Wall clock time and date at job start Tue Mar 31 2020 12:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98445 * 359.72680 * 4 3 2 6 6 C 1.38105 * 120.01857 * 179.72828 * 5 4 3 7 7 C 1.38859 * 119.98477 * 0.56528 * 6 5 4 8 8 N 1.39931 * 120.02350 * 179.68442 * 7 6 5 9 9 N 1.40100 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00455 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00504 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99903 * 359.97438 * 10 9 8 13 13 C 1.46493 * 119.99816 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47195 * 180.02562 * 13 12 10 15 15 O 1.21296 * 119.99631 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00635 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00408 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99987 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00040 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00026 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00072 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47713 * 89.99677 * 21 19 17 23 23 H 1.48504 * 109.46864 * 209.99558 * 21 19 17 24 24 H 1.48506 * 109.47198 * 329.99031 * 21 19 17 25 25 C 1.38869 * 119.95835 * 359.70587 * 7 6 5 26 26 C 1.38104 * 119.97993 * 359.97438 * 25 7 6 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 1.07993 * 119.98781 * 359.97438 * 5 4 3 33 33 H 1.08007 * 120.00898 * 180.26980 * 6 5 4 34 34 H 0.97005 * 120.00541 * 180.02562 * 8 7 6 35 35 H 0.97005 * 119.99883 * 0.02562 * 9 8 7 36 36 H 0.96999 * 119.99476 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.47322 * 299.99892 * 13 12 10 38 38 H 1.08996 * 109.47712 * 59.99790 * 13 12 10 39 39 H 0.97007 * 119.99298 * 0.02562 * 16 14 13 40 40 H 0.96997 * 120.00288 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.00689 * 179.97438 * 25 7 6 42 42 H 1.08002 * 119.98723 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0068 6 6 5.5684 0.6055 0.0017 7 6 6.0995 1.8885 0.0021 8 7 7.4868 2.0719 0.0036 9 7 8.3403 0.9610 0.0041 10 6 9.6764 1.1376 0.0061 11 8 10.4172 0.1734 0.0060 12 7 10.1915 2.3831 0.0070 13 6 11.6438 2.5751 0.0086 14 6 11.9557 4.0495 0.0101 15 8 11.0534 4.8602 0.0094 16 7 13.2370 4.4674 0.0122 17 6 13.5206 5.8086 0.0130 18 1 12.7172 6.5305 0.0124 19 6 14.8416 6.2394 0.0157 20 7 15.1135 7.5251 0.0170 21 14 16.2311 4.9909 0.0175 22 1 16.6020 4.6608 -1.3820 23 1 17.4084 5.5617 0.7200 24 1 15.7878 3.7578 0.7162 25 6 5.2532 2.9895 0.0016 26 6 3.8842 2.8075 0.0000 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7859 -0.5724 0.0116 33 1 6.2259 -0.2513 0.0021 34 1 7.8576 2.9683 0.0043 35 1 7.9696 0.0646 0.0030 36 1 9.6006 3.1523 0.0067 37 1 12.0705 2.1130 0.8989 38 1 12.0724 2.1136 -0.8810 39 1 13.9585 3.8190 0.0124 40 1 16.0357 7.8258 0.0185 41 1 5.6655 3.9877 0.0023 42 1 3.2258 3.6637 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680958213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:37 Heat of formation + Delta-G solvation = -50.991549 kcal Electronic energy + Delta-G solvation = -25487.642519 eV Core-core repulsion = 21469.089334 eV Total energy + Delta-G solvation = -4018.553186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58159 -40.95558 -40.19184 -39.00610 -36.80896 -36.31093 -35.33912 -33.83170 -33.00976 -32.27502 -31.57141 -29.35484 -28.25886 -26.29107 -25.02236 -23.43790 -22.60107 -21.97514 -21.48285 -20.76781 -19.82354 -19.52297 -18.85696 -17.61835 -17.25504 -17.05792 -16.92343 -16.68716 -16.54978 -16.28346 -15.90079 -15.69021 -15.17411 -14.92556 -14.60968 -14.47610 -14.36921 -14.30899 -14.01419 -13.93095 -13.62583 -13.57569 -13.13873 -12.96756 -12.55663 -12.43988 -12.38251 -11.99877 -11.74318 -11.65301 -11.57561 -11.51327 -10.66381 -10.42852 -10.30904 -10.01755 -9.84564 -8.45064 -8.01613 -6.07147 0.36074 0.59162 0.91418 1.31994 1.34921 1.44756 1.77801 1.84108 1.91904 2.21166 2.40970 2.82630 2.85221 3.11468 3.69687 3.82074 3.95334 4.02700 4.11587 4.18069 4.29583 4.38412 4.42554 4.43154 4.44771 4.68754 4.82538 4.98927 5.00653 5.05001 5.12403 5.24500 5.30470 5.36047 5.42796 5.48353 5.70769 5.88466 5.99102 6.40613 6.48767 6.60732 6.78487 7.02031 7.28538 7.35698 7.77751 8.71172 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.001917 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.479981 B =14600.745035 C =15463.473204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.336 6.336 4 C 0.063 3.937 5 C -0.156 4.156 6 C -0.163 4.163 7 C 0.174 3.826 8 N -0.552 5.552 9 N -0.520 5.520 10 C 0.716 3.284 11 O -0.612 6.612 12 N -0.724 5.724 13 C 0.135 3.865 14 C 0.445 3.555 15 O -0.614 6.614 16 N -0.576 5.576 17 C -0.332 4.332 18 H 0.064 0.936 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.958 3.042 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.231 1.231 25 C -0.149 4.149 26 C -0.107 4.107 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.427 0.573 35 H 0.439 0.561 36 H 0.406 0.594 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.392 0.608 40 H 0.281 0.719 41 H 0.146 0.854 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.891 -18.997 -0.007 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.252 6.252 4 C 0.017 3.983 5 C -0.176 4.176 6 C -0.186 4.186 7 C 0.073 3.927 8 N -0.286 5.286 9 N -0.273 5.273 10 C 0.415 3.585 11 O -0.489 6.489 12 N -0.383 5.383 13 C 0.007 3.993 14 C 0.232 3.768 15 O -0.500 6.500 16 N -0.216 5.216 17 C -0.461 4.461 18 H 0.082 0.918 19 C -0.207 4.207 20 N -0.565 5.565 21 Si 0.778 3.222 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.154 1.154 25 C -0.172 4.172 26 C -0.127 4.127 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.270 0.730 35 H 0.286 0.714 36 H 0.244 0.756 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.228 0.772 40 H 0.091 0.909 41 H 0.163 0.837 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.725 -18.864 -0.003 29.534 hybrid contribution 0.858 0.266 0.001 0.898 sum -21.867 -18.598 -0.002 28.706 Atomic orbital electron populations 1.21799 0.91881 1.03973 1.03058 1.22979 0.96640 0.81211 1.01994 1.86050 1.18828 1.30687 1.89586 1.18965 0.82722 0.94362 1.02258 1.21168 0.93025 0.98865 1.04498 1.20440 0.95354 0.95174 1.07596 1.17777 0.80734 0.95007 0.99177 1.43401 0.99044 1.00418 1.85720 1.44108 0.99498 1.03450 1.80271 1.15512 0.81074 0.83464 0.78447 1.90988 1.56574 1.40381 1.61007 1.44695 1.07726 1.06827 1.79048 1.20794 0.81088 0.91920 1.05531 1.20465 0.82931 0.90965 0.82433 1.90521 1.46215 1.56802 1.56484 1.41894 1.06647 1.06879 1.66133 1.19031 0.94011 0.82237 1.50782 0.91765 1.26054 1.00329 0.98646 0.95684 1.69778 1.21564 1.15939 1.49220 0.85455 0.77679 0.79010 0.80042 1.18136 1.19985 1.15442 1.20498 0.91976 0.98162 1.06611 1.20346 0.94273 0.95518 1.02517 0.91990 0.91985 0.88441 0.91388 0.91385 0.83463 0.84834 0.72983 0.71377 0.75570 0.87528 0.87427 0.77168 0.90947 0.83677 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 71.98 0.74 -0.46 16 2 C 0.05 0.51 5.46 71.98 0.39 0.91 16 3 O -0.34 -6.04 10.14 -93.49 -0.95 -6.99 16 4 C 0.06 1.17 6.69 22.49 0.15 1.32 16 5 C -0.16 -2.50 9.03 22.35 0.20 -2.30 16 6 C -0.16 -2.76 9.48 22.39 0.21 -2.54 16 7 C 0.17 3.31 6.72 38.15 0.26 3.57 16 8 N -0.55 -11.12 6.46 -51.27 -0.33 -11.46 16 9 N -0.52 -11.30 6.22 -184.75 -1.15 -12.45 16 10 C 0.72 20.16 8.68 179.05 1.55 21.71 16 11 O -0.61 -20.54 17.18 -3.99 -0.07 -20.61 16 12 N -0.72 -21.16 5.49 -482.30 -2.65 -23.81 16 13 C 0.13 4.19 6.15 85.64 0.53 4.72 16 14 C 0.44 18.61 7.85 87.66 0.69 19.30 16 15 O -0.61 -30.35 15.24 -3.08 -0.05 -30.40 16 16 N -0.58 -25.62 5.09 -306.98 -1.56 -27.19 16 17 C -0.33 -18.44 10.16 84.04 0.85 -17.59 16 18 H 0.06 4.23 7.39 -2.91 -0.02 4.20 16 19 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 20 N -0.93 -53.71 13.96 21.66 0.30 -53.41 16 21 Si 0.96 37.37 27.74 68.60 1.90 39.27 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 25 C -0.15 -2.70 9.89 22.39 0.22 -2.48 16 26 C -0.11 -1.95 9.98 22.35 0.22 -1.73 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.62 7.67 -2.39 -0.02 0.60 16 31 H 0.07 0.62 7.65 -2.39 -0.02 0.60 16 32 H 0.15 1.65 6.29 -2.91 -0.02 1.63 16 33 H 0.13 1.81 6.20 -2.91 -0.02 1.79 16 34 H 0.43 8.66 6.72 -213.31 -1.43 7.23 16 35 H 0.44 7.94 6.71 -213.31 -1.43 6.51 16 36 H 0.41 11.84 5.36 -92.71 -0.50 11.34 16 37 H 0.11 2.98 8.14 -2.38 -0.02 2.96 16 38 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.39 14.58 5.76 -92.70 -0.53 14.05 16 40 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -73.60 358.99 -0.90 -74.51 By element: Atomic # 1 Polarization: 50.85 SS G_CDS: -2.84 Total: 48.01 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 6.49 Total: 24.51 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -5.39 Total: -128.30 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: -1.06 Total: -57.99 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 1.90 Total: 39.27 kcal Total: -73.60 -0.90 -74.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.514 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds