Wall clock time and date at job start Tue Mar 31 2020 13:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00141 * 2 1 4 4 H 1.48498 * 109.47155 * 269.99633 * 3 2 1 5 5 H 1.48497 * 109.46895 * 29.99902 * 3 2 1 6 6 H 1.48502 * 109.47062 * 149.99945 * 3 2 1 7 7 C 1.39933 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 176.80558 * 7 2 1 9 9 C 1.41404 * 120.00189 * 356.80015 * 7 2 1 10 10 C 1.40781 * 120.20507 * 34.25011 * 9 7 2 11 11 C 1.37638 * 119.88204 * 180.02562 * 10 9 7 12 12 C 1.38537 * 120.32424 * 0.02562 * 11 10 9 13 13 C 1.39251 * 120.42694 * 359.96368 * 12 11 10 14 14 N 1.39953 * 119.94700 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99739 * 149.99775 * 14 13 12 16 16 O 1.21586 * 120.00235 * 354.15776 * 15 14 13 17 17 N 1.34775 * 119.99841 * 174.14600 * 15 14 13 18 18 C 1.46496 * 120.00365 * 180.27665 * 17 15 14 19 19 C 1.50694 * 109.47460 * 179.72721 * 18 17 15 20 20 C 1.32572 * 119.99996 * 125.93922 * 19 18 17 21 21 C 1.47809 * 119.99831 * 8.47466 * 20 19 18 22 22 C 1.39539 * 120.14065 * 217.45838 * 21 20 19 23 23 C 1.37974 * 119.85426 * 179.67494 * 22 21 20 24 24 C 1.38339 * 120.14157 * 0.61993 * 23 22 21 25 25 C 1.38337 * 120.28691 * 359.67949 * 24 23 22 26 26 C 1.37969 * 120.14496 * 359.97438 * 25 24 23 27 27 C 1.38277 * 120.10399 * 0.26777 * 13 12 11 28 28 H 0.97004 * 119.99688 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.05945 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.84396 * 179.97438 * 11 10 9 31 31 H 1.07991 * 119.79102 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99841 * 330.00624 * 14 13 12 33 33 H 0.97006 * 120.00060 * 0.02562 * 17 15 14 34 34 H 1.09002 * 109.46957 * 299.73142 * 18 17 15 35 35 H 1.09001 * 109.46951 * 59.73046 * 18 17 15 36 36 H 1.07999 * 120.00314 * 305.94288 * 19 18 17 37 37 H 1.08004 * 120.00119 * 188.47002 * 20 19 18 38 38 H 1.08002 * 120.07103 * 359.97438 * 22 21 20 39 39 H 1.08004 * 119.92743 * 180.31608 * 23 22 21 40 40 H 1.07998 * 119.85364 * 179.69525 * 24 23 22 41 41 H 1.08007 * 119.92591 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.07385 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.15814 * 179.74520 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0867 -1.2126 -0.0516 9 6 1.3026 -2.4355 0.0694 10 6 0.0459 -2.5646 -0.5519 11 6 -0.6351 -3.7585 -0.4802 12 6 -0.0903 -4.8347 0.2012 13 6 1.1518 -4.7217 0.8204 14 7 1.6925 -5.8151 1.5065 15 6 3.0293 -5.9707 1.5795 16 8 3.7630 -5.2234 0.9618 17 7 3.5528 -6.9547 2.3373 18 6 5.0059 -7.1201 2.4215 19 6 5.3279 -8.2777 3.3311 20 6 6.1039 -9.2628 2.9009 21 6 6.8040 -9.1399 1.6050 22 6 6.9465 -10.2542 0.7772 23 6 7.5952 -10.1313 -0.4343 24 6 8.1150 -8.9097 -0.8232 25 6 7.9826 -7.8026 -0.0043 26 6 7.3299 -7.9104 1.2064 27 6 1.8491 -3.5290 0.7635 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3830 -1.7283 -1.0838 30 1 -1.5993 -3.8568 -0.9567 31 1 -0.6323 -5.7674 0.2524 32 1 1.1052 -6.4610 1.9293 33 1 2.9674 -7.5511 2.8299 34 1 5.4075 -7.3165 1.4274 35 1 5.4528 -6.2095 2.8205 36 1 4.9264 -8.3050 4.3333 37 1 6.2246 -10.1550 3.4975 38 1 6.5455 -11.2096 1.0820 39 1 7.7016 -10.9918 -1.0783 40 1 8.6263 -8.8199 -1.7703 41 1 8.3904 -6.8516 -0.3139 42 1 7.2269 -7.0453 1.8447 43 1 2.8107 -3.4391 1.2469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677653972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:00 Heat of formation + Delta-G solvation = 42.305395 kcal Electronic energy + Delta-G solvation = -25139.111559 eV Core-core repulsion = 21535.453295 eV Total energy + Delta-G solvation = -3603.658263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03044 -39.44730 -37.38628 -35.92851 -34.30562 -33.50883 -32.80988 -31.19552 -29.88339 -29.71368 -28.10416 -26.08473 -25.18879 -22.74425 -22.69285 -21.52474 -20.78388 -20.18651 -19.45150 -17.88904 -17.63310 -16.77197 -16.10266 -15.57738 -15.47406 -15.36138 -14.88690 -14.60059 -14.37999 -14.23642 -14.01276 -13.62854 -13.28308 -13.02830 -12.81343 -12.78099 -12.51057 -12.11582 -11.94752 -11.60482 -11.25989 -11.12583 -11.08996 -11.01297 -10.88097 -10.37298 -10.25402 -10.10308 -9.63961 -9.38971 -9.22607 -9.11826 -8.86013 -8.73851 -8.50428 -7.29308 -6.76881 -6.48877 -4.29525 0.76131 1.23044 1.99201 2.81221 2.95836 3.15663 3.18387 3.20852 3.28325 3.66254 3.78936 4.06461 4.43542 4.61294 4.64519 4.74327 4.80532 4.80623 4.93707 5.12439 5.26048 5.35814 5.54238 5.66522 5.75323 5.76402 5.85953 6.07371 6.14582 6.28051 6.32872 6.35898 6.43179 6.46275 6.64018 6.80286 6.82227 6.85749 7.11652 7.20132 7.35920 7.44178 7.78543 7.87999 8.07065 8.22266 8.35460 8.50918 8.78171 8.99213 9.07177 9.11502 10.39732 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.002619 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.733750 B =10687.556277 C =11499.424451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.075 0.925 9 C 0.115 3.885 10 C -0.162 4.162 11 C -0.098 4.098 12 C -0.254 4.254 13 C 0.163 3.837 14 N -0.681 5.681 15 C 0.698 3.302 16 O -0.565 6.565 17 N -0.748 5.748 18 C 0.152 3.848 19 C -0.160 4.160 20 C -0.101 4.101 21 C -0.067 4.067 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.104 4.104 27 C -0.203 4.203 28 H 0.276 0.724 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.394 0.606 33 H 0.392 0.608 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.569 -18.434 5.209 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.113 3.887 10 C -0.182 4.182 11 C -0.118 4.118 12 C -0.276 4.276 13 C 0.070 3.930 14 N -0.327 5.327 15 C 0.398 3.602 16 O -0.440 6.440 17 N -0.405 5.405 18 C 0.029 3.971 19 C -0.178 4.178 20 C -0.120 4.120 21 C -0.067 4.067 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.122 4.122 27 C -0.225 4.225 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.227 0.773 33 H 0.225 0.775 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.106 -17.556 4.657 21.290 hybrid contribution -0.343 0.038 0.611 0.702 sum 10.763 -17.519 5.269 21.225 Atomic orbital electron populations 1.69768 1.07222 1.28469 1.38759 1.25849 0.94912 1.01017 0.92627 0.86225 0.80268 0.80591 0.79037 1.19550 1.20397 1.18754 1.19522 0.94645 0.89996 1.44982 0.90636 1.17549 0.91828 0.91537 0.87829 1.21607 0.97459 0.96327 1.02846 1.20515 0.98170 0.93735 0.99336 1.20058 0.97984 0.99013 1.10515 1.17270 0.94083 0.85448 0.96179 1.42579 1.04754 1.28075 1.57254 1.15954 0.82613 0.81265 0.80360 1.90968 1.59032 1.46072 1.47934 1.45118 1.07268 1.35488 1.52653 1.20673 0.80199 0.96484 0.99748 1.23366 0.99739 0.95394 0.99289 1.21725 0.97691 0.98179 0.94434 1.19080 0.99110 0.93684 0.94871 1.21224 0.98975 0.97980 0.94448 1.21085 0.98722 0.97757 0.96630 1.21251 0.99644 0.92983 0.99616 1.21170 0.98992 0.98929 0.94486 1.21499 0.96927 0.96693 0.97054 1.21223 1.02257 0.92308 1.06684 0.91320 0.85393 0.89004 0.89337 0.77309 0.77506 0.89665 0.90894 0.85793 0.85665 0.85995 0.86049 0.86048 0.85623 0.85316 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.85 10.61 55.55 0.59 -21.26 16 2 C 0.07 1.86 5.41 -17.35 -0.09 1.76 16 3 Si 0.91 19.85 29.56 -169.99 -5.03 14.82 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -13.02 9.04 -37.74 -0.34 -13.36 16 8 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 9 C 0.12 3.26 5.55 -106.85 -0.59 2.67 16 10 C -0.16 -4.37 8.67 -38.84 -0.34 -4.71 16 11 C -0.10 -2.35 10.02 -39.69 -0.40 -2.75 16 12 C -0.25 -5.70 9.96 -39.09 -0.39 -6.09 16 13 C 0.16 3.79 6.33 -83.76 -0.53 3.26 16 14 N -0.68 -12.57 5.36 -14.27 -0.08 -12.65 16 15 C 0.70 13.12 8.31 -86.92 -0.72 12.40 16 16 O -0.56 -13.30 13.84 5.29 0.07 -13.23 16 17 N -0.75 -10.00 5.55 -66.42 -0.37 -10.37 16 18 C 0.15 1.86 4.44 -5.20 -0.02 1.83 16 19 C -0.16 -1.38 9.57 -36.22 -0.35 -1.72 16 20 C -0.10 -0.84 9.79 -37.57 -0.37 -1.21 16 21 C -0.07 -0.68 5.16 -105.01 -0.54 -1.22 16 22 C -0.11 -1.00 9.79 -39.19 -0.38 -1.39 16 23 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 24 C -0.12 -1.13 10.04 -39.51 -0.40 -1.53 16 25 C -0.12 -1.25 10.03 -39.64 -0.40 -1.65 16 26 C -0.10 -1.13 7.30 -39.20 -0.29 -1.42 16 27 C -0.20 -5.43 8.41 -38.69 -0.33 -5.75 16 28 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.13 3.55 6.14 -52.49 -0.32 3.23 16 30 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.39 5.58 8.82 -40.82 -0.36 5.22 16 33 H 0.39 3.89 8.49 -40.82 -0.35 3.54 16 34 H 0.09 1.18 4.75 -51.93 -0.25 0.94 16 35 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.13 1.36 6.34 -52.48 -0.33 1.02 16 43 H 0.11 3.12 6.19 -52.49 -0.32 2.79 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -33.21 363.45 -11.48 -44.70 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.28 Total: 14.93 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -6.87 Total: -22.41 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.14 Total: -44.28 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.21 -11.48 -44.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677653972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.001 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds