Wall clock time and date at job start Tue Mar 31 2020 13:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47178 * 239.99733 * 3 2 1 5 5 H 1.48495 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46818 * 120.00043 * 3 2 1 7 7 C 1.38813 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99498 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00563 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64362 * 0.02562 * 9 7 2 11 11 C 1.54330 * 107.26840 * 178.90400 * 10 9 7 12 12 C 1.55155 * 102.94292 * 337.81024 * 11 10 9 13 13 O 1.42906 * 111.03447 * 277.41115 * 12 11 10 14 14 C 1.52998 * 111.00688 * 153.57723 * 12 11 10 15 15 N 1.46499 * 109.47155 * 191.34773 * 14 12 11 16 16 C 1.34774 * 119.99880 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99988 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.46824 * 180.02562 * 18 16 15 20 20 C 1.38254 * 119.97292 * 269.71981 * 19 18 16 21 21 C 1.38199 * 120.02397 * 179.77021 * 20 19 18 22 22 C 1.38459 * 119.97332 * 0.51156 * 21 20 19 23 23 F 1.35102 * 120.02182 * 179.76781 * 22 21 20 24 24 C 1.38449 * 119.95003 * 359.74647 * 22 21 20 25 25 C 1.38206 * 119.97814 * 359.97438 * 24 22 21 26 26 C 1.47420 * 125.65209 * 179.97438 * 9 7 2 27 27 H 0.97001 * 119.99700 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.88351 * 298.31999 * 10 9 7 29 29 H 1.08998 * 109.88379 * 59.48789 * 10 9 7 30 30 H 1.08998 * 110.71700 * 96.16950 * 11 10 9 31 31 H 1.08991 * 110.72004 * 219.44241 * 11 10 9 32 32 H 0.96700 * 113.99958 * 173.66878 * 13 12 11 33 33 H 1.09000 * 109.46974 * 311.34938 * 14 12 11 34 34 H 1.08999 * 109.47378 * 71.34625 * 14 12 11 35 35 H 0.96999 * 120.00324 * 359.97438 * 15 14 12 36 36 H 1.08999 * 109.46911 * 300.00236 * 18 16 15 37 37 H 1.08999 * 109.46927 * 60.00139 * 18 16 15 38 38 H 1.08001 * 119.98300 * 0.03119 * 20 19 18 39 39 H 1.07997 * 120.00869 * 180.25827 * 21 20 19 40 40 H 1.08006 * 120.01418 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98831 * 179.97438 * 25 24 22 42 42 H 1.08997 * 110.36858 * 323.00452 * 26 9 7 43 43 H 1.08997 * 110.36396 * 85.21439 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6962 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0005 11 6 -0.4487 -4.0441 -0.0283 12 6 0.8521 -4.6559 -0.6123 13 8 0.8602 -4.5774 -2.0392 14 6 1.0368 -6.1008 -0.1444 15 7 2.3877 -6.5550 -0.4835 16 6 2.7781 -7.8050 -0.1649 17 8 2.0113 -8.5537 0.4029 18 6 4.1676 -8.2725 -0.5142 19 6 4.3494 -9.6956 -0.0533 20 6 4.8368 -9.9541 1.2144 21 6 4.9995 -11.2589 1.6400 22 6 4.6842 -12.3073 0.7924 23 9 4.8473 -13.5832 1.2057 24 6 4.2012 -12.0472 -0.4788 25 6 4.0339 -10.7417 -0.9002 26 6 1.9332 -3.7312 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5551 -2.0849 0.9013 29 1 -0.5571 -2.0517 -0.8841 30 1 -0.6325 -4.4185 0.9787 31 1 -1.2982 -4.2511 -0.6789 32 1 1.6924 -4.8581 -2.4438 33 1 0.8958 -6.1540 0.9351 34 1 0.3042 -6.7391 -0.6384 35 1 3.0011 -5.9561 -0.9373 36 1 4.3079 -8.2198 -1.5939 37 1 4.9005 -7.6339 -0.0210 38 1 5.0865 -9.1361 1.8739 39 1 5.3763 -11.4605 2.6318 40 1 3.9553 -12.8643 -1.1410 41 1 3.6575 -10.5386 -1.8919 42 1 2.8332 -3.7404 -0.6143 43 1 2.1673 -4.0416 1.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754760809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:25 Heat of formation + Delta-G solvation = -79.590387 kcal Electronic energy + Delta-G solvation = -26424.530725 eV Core-core repulsion = 22384.817439 eV Total energy + Delta-G solvation = -4039.713286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.13963 -40.29538 -39.15851 -38.26440 -35.11455 -34.19728 -32.92134 -32.10585 -31.43109 -29.74664 -28.64003 -27.23881 -25.58997 -23.62899 -23.36866 -22.10199 -20.79935 -20.08862 -19.85387 -17.99121 -17.58806 -16.95844 -16.75269 -16.51137 -15.92856 -15.80825 -15.40640 -15.27189 -14.72801 -14.42404 -14.29348 -14.11523 -13.87443 -13.70295 -13.65203 -13.33901 -12.90870 -12.49705 -12.38876 -12.05504 -12.01240 -11.93164 -11.74423 -11.28724 -11.03016 -10.90725 -10.74220 -10.40629 -10.27191 -10.17201 -9.91448 -9.76743 -9.45832 -9.38531 -9.13544 -8.83644 -8.62270 -6.87457 -5.74732 -3.08808 0.82091 0.95928 2.53150 2.97873 3.37583 3.41482 3.42190 3.43523 3.98535 4.29354 4.37923 4.43550 4.46968 4.60235 4.70132 4.81830 4.91484 4.94054 5.10144 5.16177 5.23000 5.33396 5.48191 5.59369 5.62173 5.69365 5.80809 5.82880 5.92192 5.93560 6.13510 6.18105 6.28872 6.30685 6.39920 6.50925 6.56966 6.59129 7.36194 7.49437 7.60721 7.80071 7.95928 8.11281 8.21850 9.17087 9.77307 10.42329 11.36833 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.002203 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.717428 B =12708.447518 C =13167.085101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.128 4.128 12 C 0.102 3.898 13 O -0.537 6.537 14 C 0.105 3.895 15 N -0.727 5.727 16 C 0.513 3.487 17 O -0.534 6.534 18 C -0.104 4.104 19 C -0.074 4.074 20 C -0.076 4.076 21 C -0.152 4.152 22 C 0.094 3.906 23 F -0.143 7.143 24 C -0.153 4.153 25 C -0.076 4.076 26 C 0.117 3.883 27 H 0.254 0.746 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.364 0.636 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.400 0.600 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.037 0.963 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.601 -20.805 -1.762 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.057 3.943 11 C -0.167 4.167 12 C 0.059 3.941 13 O -0.341 6.341 14 C -0.019 4.019 15 N -0.379 5.379 16 C 0.299 3.701 17 O -0.410 6.410 18 C -0.144 4.144 19 C -0.074 4.074 20 C -0.094 4.094 21 C -0.171 4.171 22 C 0.075 3.925 23 F -0.121 7.121 24 C -0.171 4.171 25 C -0.094 4.094 26 C -0.010 4.010 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.210 0.790 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.055 0.945 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.350 -20.914 -1.221 22.553 hybrid contribution 1.311 0.764 -0.187 1.529 sum 9.661 -20.150 -1.409 22.391 Atomic orbital electron populations 1.69950 1.04901 1.25252 1.56541 1.24815 0.95737 0.97724 1.02028 0.86183 0.78445 0.83143 0.77849 1.21161 1.21555 1.21170 1.18964 0.90296 0.82348 1.44447 0.90574 1.44338 1.01646 0.99427 1.87037 1.21147 0.84223 0.87690 1.01268 1.22915 0.94889 0.99657 0.99248 1.22701 0.99254 0.90817 0.81279 1.86637 1.39476 1.89690 1.18309 1.22041 0.83060 0.95444 1.01390 1.46032 1.16198 1.14317 1.61400 1.20468 0.89115 0.81594 0.78955 1.90740 1.54933 1.54208 1.41118 1.20694 0.95572 0.94183 1.03956 1.19348 0.99466 0.94079 0.94525 1.20886 0.97282 0.96103 0.95109 1.21105 1.03512 0.92105 1.00357 1.17730 1.01902 0.78711 0.94140 1.91494 1.93410 1.36572 1.90639 1.21093 1.02644 0.98214 0.95189 1.20858 0.97450 0.91208 0.99904 1.22120 0.94102 0.87470 0.97290 0.93609 0.93764 0.93113 0.90931 0.90929 0.79002 0.90468 0.90804 0.76544 0.87576 0.87473 0.84993 0.84719 0.84755 0.85076 0.94464 0.95615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.31 55.49 0.57 -26.25 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.81 3.39 -170.08 -0.58 -15.39 16 10 C 0.18 4.37 5.37 -3.06 -0.02 4.35 16 11 C -0.13 -2.36 6.16 -24.89 -0.15 -2.51 16 12 C 0.10 1.65 0.95 -88.48 -0.08 1.56 16 13 O -0.54 -8.82 13.18 -35.23 -0.46 -9.28 16 14 C 0.10 1.41 4.97 -4.04 -0.02 1.39 16 15 N -0.73 -7.79 5.19 -60.29 -0.31 -8.10 16 16 C 0.51 5.77 7.82 -10.98 -0.09 5.68 16 17 O -0.53 -8.29 16.03 5.55 0.09 -8.20 16 18 C -0.10 -0.77 5.83 -29.03 -0.17 -0.94 16 19 C -0.07 -0.66 4.37 -104.62 -0.46 -1.12 16 20 C -0.08 -0.68 9.70 -39.59 -0.38 -1.06 16 21 C -0.15 -1.39 10.03 -39.51 -0.40 -1.79 16 22 C 0.09 0.94 7.30 -39.42 -0.29 0.65 16 23 F -0.14 -1.51 17.27 2.25 0.04 -1.48 16 24 C -0.15 -1.37 10.03 -39.52 -0.40 -1.77 16 25 C -0.08 -0.66 9.70 -39.59 -0.38 -1.05 16 26 C 0.12 2.20 5.74 -2.54 -0.01 2.19 16 27 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 29 H 0.05 1.38 7.38 -51.93 -0.38 1.00 16 30 H 0.07 1.20 7.94 -51.93 -0.41 0.79 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.36 4.39 8.57 45.56 0.39 4.78 16 33 H 0.08 1.10 8.00 -51.93 -0.42 0.69 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.40 3.41 7.31 -40.82 -0.30 3.11 16 36 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.11 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.04 0.64 7.80 -51.93 -0.41 0.24 16 43 H 0.03 0.49 8.04 -51.93 -0.42 0.07 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -34.50 363.36 -8.56 -43.06 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.25 Total: 4.59 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.10 Total: -1.16 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.32 Total: -49.74 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.38 Total: -17.48 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.50 -8.56 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.533 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds