Wall clock time and date at job start Tue Mar 31 2020 13:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47217 * 239.99807 * 3 2 1 5 5 H 1.48493 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47130 * 120.00201 * 3 2 1 7 7 C 1.37881 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46668 * 175.19853 * 9 7 2 11 11 H 1.08993 * 109.47281 * 305.32756 * 10 9 7 12 12 N 1.46899 * 109.46833 * 65.32993 * 10 9 7 13 13 C 1.46901 * 110.99535 * 202.89006 * 12 10 9 14 14 C 1.50705 * 109.46886 * 184.06521 * 13 12 10 15 15 C 1.34037 * 124.91143 * 90.00152 * 14 13 12 16 16 C 1.46631 * 106.17498 * 179.97438 * 15 14 13 17 17 C 1.39139 * 135.25429 * 179.97438 * 16 15 14 18 18 N 1.31766 * 120.09544 * 179.97438 * 17 16 15 19 19 C 1.32253 * 122.10770 * 0.04280 * 18 17 16 20 20 C 1.37801 * 121.52087 * 359.97438 * 19 18 17 21 21 C 1.39160 * 118.91742 * 0.02562 * 20 19 18 22 22 O 1.34366 * 134.63147 * 180.34792 * 21 20 19 23 23 C 1.50703 * 109.46599 * 185.32759 * 10 9 7 24 24 C 1.38233 * 119.99893 * 279.72710 * 23 10 9 25 25 C 1.38237 * 119.99777 * 179.81604 * 24 23 10 26 26 C 1.38239 * 120.00126 * 0.39535 * 25 24 23 27 27 C 1.38229 * 119.99689 * 359.85586 * 26 25 24 28 28 C 1.38233 * 120.00215 * 359.96070 * 27 26 25 29 29 H 0.97001 * 119.99554 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46654 * 55.20433 * 9 7 2 31 31 H 1.08991 * 109.47282 * 295.20246 * 9 7 2 32 32 H 1.00893 * 110.99948 * 78.93754 * 12 10 9 33 33 H 1.08998 * 109.47334 * 304.06385 * 13 12 10 34 34 H 1.08993 * 109.47407 * 64.06371 * 13 12 10 35 35 H 1.07997 * 126.91190 * 0.02562 * 15 14 13 36 36 H 1.07996 * 119.95937 * 359.97438 * 17 16 15 37 37 H 1.08004 * 119.23565 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.54159 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00390 * 359.97438 * 24 23 10 40 40 H 1.07997 * 119.99953 * 180.23003 * 25 24 23 41 41 H 1.07996 * 119.99884 * 179.83832 * 26 25 24 42 42 H 1.08001 * 119.99842 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.00109 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2407 -3.6596 -0.1219 11 1 2.8657 -3.5134 -1.0028 12 7 3.0880 -3.7078 1.0771 13 6 4.3527 -4.4021 0.8004 14 6 5.1501 -4.5199 2.0738 15 6 5.0733 -5.5440 2.9350 16 6 6.0154 -5.2397 4.0167 17 6 6.4090 -5.8725 5.1916 18 7 7.3114 -5.3140 5.9726 19 6 7.8704 -4.1514 5.6812 20 6 7.5373 -3.4583 4.5377 21 6 6.5895 -3.9999 3.6746 22 8 6.0465 -3.6150 2.5074 23 6 1.4821 -4.9551 -0.2536 24 6 0.9619 -5.5687 0.8706 25 6 0.2628 -6.7550 0.7494 26 6 0.0910 -7.3320 -0.4950 27 6 0.6157 -6.7211 -1.6185 28 6 1.3115 -5.5328 -1.4977 29 1 -0.4849 0.8401 -0.0004 30 1 0.5611 -2.5203 -0.8442 31 1 0.6906 -2.5952 0.9294 32 1 2.5998 -4.1390 1.8477 33 1 4.1426 -5.3978 0.4099 34 1 4.9243 -3.8365 0.0647 35 1 4.4447 -6.4180 2.8491 36 1 5.9744 -6.8230 5.4639 37 1 8.6051 -3.7357 6.3549 38 1 8.0041 -2.5102 4.3150 39 1 1.0994 -5.1199 1.8433 40 1 -0.1468 -7.2325 1.6272 41 1 -0.4530 -8.2602 -0.5894 42 1 0.4818 -7.1721 -2.5906 43 1 1.7218 -5.0556 -2.3755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661985830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:00 Heat of formation + Delta-G solvation = 66.926558 kcal Electronic energy + Delta-G solvation = -25750.358887 eV Core-core repulsion = 22147.768277 eV Total energy + Delta-G solvation = -3602.590610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.70384 -39.37795 -39.03588 -36.35471 -33.50341 -32.68145 -31.88095 -31.45494 -30.69934 -29.54596 -28.58792 -25.82953 -24.28744 -23.62192 -22.62031 -22.15908 -21.94752 -21.18401 -19.81432 -17.96606 -17.44217 -16.60989 -16.40147 -16.09891 -15.96701 -15.10089 -14.95450 -14.74542 -14.58456 -14.32638 -14.08113 -13.75037 -13.60184 -13.43090 -13.23391 -13.10580 -12.66473 -12.53925 -12.10135 -12.06687 -11.49122 -11.32352 -11.05367 -10.90257 -10.72498 -10.58297 -10.38581 -10.22009 -9.84897 -9.69325 -9.44649 -9.09716 -8.71246 -8.44938 -8.31017 -8.29088 -7.92946 -5.92761 -3.91710 0.60233 1.17051 1.60024 1.61472 2.16981 2.51742 3.38666 3.42763 3.46413 3.64054 4.01374 4.14486 4.27930 4.45848 4.53071 4.71802 4.81175 4.94514 5.04682 5.09460 5.12349 5.20445 5.25740 5.34003 5.41523 5.45070 5.53736 5.61566 5.68660 5.73825 5.77944 5.90810 5.97981 6.20168 6.21641 6.26923 6.33507 6.65034 6.67828 6.69197 6.86440 7.00218 7.23055 7.31020 7.54112 7.78070 7.80766 7.85516 8.06800 8.49485 9.13617 9.70339 11.18868 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.004307 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.154191 B = 6500.040804 C = 9442.970440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.495 4.495 8 H 0.061 0.939 9 C 0.043 3.957 10 C 0.130 3.870 11 H 0.080 0.920 12 N -0.654 5.654 13 C 0.125 3.875 14 C 0.065 3.935 15 C -0.201 4.201 16 C -0.181 4.181 17 C 0.156 3.844 18 N -0.495 5.495 19 C 0.102 3.898 20 C -0.155 4.155 21 C 0.088 3.912 22 O -0.175 6.175 23 C -0.095 4.095 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.135 4.135 27 C -0.120 4.120 28 C -0.115 4.115 29 H 0.259 0.741 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.338 0.662 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.409 -15.116 4.246 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.534 4.534 8 H 0.079 0.921 9 C 0.006 3.994 10 C 0.021 3.979 11 H 0.099 0.901 12 N -0.286 5.286 13 C -0.004 4.004 14 C 0.017 3.983 15 C -0.222 4.222 16 C -0.184 4.184 17 C -0.007 4.007 18 N -0.206 5.206 19 C -0.049 4.049 20 C -0.175 4.175 21 C 0.032 3.968 22 O -0.073 6.073 23 C -0.097 4.097 24 C -0.139 4.139 25 C -0.136 4.136 26 C -0.153 4.153 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.158 0.842 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.183 0.817 38 H 0.161 0.839 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.889 -14.449 4.762 18.145 hybrid contribution -0.337 0.439 -0.747 0.929 sum 9.552 -14.011 4.016 17.426 Atomic orbital electron populations 1.69954 1.05988 1.26490 1.51743 1.24991 0.94764 0.99081 0.95853 0.86683 0.79513 0.83381 0.78529 1.20443 1.21582 1.20356 1.21084 0.93246 0.90053 1.48992 0.92113 1.19091 0.92634 0.90244 0.97476 1.21034 0.93821 0.91345 0.91689 0.90138 1.60759 1.04054 1.55617 1.08169 1.20619 0.91048 0.98937 0.89766 1.22580 0.91074 0.87203 0.97467 1.22166 1.03671 1.01963 0.94410 1.20950 1.01328 0.97122 0.98978 1.22267 0.91898 0.98573 0.87971 1.67753 1.09591 1.11501 1.31709 1.22483 0.97849 0.90477 0.94046 1.21023 0.98908 1.02975 0.94637 1.19793 0.96257 0.94037 0.86679 1.84006 1.46801 1.44565 1.31951 1.21143 0.98203 0.97064 0.93260 1.20965 0.98688 0.95605 0.98606 1.21062 0.99156 0.96069 0.97338 1.21033 1.01139 1.00202 0.92953 1.21098 0.98432 0.96043 0.98267 1.21092 0.99596 0.95460 0.97248 0.93163 0.95601 0.96543 0.84170 0.91904 0.88795 0.82096 0.82212 0.81747 0.83910 0.86261 0.86543 0.86719 0.86562 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.50 -13.53 8.84 -34.44 -0.30 -13.83 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.04 1.05 4.63 -27.88 -0.13 0.92 16 10 C 0.13 2.42 2.16 -68.86 -0.15 2.27 16 11 H 0.08 1.49 7.74 -51.93 -0.40 1.09 16 12 N -0.65 -11.29 5.96 -109.22 -0.65 -11.94 16 13 C 0.13 1.77 5.99 -4.97 -0.03 1.74 16 14 C 0.06 0.93 6.70 -35.78 -0.24 0.69 16 15 C -0.20 -2.52 11.00 -37.68 -0.41 -2.93 16 16 C -0.18 -2.38 6.44 -105.19 -0.68 -3.06 16 17 C 0.16 1.82 11.26 -17.25 -0.19 1.63 16 18 N -0.50 -6.04 10.35 -13.06 -0.14 -6.18 16 19 C 0.10 1.09 11.14 -17.53 -0.20 0.89 16 20 C -0.15 -1.81 10.13 -39.40 -0.40 -2.21 16 21 C 0.09 1.25 7.49 -38.26 -0.29 0.97 16 22 O -0.17 -2.78 10.57 4.87 0.05 -2.73 16 23 C -0.09 -1.53 4.56 -104.62 -0.48 -2.01 16 24 C -0.12 -1.79 9.15 -39.58 -0.36 -2.15 16 25 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 26 C -0.14 -1.68 10.05 -39.58 -0.40 -2.07 16 27 C -0.12 -1.56 10.05 -39.59 -0.40 -1.95 16 28 C -0.12 -1.70 9.67 -39.58 -0.38 -2.09 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.34 5.51 6.33 -39.30 -0.25 5.26 16 33 H 0.06 0.77 7.85 -51.93 -0.41 0.37 16 34 H 0.09 1.35 8.13 -51.93 -0.42 0.92 16 35 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.17 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.12 1.72 6.49 -52.49 -0.34 1.38 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.12 1.66 8.04 -52.48 -0.42 1.24 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -32.14 369.11 -10.58 -42.72 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.59 Total: 5.55 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -5.53 Total: -23.73 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.05 Total: -44.27 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: 0.05 Total: -2.73 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.14 -10.58 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661985830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.649 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds