Wall clock time and date at job start Tue Mar 31 2020 12:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98445 * 359.72680 * 4 3 2 6 6 C 1.38105 * 120.01857 * 179.72828 * 5 4 3 7 7 C 1.38859 * 119.98477 * 0.56528 * 6 5 4 8 8 N 1.39931 * 120.02350 * 179.68442 * 7 6 5 9 9 N 1.40100 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00455 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00504 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99903 * 359.97438 * 10 9 8 13 13 C 1.46493 * 119.99816 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47195 * 180.02562 * 13 12 10 15 15 O 1.21296 * 119.99631 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00635 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00408 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99987 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00040 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00026 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00072 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47713 * 89.99677 * 21 19 17 23 23 H 1.48504 * 109.46864 * 209.99558 * 21 19 17 24 24 H 1.48506 * 109.47198 * 329.99031 * 21 19 17 25 25 C 1.38869 * 119.95835 * 359.70587 * 7 6 5 26 26 C 1.38104 * 119.97993 * 359.97438 * 25 7 6 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 1.07993 * 119.98781 * 359.97438 * 5 4 3 33 33 H 1.08007 * 120.00898 * 180.26980 * 6 5 4 34 34 H 0.97005 * 120.00541 * 180.02562 * 8 7 6 35 35 H 0.97005 * 119.99883 * 0.02562 * 9 8 7 36 36 H 0.96999 * 119.99476 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.47322 * 299.99892 * 13 12 10 38 38 H 1.08996 * 109.47712 * 59.99790 * 13 12 10 39 39 H 0.97007 * 119.99298 * 0.02562 * 16 14 13 40 40 H 0.96997 * 120.00288 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.00689 * 179.97438 * 25 7 6 42 42 H 1.08002 * 119.98723 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0068 6 6 5.5684 0.6055 0.0017 7 6 6.0995 1.8885 0.0021 8 7 7.4868 2.0719 0.0036 9 7 8.3403 0.9610 0.0041 10 6 9.6764 1.1376 0.0061 11 8 10.4172 0.1734 0.0060 12 7 10.1915 2.3831 0.0070 13 6 11.6438 2.5751 0.0086 14 6 11.9557 4.0495 0.0101 15 8 11.0534 4.8602 0.0094 16 7 13.2370 4.4674 0.0122 17 6 13.5206 5.8086 0.0130 18 1 12.7172 6.5305 0.0124 19 6 14.8416 6.2394 0.0157 20 7 15.1135 7.5251 0.0170 21 14 16.2311 4.9909 0.0175 22 1 16.6020 4.6608 -1.3820 23 1 17.4084 5.5617 0.7200 24 1 15.7878 3.7578 0.7162 25 6 5.2532 2.9895 0.0016 26 6 3.8842 2.8075 0.0000 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7859 -0.5724 0.0116 33 1 6.2259 -0.2513 0.0021 34 1 7.8576 2.9683 0.0043 35 1 7.9696 0.0646 0.0030 36 1 9.6006 3.1523 0.0067 37 1 12.0705 2.1130 0.8989 38 1 12.0724 2.1136 -0.8810 39 1 13.9585 3.8190 0.0124 40 1 16.0357 7.8258 0.0185 41 1 5.6655 3.9877 0.0023 42 1 3.2258 3.6637 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680958213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:38 Heat of formation + Delta-G solvation = -26.023050 kcal Electronic energy + Delta-G solvation = -25486.559804 eV Core-core repulsion = 21469.089334 eV Total energy + Delta-G solvation = -4017.470470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58490 -40.04324 -38.58654 -38.14176 -35.90089 -34.61761 -33.80704 -32.37408 -31.84996 -31.54863 -30.85888 -27.87859 -27.45061 -24.61560 -24.29485 -22.67451 -21.89546 -20.86632 -19.85619 -19.20399 -18.75964 -18.32307 -18.02997 -16.38838 -16.37569 -15.86641 -15.80231 -15.73601 -15.11880 -14.98507 -14.45340 -14.44249 -14.27204 -13.82977 -13.79617 -13.66237 -13.20146 -13.09563 -13.06471 -12.63686 -12.55932 -12.27329 -12.22585 -12.02197 -11.68265 -11.27425 -11.02438 -10.85834 -10.67805 -10.49167 -10.10302 -9.74746 -9.33453 -9.23001 -8.91836 -8.84389 -8.35396 -7.20446 -6.45001 -3.97940 1.06546 1.33925 1.85155 2.95154 2.96411 3.01156 3.04431 3.06738 3.10602 3.50264 3.58148 3.99863 4.40120 4.46788 4.53605 4.55597 4.67055 4.76974 4.84643 4.97405 5.07355 5.09861 5.21629 5.38654 5.45149 5.58368 5.61341 5.69684 5.70358 5.75468 5.78336 6.05823 6.11530 6.22652 6.39439 6.44897 7.00376 7.19613 7.35000 7.39991 7.94859 8.09914 8.37996 8.46760 8.76801 9.24767 9.57227 10.66943 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.001917 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.479981 B =14600.745035 C =15463.473204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.320 6.320 4 C 0.072 3.928 5 C -0.155 4.155 6 C -0.159 4.159 7 C 0.189 3.811 8 N -0.551 5.551 9 N -0.534 5.534 10 C 0.714 3.286 11 O -0.584 6.584 12 N -0.721 5.721 13 C 0.124 3.876 14 C 0.437 3.563 15 O -0.581 6.581 16 N -0.573 5.573 17 C -0.312 4.312 18 H 0.122 0.878 19 C 0.046 3.954 20 N -0.872 5.872 21 Si 0.879 3.121 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.267 1.267 25 C -0.147 4.147 26 C -0.095 4.095 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.427 0.573 35 H 0.430 0.570 36 H 0.404 0.596 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.375 0.625 40 H 0.276 0.724 41 H 0.136 0.864 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.881 -15.882 -0.045 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.026 3.974 5 C -0.174 4.174 6 C -0.183 4.183 7 C 0.087 3.913 8 N -0.283 5.283 9 N -0.289 5.289 10 C 0.413 3.587 11 O -0.459 6.459 12 N -0.380 5.380 13 C -0.005 4.005 14 C 0.222 3.778 15 O -0.466 6.466 16 N -0.210 5.210 17 C -0.440 4.440 18 H 0.140 0.860 19 C -0.158 4.158 20 N -0.511 5.511 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.192 1.192 25 C -0.170 4.170 26 C -0.115 4.115 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.271 0.729 35 H 0.275 0.725 36 H 0.243 0.757 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.208 0.792 40 H 0.087 0.913 41 H 0.154 0.846 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.641 -15.717 -0.043 27.561 hybrid contribution 1.121 -0.739 0.018 1.343 sum -21.520 -16.457 -0.025 27.091 Atomic orbital electron populations 1.21770 0.92933 1.02730 1.03496 1.22712 0.95727 0.82380 1.01150 1.86060 1.19026 1.28718 1.89645 1.18744 0.82255 0.93951 1.02490 1.20939 0.93281 0.98046 1.05146 1.20210 0.94841 0.95020 1.08197 1.17619 0.81115 0.94345 0.98177 1.43400 0.98995 1.00901 1.85030 1.44355 1.00218 1.02609 1.81680 1.15578 0.80377 0.84230 0.78520 1.91006 1.55494 1.39796 1.59640 1.44745 1.08186 1.06430 1.78647 1.20879 0.80011 0.96025 1.03574 1.19590 0.83845 0.89045 0.85273 1.90528 1.45149 1.54954 1.55947 1.42100 1.05513 1.08311 1.65123 1.19441 0.94794 0.80941 1.48828 0.86039 1.25068 0.97490 0.96240 0.97021 1.69614 1.20493 1.13129 1.47863 0.86670 0.82572 0.81081 0.79170 1.19358 1.19942 1.19199 1.20338 0.91941 0.97689 1.07057 1.20144 0.94064 0.94956 1.02312 0.91556 0.91550 0.90529 0.92280 0.92285 0.85516 0.86203 0.72939 0.72483 0.75729 0.89550 0.89531 0.79184 0.91323 0.84632 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.28 37.16 0.38 -0.34 16 2 C 0.06 0.35 5.46 37.16 0.20 0.55 16 3 O -0.32 -3.02 10.14 -19.72 -0.20 -3.22 16 4 C 0.07 0.70 6.69 -39.24 -0.26 0.44 16 5 C -0.15 -1.37 9.03 -39.46 -0.36 -1.72 16 6 C -0.16 -1.48 9.48 -39.40 -0.37 -1.86 16 7 C 0.19 1.91 6.72 -83.70 -0.56 1.35 16 8 N -0.55 -5.87 6.46 32.44 0.21 -5.66 16 9 N -0.53 -6.27 6.22 27.64 0.17 -6.10 16 10 C 0.71 10.73 8.68 -86.91 -0.75 9.98 16 11 O -0.58 -10.45 17.18 5.29 0.09 -10.36 16 12 N -0.72 -11.13 5.49 -66.42 -0.36 -11.50 16 13 C 0.12 2.07 6.15 -5.20 -0.03 2.03 16 14 C 0.44 9.28 7.85 -10.99 -0.09 9.20 16 15 O -0.58 -14.12 15.24 5.54 0.08 -14.04 16 16 N -0.57 -12.97 5.09 -10.96 -0.06 -13.03 16 17 C -0.31 -8.42 10.16 -14.94 -0.15 -8.57 16 18 H 0.12 3.74 7.39 -52.48 -0.39 3.35 16 19 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 20 N -0.87 -24.55 13.96 55.50 0.77 -23.77 16 21 Si 0.88 18.67 27.74 -169.99 -4.71 13.96 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 25 C -0.15 -1.37 9.89 -39.40 -0.39 -1.76 16 26 C -0.10 -0.90 9.98 -39.46 -0.39 -1.29 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 32 H 0.13 0.86 6.29 -52.49 -0.33 0.53 16 33 H 0.12 0.94 6.20 -52.48 -0.33 0.62 16 34 H 0.43 4.48 6.72 -182.59 -1.23 3.25 16 35 H 0.43 4.32 6.71 -182.59 -1.22 3.10 16 36 H 0.40 6.08 5.36 -40.82 -0.22 5.86 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 40 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -32.92 358.99 -8.34 -41.25 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -6.87 Total: 17.93 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -2.87 Total: 9.13 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.74 Total: -60.06 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.02 Total: -27.62 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.71 Total: 13.96 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.92 -8.34 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.230 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds