Wall clock time and date at job start Tue Mar 31 2020 13:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47114 * 299.99399 * 3 2 1 6 6 H 1.48498 * 109.47596 * 59.99768 * 3 2 1 7 7 C 1.37875 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47234 * 175.00640 * 9 7 2 11 11 H 1.09003 * 109.47261 * 54.91817 * 10 9 7 12 12 N 1.46899 * 109.47157 * 294.91752 * 10 9 7 13 13 C 1.46905 * 111.00191 * 157.47946 * 12 10 9 14 14 C 1.50693 * 109.47272 * 185.15485 * 13 12 10 15 15 C 1.34042 * 124.91579 * 89.99156 * 14 13 12 16 16 C 1.46629 * 106.17670 * 179.97438 * 15 14 13 17 17 C 1.39144 * 135.25467 * 180.02562 * 16 15 14 18 18 N 1.31767 * 120.09238 * 179.97438 * 17 16 15 19 19 C 1.32255 * 122.11455 * 0.03407 * 18 17 16 20 20 C 1.37804 * 121.51680 * 359.97438 * 19 18 17 21 21 C 1.39162 * 118.91917 * 359.97438 * 20 19 18 22 22 O 1.34367 * 134.63617 * 180.34847 * 21 20 19 23 23 C 1.50705 * 109.47361 * 174.91859 * 10 9 7 24 24 C 1.38233 * 119.99605 * 260.00309 * 23 10 9 25 25 C 1.38243 * 119.99620 * 179.97438 * 24 23 10 26 26 C 1.38229 * 120.00194 * 359.95735 * 25 24 23 27 27 C 1.38238 * 119.99693 * 359.97438 * 26 25 24 28 28 C 1.38228 * 120.00237 * 0.07185 * 27 26 25 29 29 H 0.96997 * 120.00035 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46835 * 55.00750 * 9 7 2 31 31 H 1.09000 * 109.47094 * 295.00648 * 9 7 2 32 32 H 1.00897 * 111.00277 * 281.42922 * 12 10 9 33 33 H 1.09000 * 109.46376 * 305.14978 * 13 12 10 34 34 H 1.08995 * 109.47489 * 65.14971 * 13 12 10 35 35 H 1.07999 * 126.90751 * 0.02562 * 15 14 13 36 36 H 1.08004 * 119.95424 * 359.97438 * 17 16 15 37 37 H 1.08000 * 119.23844 * 179.97438 * 19 18 17 38 38 H 1.07991 * 120.53804 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00668 * 359.97153 * 24 23 10 40 40 H 1.08001 * 119.99911 * 179.97438 * 25 24 23 41 41 H 1.07995 * 120.00385 * 179.72263 * 26 25 24 42 42 H 1.08010 * 119.99759 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00038 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2406 -3.6593 -0.1244 11 1 2.9870 -3.5871 0.6667 12 7 2.9060 -3.5967 -1.4325 13 6 4.1889 -4.3120 -1.4055 14 6 4.8989 -4.1200 -2.7207 15 6 5.7530 -3.1235 -2.9933 16 6 6.1966 -3.3322 -4.3752 17 6 7.0598 -2.6744 -5.2460 18 7 7.2464 -3.1365 -6.4658 19 6 6.6343 -4.2225 -6.9075 20 6 5.7635 -4.9332 -6.1102 21 6 5.5281 -4.4926 -4.8114 22 8 4.7719 -4.9276 -3.7894 23 6 1.5009 -4.9663 0.0008 24 6 1.5076 -5.6520 1.2011 25 6 0.8286 -6.8506 1.3161 26 6 0.1421 -7.3630 0.2312 27 6 0.1343 -6.6765 -0.9686 28 6 0.8141 -5.4785 -1.0840 29 1 -0.4850 0.8400 -0.0004 30 1 0.5594 -2.5193 -0.8417 31 1 0.6929 -2.5964 0.9317 32 1 2.3070 -3.9561 -2.1605 33 1 4.8069 -3.9190 -0.5982 34 1 4.0091 -5.3744 -1.2413 35 1 6.0544 -2.3276 -2.3284 36 1 7.5776 -1.7838 -4.9217 37 1 6.8212 -4.5600 -7.9162 38 1 5.2725 -5.8182 -6.4870 39 1 2.0433 -5.2514 2.0490 40 1 0.8341 -7.3866 2.2537 41 1 -0.3846 -8.3016 0.3197 42 1 -0.4017 -7.0771 -1.8165 43 1 0.8083 -4.9424 -2.0215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661985829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:57 Heat of formation + Delta-G solvation = 48.783094 kcal Electronic energy + Delta-G solvation = -25757.092346 eV Core-core repulsion = 22153.714977 eV Total energy + Delta-G solvation = -3603.377369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.69744 -40.54010 -39.96835 -37.61822 -35.06635 -34.12111 -33.05459 -32.48231 -31.78020 -30.69758 -30.19046 -27.16976 -25.75540 -24.67638 -23.78933 -23.35823 -23.13775 -22.25560 -21.18920 -18.92849 -18.68549 -17.92234 -17.71480 -17.49917 -16.87248 -16.54531 -16.34727 -16.17676 -15.68180 -15.53144 -15.19187 -14.97774 -14.45899 -14.41776 -14.32503 -14.20801 -14.13844 -13.69589 -13.59666 -13.42149 -13.04788 -12.79482 -12.53051 -12.42630 -12.31981 -12.06829 -11.77455 -11.49795 -11.30644 -11.11166 -10.74924 -10.49722 -10.43022 -9.80068 -9.56491 -9.36718 -9.21742 -8.08851 -6.14000 -0.30646 0.19970 0.48541 0.52267 1.20542 1.42420 1.44261 1.50140 1.55921 2.48071 2.73993 2.91267 3.17100 3.25687 3.43213 3.44954 3.59783 3.88849 3.94774 3.97806 4.05815 4.13674 4.17950 4.30365 4.33270 4.41051 4.51057 4.57997 4.67598 4.72169 4.74222 4.82576 4.96208 4.99351 5.14544 5.17512 5.27110 5.46339 5.48033 5.56785 5.60828 5.62492 5.66658 5.89092 5.97782 6.15110 6.20186 6.34323 6.46722 6.89880 6.99638 7.51865 9.03420 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007809 B = 0.004403 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.556463 B = 6358.114624 C = 9317.936060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.005 4.005 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.495 4.495 8 H 0.064 0.936 9 C 0.051 3.949 10 C 0.148 3.852 11 H 0.082 0.918 12 N -0.669 5.669 13 C 0.141 3.859 14 C 0.033 3.967 15 C -0.175 4.175 16 C -0.201 4.201 17 C 0.154 3.846 18 N -0.511 5.511 19 C 0.107 3.893 20 C -0.159 4.159 21 C 0.064 3.936 22 O -0.201 6.201 23 C -0.116 4.116 24 C -0.129 4.129 25 C -0.120 4.120 26 C -0.131 4.131 27 C -0.123 4.123 28 C -0.135 4.135 29 H 0.257 0.743 30 H -0.010 1.010 31 H -0.009 1.009 32 H 0.337 0.663 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.203 0.797 38 H 0.168 0.832 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.254 -15.481 -6.456 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.201 4.201 3 Si 0.781 3.219 4 H -0.183 1.183 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.533 4.533 8 H 0.082 0.918 9 C 0.013 3.987 10 C 0.038 3.962 11 H 0.101 0.899 12 N -0.300 5.300 13 C 0.013 3.987 14 C -0.014 4.014 15 C -0.196 4.196 16 C -0.204 4.204 17 C -0.008 4.008 18 N -0.221 5.221 19 C -0.043 4.043 20 C -0.179 4.179 21 C 0.009 3.991 22 O -0.101 6.101 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.141 4.141 28 C -0.154 4.154 29 H 0.066 0.934 30 H 0.008 0.992 31 H 0.009 0.991 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.071 0.929 35 H 0.193 0.807 36 H 0.199 0.801 37 H 0.219 0.781 38 H 0.185 0.815 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.795 -14.599 -6.936 19.436 hybrid contribution -1.046 0.039 0.613 1.213 sum 9.749 -14.559 -6.323 18.628 Atomic orbital electron populations 1.70114 1.07681 1.27016 1.53544 1.25836 0.95527 1.02815 0.95878 0.85542 0.79484 0.79762 0.77092 1.18331 1.21464 1.20945 1.21488 0.93453 0.91159 1.47241 0.91780 1.18883 0.93224 0.92249 0.94327 1.20516 0.94946 0.90289 0.90416 0.89942 1.60580 1.04884 1.58565 1.05936 1.20507 0.91359 0.97963 0.88906 1.22547 0.98987 0.91195 0.88676 1.22450 1.01330 1.01091 0.94734 1.21209 1.03364 0.99051 0.96792 1.22673 0.92558 0.98165 0.87421 1.67845 1.24774 1.14332 1.15170 1.23149 0.90816 0.89571 1.00813 1.21374 1.03156 1.04599 0.88806 1.20276 0.93085 0.94909 0.90844 1.83873 1.57584 1.48768 1.19922 1.20945 0.99115 0.96816 0.94877 1.21282 1.00705 0.95822 0.96903 1.21462 0.96886 0.95648 0.99829 1.21462 0.99714 1.00898 0.92761 1.21374 0.98989 0.94713 0.99035 1.21041 0.98743 0.97093 0.98512 0.93391 0.99178 0.99113 0.84367 0.86481 0.92916 0.80736 0.80118 0.78073 0.81480 0.85423 0.83584 0.83419 0.84351 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 3 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.50 -27.20 8.84 25.60 0.23 -26.98 16 8 H 0.06 3.39 7.75 -2.91 -0.02 3.37 16 9 C 0.05 2.57 4.63 29.85 0.14 2.71 16 10 C 0.15 5.66 2.16 44.17 0.10 5.75 16 11 H 0.08 3.04 7.62 -2.39 -0.02 3.02 16 12 N -0.67 -23.87 5.89 -499.47 -2.94 -26.81 16 13 C 0.14 4.04 5.99 85.55 0.51 4.55 16 14 C 0.03 0.97 6.79 24.73 0.17 1.14 16 15 C -0.17 -4.95 11.00 23.51 0.26 -4.70 16 16 C -0.20 -5.54 6.44 -20.23 -0.13 -5.67 16 17 C 0.15 3.73 11.26 84.92 0.96 4.68 16 18 N -0.51 -12.06 10.35 -195.21 -2.02 -14.08 16 19 C 0.11 2.02 11.14 84.53 0.94 2.97 16 20 C -0.16 -3.30 10.13 22.39 0.23 -3.07 16 21 C 0.06 1.75 7.49 23.13 0.17 1.93 16 22 O -0.20 -6.03 10.57 -5.54 -0.06 -6.09 16 23 C -0.12 -3.89 4.66 -19.87 -0.09 -3.98 16 24 C -0.13 -3.78 9.67 22.27 0.22 -3.56 16 25 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 26 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 27 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 28 C -0.14 -4.31 9.15 22.27 0.20 -4.10 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 30 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 31 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.34 12.07 6.47 -89.70 -0.58 11.49 16 33 H 0.12 3.04 7.94 -2.39 -0.02 3.02 16 34 H 0.05 1.42 8.01 -2.39 -0.02 1.40 16 35 H 0.18 4.43 8.06 -2.91 -0.02 4.40 16 36 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.20 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.17 2.44 8.06 -2.92 -0.02 2.42 16 39 H 0.13 3.45 8.04 -2.91 -0.02 3.43 16 40 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.11 3.58 6.51 -2.91 -0.02 3.57 16 Total: -1.00 -70.25 369.23 2.76 -67.49 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.45 Total: 26.65 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 5.03 Total: -36.63 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -4.68 Total: -98.27 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.06 Total: -6.09 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -70.25 2.76 -67.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661985829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.273 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds