Wall clock time and date at job start Tue Mar 31 2020 13:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47217 * 239.99807 * 3 2 1 5 5 H 1.48493 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47130 * 120.00201 * 3 2 1 7 7 C 1.37881 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46668 * 175.19853 * 9 7 2 11 11 H 1.08993 * 109.47281 * 305.32756 * 10 9 7 12 12 N 1.46899 * 109.46833 * 65.32993 * 10 9 7 13 13 C 1.46901 * 110.99535 * 202.89006 * 12 10 9 14 14 C 1.50705 * 109.46886 * 184.06521 * 13 12 10 15 15 C 1.34037 * 124.91143 * 90.00152 * 14 13 12 16 16 C 1.46631 * 106.17498 * 179.97438 * 15 14 13 17 17 C 1.39139 * 135.25429 * 179.97438 * 16 15 14 18 18 N 1.31766 * 120.09544 * 179.97438 * 17 16 15 19 19 C 1.32253 * 122.10770 * 0.04280 * 18 17 16 20 20 C 1.37801 * 121.52087 * 359.97438 * 19 18 17 21 21 C 1.39160 * 118.91742 * 0.02562 * 20 19 18 22 22 O 1.34366 * 134.63147 * 180.34792 * 21 20 19 23 23 C 1.50703 * 109.46599 * 185.32759 * 10 9 7 24 24 C 1.38233 * 119.99893 * 279.72710 * 23 10 9 25 25 C 1.38237 * 119.99777 * 179.81604 * 24 23 10 26 26 C 1.38239 * 120.00126 * 0.39535 * 25 24 23 27 27 C 1.38229 * 119.99689 * 359.85586 * 26 25 24 28 28 C 1.38233 * 120.00215 * 359.96070 * 27 26 25 29 29 H 0.97001 * 119.99554 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46654 * 55.20433 * 9 7 2 31 31 H 1.08991 * 109.47282 * 295.20246 * 9 7 2 32 32 H 1.00893 * 110.99948 * 78.93754 * 12 10 9 33 33 H 1.08998 * 109.47334 * 304.06385 * 13 12 10 34 34 H 1.08993 * 109.47407 * 64.06371 * 13 12 10 35 35 H 1.07997 * 126.91190 * 0.02562 * 15 14 13 36 36 H 1.07996 * 119.95937 * 359.97438 * 17 16 15 37 37 H 1.08004 * 119.23565 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.54159 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00390 * 359.97438 * 24 23 10 40 40 H 1.07997 * 119.99953 * 180.23003 * 25 24 23 41 41 H 1.07996 * 119.99884 * 179.83832 * 26 25 24 42 42 H 1.08001 * 119.99842 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.00109 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2407 -3.6596 -0.1219 11 1 2.8657 -3.5134 -1.0028 12 7 3.0880 -3.7078 1.0771 13 6 4.3527 -4.4021 0.8004 14 6 5.1501 -4.5199 2.0738 15 6 5.0733 -5.5440 2.9350 16 6 6.0154 -5.2397 4.0167 17 6 6.4090 -5.8725 5.1916 18 7 7.3114 -5.3140 5.9726 19 6 7.8704 -4.1514 5.6812 20 6 7.5373 -3.4583 4.5377 21 6 6.5895 -3.9999 3.6746 22 8 6.0465 -3.6150 2.5074 23 6 1.4821 -4.9551 -0.2536 24 6 0.9619 -5.5687 0.8706 25 6 0.2628 -6.7550 0.7494 26 6 0.0910 -7.3320 -0.4950 27 6 0.6157 -6.7211 -1.6185 28 6 1.3115 -5.5328 -1.4977 29 1 -0.4849 0.8401 -0.0004 30 1 0.5611 -2.5203 -0.8442 31 1 0.6906 -2.5952 0.9294 32 1 2.5998 -4.1390 1.8477 33 1 4.1426 -5.3978 0.4099 34 1 4.9243 -3.8365 0.0647 35 1 4.4447 -6.4180 2.8491 36 1 5.9744 -6.8230 5.4639 37 1 8.6051 -3.7357 6.3549 38 1 8.0041 -2.5102 4.3150 39 1 1.0994 -5.1199 1.8433 40 1 -0.1468 -7.2325 1.6272 41 1 -0.4530 -8.2602 -0.5894 42 1 0.4818 -7.1721 -2.5906 43 1 1.7218 -5.0556 -2.3755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661985830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:59 Heat of formation + Delta-G solvation = 48.535834 kcal Electronic energy + Delta-G solvation = -25751.156369 eV Core-core repulsion = 22147.768277 eV Total energy + Delta-G solvation = -3603.388091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.70945 -40.53249 -39.96879 -37.63561 -35.12216 -34.12580 -33.03922 -32.48949 -31.75210 -30.70206 -30.16099 -27.18960 -25.79172 -24.62988 -23.80236 -23.40871 -23.11378 -22.21743 -21.19915 -18.91340 -18.79102 -18.04812 -17.56863 -17.48424 -16.84851 -16.56091 -16.30316 -16.10979 -15.65169 -15.46364 -15.18342 -14.93369 -14.72991 -14.41444 -14.31206 -14.20636 -14.11491 -13.90189 -13.58528 -13.32874 -13.02443 -12.81170 -12.54541 -12.43660 -12.27246 -12.05213 -11.73786 -11.52174 -11.34272 -11.15466 -10.75711 -10.51301 -10.43061 -9.77318 -9.55391 -9.40836 -9.18483 -8.11855 -6.17243 -0.31332 0.19982 0.50886 0.55120 1.17301 1.39858 1.42472 1.49873 1.54049 2.45190 2.73899 2.93476 3.13765 3.22114 3.44402 3.44794 3.58026 3.88676 3.91980 4.00691 4.03303 4.17932 4.22526 4.27802 4.33736 4.41899 4.48149 4.57886 4.70227 4.70939 4.76070 4.78874 4.95471 4.98443 5.16075 5.20337 5.26610 5.45954 5.47351 5.57522 5.62861 5.65602 5.68841 5.87108 5.99356 6.17628 6.18971 6.36108 6.50970 6.89342 6.96659 7.48734 8.99729 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.004307 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.154191 B = 6500.040804 C = 9442.970440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.052 3.948 10 C 0.147 3.853 11 H 0.075 0.925 12 N -0.674 5.674 13 C 0.136 3.864 14 C 0.035 3.965 15 C -0.179 4.179 16 C -0.198 4.198 17 C 0.159 3.841 18 N -0.510 5.510 19 C 0.109 3.891 20 C -0.165 4.165 21 C 0.059 3.941 22 O -0.202 6.202 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.130 4.130 29 H 0.259 0.741 30 H -0.005 1.005 31 H -0.012 1.012 32 H 0.341 0.659 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.200 0.800 38 H 0.160 0.840 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.239 -17.144 4.985 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.198 4.198 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.015 3.985 10 C 0.038 3.962 11 H 0.093 0.907 12 N -0.306 5.306 13 C 0.008 3.992 14 C -0.012 4.012 15 C -0.200 4.200 16 C -0.201 4.201 17 C -0.004 4.004 18 N -0.221 5.221 19 C -0.041 4.041 20 C -0.186 4.186 21 C 0.004 3.996 22 O -0.102 6.102 23 C -0.116 4.116 24 C -0.151 4.151 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.149 4.149 29 H 0.068 0.932 30 H 0.013 0.987 31 H 0.006 0.994 32 H 0.162 0.838 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.205 0.795 36 H 0.206 0.794 37 H 0.217 0.783 38 H 0.178 0.822 39 H 0.133 0.867 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.735 -16.491 5.498 20.432 hybrid contribution -0.573 0.990 -0.899 1.455 sum 10.162 -15.501 4.599 19.098 Atomic orbital electron populations 1.70086 1.07503 1.27245 1.53134 1.25819 0.95571 1.02692 0.95756 0.85673 0.78307 0.79253 0.78784 1.19275 1.21161 1.20175 1.21452 0.93320 0.91492 1.47891 0.92340 1.18860 0.93030 0.92064 0.94556 1.20480 0.92823 0.90815 0.92075 0.90686 1.60569 1.05018 1.57246 1.07762 1.20496 0.89288 0.99497 0.89953 1.22599 0.92196 0.88098 0.98293 1.22481 1.02620 1.01797 0.93148 1.21182 1.01889 0.97179 0.99857 1.22746 0.91282 0.99299 0.87063 1.67855 1.10020 1.12199 1.31990 1.23083 0.97480 0.89721 0.93818 1.21377 0.98655 1.03911 0.94614 1.20345 0.97330 0.95175 0.86703 1.83944 1.47647 1.45666 1.32985 1.20875 0.99661 0.96503 0.94593 1.21045 0.99371 0.96608 0.98026 1.21384 0.98238 0.95190 0.98876 1.21465 1.00069 1.00960 0.92244 1.21431 0.97332 0.95110 0.99963 1.21247 1.00362 0.96568 0.96708 0.93217 0.98657 0.99361 0.83821 0.89724 0.89674 0.79486 0.79368 0.78290 0.82235 0.86676 0.83973 0.83435 0.83863 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 3 Si 0.95 45.86 29.54 68.60 2.03 47.89 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.50 -28.53 8.84 25.60 0.23 -28.30 16 8 H 0.06 3.27 7.74 -2.92 -0.02 3.25 16 9 C 0.05 2.70 4.63 29.85 0.14 2.84 16 10 C 0.15 5.73 2.16 44.17 0.10 5.82 16 11 H 0.07 2.92 7.74 -2.39 -0.02 2.90 16 12 N -0.67 -24.07 5.96 -499.46 -2.98 -27.05 16 13 C 0.14 3.92 5.99 85.56 0.51 4.43 16 14 C 0.04 1.02 6.70 24.73 0.17 1.19 16 15 C -0.18 -4.32 11.00 23.50 0.26 -4.06 16 16 C -0.20 -5.02 6.44 -20.23 -0.13 -5.15 16 17 C 0.16 3.40 11.26 84.92 0.96 4.36 16 18 N -0.51 -11.39 10.35 -195.23 -2.02 -13.41 16 19 C 0.11 2.11 11.14 84.53 0.94 3.05 16 20 C -0.17 -3.72 10.13 22.39 0.23 -3.49 16 21 C 0.06 1.69 7.49 23.13 0.17 1.87 16 22 O -0.20 -6.63 10.57 -5.50 -0.06 -6.69 16 23 C -0.11 -3.74 4.56 -19.87 -0.09 -3.84 16 24 C -0.13 -3.88 9.15 22.27 0.20 -3.68 16 25 C -0.12 -2.82 10.05 22.27 0.22 -2.60 16 26 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 27 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 28 C -0.13 -3.79 9.67 22.27 0.22 -3.58 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 32 H 0.34 11.52 6.33 -89.70 -0.57 10.95 16 33 H 0.09 2.05 7.85 -2.39 -0.02 2.03 16 34 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 35 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.12 3.38 6.49 -2.91 -0.02 3.36 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.12 3.39 8.04 -2.91 -0.02 3.37 16 Total: -1.00 -72.08 369.11 2.74 -69.34 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.46 Total: 23.41 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 5.03 Total: -35.97 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -4.71 Total: -97.97 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.06 Total: -6.69 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -72.08 2.74 -69.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661985830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.871 kcal (2) G-P(sol) polarization free energy of solvation -72.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds