Wall clock time and date at job start Tue Mar 31 2020 12:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34595 * 119.48205 * 2 1 4 4 C 1.37990 * 120.46190 * 180.02562 * 3 2 1 5 5 C 1.47456 * 120.25979 * 179.97438 * 4 3 2 6 6 O 1.21608 * 119.99670 * 0.02703 * 5 4 3 7 7 N 1.34776 * 120.00443 * 180.02562 * 5 4 3 8 8 N 1.40098 * 120.00496 * 179.97438 * 7 5 4 9 9 C 1.34768 * 120.00298 * 180.02562 * 8 7 5 10 10 O 1.21590 * 120.00130 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99949 * 359.97438 * 9 8 7 12 12 C 1.46506 * 119.99941 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46788 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47061 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47087 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99843 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99673 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00131 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47247 * 59.99797 * 19 17 15 21 21 H 1.48505 * 109.46897 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47141 * 299.99745 * 19 17 15 23 23 C 1.41600 * 119.48271 * 359.97438 * 4 3 2 24 24 C 1.35970 * 119.01189 * 359.97438 * 23 4 3 25 25 C 1.34547 * 119.47504 * 180.23722 * 2 1 3 26 26 O 1.21959 * 119.75065 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.46811 * 89.99699 * 1 2 3 28 28 H 1.08992 * 109.47193 * 210.00416 * 1 2 3 29 29 H 1.09001 * 109.47061 * 330.00183 * 1 2 3 30 30 H 1.08009 * 119.76801 * 359.97438 * 3 2 1 31 31 H 0.96998 * 119.99739 * 0.02562 * 7 5 4 32 32 H 0.97008 * 119.99794 * 0.02562 * 8 7 5 33 33 H 0.97001 * 119.99982 * 0.02562 * 11 9 8 34 34 H 1.08992 * 109.47090 * 300.00520 * 12 11 9 35 35 H 1.09008 * 109.46681 * 60.00690 * 12 11 9 36 36 H 1.08997 * 109.47552 * 300.00508 * 13 12 11 37 37 H 1.09000 * 109.47258 * 60.00468 * 13 12 11 38 38 H 1.09005 * 109.46836 * 300.00125 * 14 13 12 39 39 H 1.09000 * 109.47073 * 59.99901 * 14 13 12 40 40 H 0.97000 * 120.00242 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.49230 * 180.02562 * 23 4 3 42 42 H 1.08002 * 120.24734 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1275 1.1717 0.0000 4 6 3.5072 1.1953 -0.0005 5 6 4.2283 2.4814 -0.0011 6 8 3.6070 3.5268 -0.0006 7 7 5.5760 2.4985 -0.0021 8 7 6.2612 3.7205 -0.0032 9 6 7.6088 3.7375 -0.0048 10 8 8.2034 4.7980 -0.0053 11 7 8.2973 2.5788 -0.0048 12 6 9.7622 2.5973 -0.0070 13 6 10.2903 1.1614 -0.0072 14 6 11.8202 1.1806 -0.0089 15 6 12.3404 -0.2338 -0.0097 16 1 11.6489 -1.0634 -0.0094 17 6 13.6990 -0.4687 -0.0118 18 7 14.5410 0.5416 -0.0136 19 14 14.3438 -2.2218 -0.0135 20 1 13.8558 -2.9276 -1.2255 21 1 15.8287 -2.2031 -0.0150 22 1 13.8594 -2.9285 1.1995 23 6 4.2250 -0.0253 -0.0005 24 6 3.5344 -1.1965 0.0005 25 6 2.1271 -1.1713 -0.0048 26 8 1.5031 -2.2192 -0.0087 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.5752 2.0999 -0.0004 31 1 6.0715 1.6646 -0.0029 32 1 5.7656 4.5544 -0.0028 33 1 7.8229 1.7327 -0.0040 34 1 10.1177 3.1149 -0.8979 35 1 10.1204 3.1164 0.8821 36 1 9.9348 0.6433 0.8835 37 1 9.9321 0.6426 -0.8964 38 1 12.1760 1.6987 -0.8995 39 1 12.1781 1.6992 0.8805 40 1 15.4968 0.3764 -0.0147 41 1 5.3050 -0.0258 -0.0005 42 1 4.0618 -2.1390 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678788748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:28 Heat of formation + Delta-G solvation = -59.744449 kcal Electronic energy + Delta-G solvation = -25728.283484 eV Core-core repulsion = 21709.350745 eV Total energy + Delta-G solvation = -4018.932740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.64634 -41.60644 -40.36200 -38.08199 -37.03285 -36.89889 -35.85153 -35.13642 -33.00810 -32.23339 -30.92236 -28.75424 -28.43048 -25.59788 -25.08377 -24.28898 -22.66257 -22.32199 -22.16632 -20.32304 -19.36814 -18.53737 -18.34399 -18.19026 -17.48840 -17.31453 -17.05560 -16.66417 -16.63566 -16.32396 -16.15799 -15.59005 -15.47386 -15.32361 -15.24739 -14.33452 -14.29091 -14.22207 -13.71669 -13.59983 -13.43896 -13.20256 -12.88864 -12.70323 -12.52647 -12.48364 -12.37889 -11.94824 -11.62028 -11.46118 -11.34316 -11.26482 -11.21628 -11.15619 -10.50431 -10.30844 -9.52378 -9.12953 -8.15533 -6.26256 -0.29650 0.14094 0.64993 1.45119 1.47299 1.48840 1.54927 1.65635 1.92279 1.99056 2.45320 2.59148 3.18747 3.19700 3.54022 3.64280 3.73952 3.88430 4.04046 4.16616 4.28838 4.34325 4.39136 4.60380 4.74598 4.82398 4.87345 4.95657 5.00684 5.01149 5.20575 5.25779 5.32222 5.36708 5.52177 5.59024 5.77304 5.80309 5.89651 6.19983 6.26696 6.55682 6.75184 6.91903 7.13040 7.33942 7.43258 8.96147 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.002378 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.541976 B =11773.021643 C =14038.509390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.486 5.486 3 C 0.234 3.766 4 C -0.256 4.256 5 C 0.590 3.410 6 O -0.567 6.567 7 N -0.513 5.513 8 N -0.525 5.525 9 C 0.712 3.288 10 O -0.615 6.615 11 N -0.723 5.723 12 C 0.145 3.855 13 C -0.102 4.102 14 C 0.022 3.978 15 C -0.538 4.538 16 H 0.069 0.931 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.266 1.266 23 C 0.016 3.984 24 C -0.255 4.255 25 C 0.502 3.498 26 O -0.584 6.584 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.207 0.793 31 H 0.432 0.568 32 H 0.443 0.557 33 H 0.408 0.592 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.073 0.927 38 H -0.008 1.008 39 H -0.007 1.007 40 H 0.262 0.738 41 H 0.169 0.831 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.562 -0.298 0.098 30.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.191 5.191 3 C 0.099 3.901 4 C -0.265 4.265 5 C 0.379 3.621 6 O -0.446 6.446 7 N -0.266 5.266 8 N -0.281 5.281 9 C 0.411 3.589 10 O -0.492 6.492 11 N -0.380 5.380 12 C 0.021 3.979 13 C -0.140 4.140 14 C -0.016 4.016 15 C -0.576 4.576 16 H 0.087 0.913 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.190 1.190 23 C -0.005 4.005 24 C -0.276 4.276 25 C 0.306 3.694 26 O -0.469 6.469 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.145 0.855 30 H 0.224 0.776 31 H 0.278 0.722 32 H 0.289 0.711 33 H 0.245 0.755 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.070 0.930 41 H 0.186 0.814 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -30.694 0.410 0.098 30.697 hybrid contribution 0.777 -1.023 -0.023 1.285 sum -29.917 -0.613 0.075 29.923 Atomic orbital electron populations 1.22616 0.74377 1.06723 1.05795 1.45340 1.11279 1.06288 1.56216 1.22630 0.92677 0.90531 0.84223 1.18849 0.92866 0.92234 1.22595 1.17752 0.79719 0.88999 0.75623 1.90837 1.67074 1.34229 1.52425 1.44612 1.04816 1.00323 1.76886 1.44362 1.01730 1.01187 1.80844 1.15772 0.80224 0.84752 0.78147 1.91022 1.66347 1.31425 1.60379 1.45014 1.07530 1.06764 1.78724 1.21226 0.76940 0.98533 1.01217 1.21616 0.96305 0.93510 1.02584 1.18951 0.91645 0.95811 0.95179 1.21669 0.92067 0.93692 1.50143 0.91260 1.25999 0.97753 1.01406 0.95016 1.70102 1.02730 1.32898 1.51828 0.85519 0.76751 0.79621 0.79251 1.19035 1.21575 1.19041 1.21682 1.01945 0.89828 0.87031 1.22062 0.91553 1.01290 1.12719 1.17696 0.90357 0.82745 0.78580 1.90943 1.70475 1.31560 1.53919 0.88756 0.89650 0.85519 0.77587 0.72243 0.71104 0.75525 0.92837 0.92826 0.90861 0.90861 0.98912 0.98900 0.92951 0.81402 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.33 127.77 1.32 1.51 16 2 N -0.49 -4.65 2.95 -673.10 -1.99 -6.64 16 3 C 0.23 1.60 9.85 84.21 0.83 2.43 16 4 C -0.26 -2.29 5.88 -20.08 -0.12 -2.41 16 5 C 0.59 7.84 7.88 86.67 0.68 8.52 16 6 O -0.57 -10.87 16.16 -4.06 -0.07 -10.93 16 7 N -0.51 -6.49 6.21 -175.86 -1.09 -7.59 16 8 N -0.53 -10.24 6.26 -184.75 -1.16 -11.40 16 9 C 0.71 18.73 8.68 179.06 1.55 20.29 16 10 O -0.61 -22.23 17.18 -4.00 -0.07 -22.30 16 11 N -0.72 -16.56 5.52 -478.53 -2.64 -19.20 16 12 C 0.15 4.51 5.67 86.38 0.49 5.00 16 13 C -0.10 -3.45 5.27 30.59 0.16 -3.29 16 14 C 0.02 1.07 4.97 29.85 0.15 1.22 16 15 C -0.54 -28.48 9.11 25.60 0.23 -28.25 16 16 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 18 N -0.94 -55.79 13.29 21.45 0.28 -55.51 16 19 Si 0.96 42.47 29.54 68.60 2.03 44.50 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 C 0.02 0.12 9.57 22.57 0.22 0.34 16 24 C -0.25 -3.15 9.97 22.36 0.22 -2.93 16 25 C 0.50 8.39 7.40 84.89 0.63 9.02 16 26 O -0.58 -14.66 16.59 -5.18 -0.09 -14.75 16 27 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.08 0.68 7.37 -2.39 -0.02 0.66 16 29 H 0.13 -0.35 8.00 -2.39 -0.02 -0.36 16 30 H 0.21 0.40 7.57 -2.91 -0.02 0.37 16 31 H 0.43 3.05 4.76 -213.32 -1.02 2.03 16 32 H 0.44 8.94 8.10 -213.31 -1.73 7.21 16 33 H 0.41 5.97 6.39 -92.71 -0.59 5.37 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.17 0.18 6.48 -2.91 -0.02 0.16 16 42 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -82.76 364.82 -0.20 -82.97 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -2.25 Total: 9.16 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.83 Total: 11.68 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -6.59 Total: -100.33 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -0.22 Total: -47.98 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -82.76 -0.20 -82.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678788748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.222 kcal (2) G-P(sol) polarization free energy of solvation -82.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds