0.97833 0.95963 0.98926 0.93280 0.95827 0.96290 0.84112 0.87525 0.93768 0.81601 0.82032 0.81831 0.84153 0.86125 0.86564 0.86722 0.86564 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.49 -13.16 8.84 -34.44 -0.30 -13.46 16 8 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 9 C 0.04 1.00 4.63 -27.89 -0.13 0.87 16 10 C 0.13 2.43 2.16 -68.87 -0.15 2.28 16 11 H 0.08 1.43 7.62 -51.93 -0.40 1.04 16 12 N -0.65 -11.31 5.89 -109.22 -0.64 -11.95 16 13 C 0.13 1.87 5.99 -4.98 -0.03 1.84 16 14 C 0.05 0.71 6.79 -35.79 -0.24 0.46 16 15 C -0.17 -2.43 11.00 -37.67 -0.41 -2.85 16 16 C -0.18 -2.52 6.44 -105.19 -0.68 -3.20 16 17 C 0.16 2.00 11.26 -17.24 -0.19 1.81 16 18 N -0.50 -6.29 10.35 -13.05 -0.14 -6.42 16 19 C 0.10 1.09 11.14 -17.53 -0.20 0.90 16 20 C -0.16 -1.79 10.13 -39.40 -0.40 -2.19 16 21 C 0.09 1.21 7.49 -38.25 -0.29 0.92 16 22 O -0.19 -2.83 10.57 4.86 0.05 -2.78 16 23 C -0.10 -1.58 4.66 -104.62 -0.49 -2.07 16 24 C -0.12 -1.74 9.67 -39.58 -0.38 -2.12 16 25 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 26 C -0.14 -1.74 10.05 -39.58 -0.40 -2.14 16 27 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 28 C -0.12 -1.86 9.15 -39.59 -0.36 -2.22 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.34 5.78 6.47 -39.29 -0.25 5.53 16 33 H 0.11 1.40 7.94 -51.93 -0.41 0.98 16 34 H 0.04 0.60 8.01 -51.93 -0.42 0.18 16 35 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.16 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.12 1.84 6.51 -52.49 -0.34 1.50 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -31.66 369.23 -10.58 -42.24 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.59 Total: 6.60 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -5.55 Total: -23.82 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.04 Total: -44.36 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: 0.05 Total: -2.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.66 -10.58 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661985829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.758 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds