Wall clock time and date at job start Tue Mar 31 2020 13:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47178 * 239.99733 * 3 2 1 5 5 H 1.48495 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46818 * 120.00043 * 3 2 1 7 7 C 1.38813 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99498 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00563 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64362 * 0.02562 * 9 7 2 11 11 C 1.54330 * 107.26840 * 178.90400 * 10 9 7 12 12 C 1.55155 * 102.94292 * 337.81024 * 11 10 9 13 13 O 1.42906 * 111.03447 * 277.41115 * 12 11 10 14 14 C 1.52998 * 111.00688 * 153.57723 * 12 11 10 15 15 N 1.46499 * 109.47155 * 191.34773 * 14 12 11 16 16 C 1.34774 * 119.99880 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99988 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.46824 * 180.02562 * 18 16 15 20 20 C 1.38254 * 119.97292 * 269.71981 * 19 18 16 21 21 C 1.38199 * 120.02397 * 179.77021 * 20 19 18 22 22 C 1.38459 * 119.97332 * 0.51156 * 21 20 19 23 23 F 1.35102 * 120.02182 * 179.76781 * 22 21 20 24 24 C 1.38449 * 119.95003 * 359.74647 * 22 21 20 25 25 C 1.38206 * 119.97814 * 359.97438 * 24 22 21 26 26 C 1.47420 * 125.65209 * 179.97438 * 9 7 2 27 27 H 0.97001 * 119.99700 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.88351 * 298.31999 * 10 9 7 29 29 H 1.08998 * 109.88379 * 59.48789 * 10 9 7 30 30 H 1.08998 * 110.71700 * 96.16950 * 11 10 9 31 31 H 1.08991 * 110.72004 * 219.44241 * 11 10 9 32 32 H 0.96700 * 113.99958 * 173.66878 * 13 12 11 33 33 H 1.09000 * 109.46974 * 311.34938 * 14 12 11 34 34 H 1.08999 * 109.47378 * 71.34625 * 14 12 11 35 35 H 0.96999 * 120.00324 * 359.97438 * 15 14 12 36 36 H 1.08999 * 109.46911 * 300.00236 * 18 16 15 37 37 H 1.08999 * 109.46927 * 60.00139 * 18 16 15 38 38 H 1.08001 * 119.98300 * 0.03119 * 20 19 18 39 39 H 1.07997 * 120.00869 * 180.25827 * 21 20 19 40 40 H 1.08006 * 120.01418 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98831 * 179.97438 * 25 24 22 42 42 H 1.08997 * 110.36858 * 323.00452 * 26 9 7 43 43 H 1.08997 * 110.36396 * 85.21439 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6962 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0005 11 6 -0.4487 -4.0441 -0.0283 12 6 0.8521 -4.6559 -0.6123 13 8 0.8602 -4.5774 -2.0392 14 6 1.0368 -6.1008 -0.1444 15 7 2.3877 -6.5550 -0.4835 16 6 2.7781 -7.8050 -0.1649 17 8 2.0113 -8.5537 0.4029 18 6 4.1676 -8.2725 -0.5142 19 6 4.3494 -9.6956 -0.0533 20 6 4.8368 -9.9541 1.2144 21 6 4.9995 -11.2589 1.6400 22 6 4.6842 -12.3073 0.7924 23 9 4.8473 -13.5832 1.2057 24 6 4.2012 -12.0472 -0.4788 25 6 4.0339 -10.7417 -0.9002 26 6 1.9332 -3.7312 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5551 -2.0849 0.9013 29 1 -0.5571 -2.0517 -0.8841 30 1 -0.6325 -4.4185 0.9787 31 1 -1.2982 -4.2511 -0.6789 32 1 1.6924 -4.8581 -2.4438 33 1 0.8958 -6.1540 0.9351 34 1 0.3042 -6.7391 -0.6384 35 1 3.0011 -5.9561 -0.9373 36 1 4.3079 -8.2198 -1.5939 37 1 4.9005 -7.6339 -0.0210 38 1 5.0865 -9.1361 1.8739 39 1 5.3763 -11.4605 2.6318 40 1 3.9553 -12.8643 -1.1410 41 1 3.6575 -10.5386 -1.8919 42 1 2.8332 -3.7404 -0.6143 43 1 2.1673 -4.0416 1.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754760809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:24 Heat of formation + Delta-G solvation = -104.429601 kcal Electronic energy + Delta-G solvation = -26425.607834 eV Core-core repulsion = 22384.817439 eV Total energy + Delta-G solvation = -4040.790395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.89271 -41.19416 -40.20272 -39.32463 -36.71123 -35.26847 -33.99615 -33.55016 -32.06074 -31.40310 -29.95218 -28.28802 -27.16011 -25.16437 -24.00513 -22.94106 -22.18331 -21.37070 -21.16703 -18.94566 -18.69102 -18.45341 -17.53951 -17.42990 -17.00105 -16.69532 -16.57931 -16.34904 -16.11901 -15.78189 -15.62055 -15.06047 -14.96156 -14.73615 -14.47312 -14.34908 -14.21412 -13.88259 -13.63538 -13.21595 -13.08995 -12.93417 -12.73708 -12.71339 -12.64961 -12.32865 -12.09418 -12.02993 -11.89849 -11.77762 -11.69508 -10.98408 -10.82398 -10.66407 -10.10250 -10.02298 -9.52427 -8.87388 -7.83092 -5.18599 0.14097 0.32055 1.47307 1.50650 1.56837 1.70114 2.14934 2.50779 2.71637 3.21965 3.31668 3.36282 3.51029 3.66511 3.68120 3.78698 3.94886 3.99179 4.00699 4.07677 4.27870 4.35586 4.51134 4.61242 4.66820 4.69003 4.70360 4.85080 4.95162 4.99784 5.00396 5.06952 5.12612 5.18548 5.27894 5.39148 5.46248 5.54832 5.64899 5.77590 5.95241 6.20404 6.55500 6.88358 7.10595 7.28686 7.78679 8.42654 9.27484 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.002203 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.717428 B =12708.447518 C =13167.085101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.088 0.912 9 N -0.622 5.622 10 C 0.190 3.810 11 C -0.123 4.123 12 C 0.123 3.877 13 O -0.554 6.554 14 C 0.121 3.879 15 N -0.718 5.718 16 C 0.514 3.486 17 O -0.580 6.580 18 C -0.096 4.096 19 C -0.083 4.083 20 C -0.086 4.086 21 C -0.161 4.161 22 C 0.071 3.929 23 F -0.152 7.152 24 C -0.160 4.160 25 C -0.083 4.083 26 C 0.113 3.887 27 H 0.245 0.755 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.385 0.615 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.414 0.586 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.060 0.940 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.688 -21.625 -2.516 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.369 4.369 8 H 0.106 0.894 9 N -0.348 5.348 10 C 0.064 3.936 11 C -0.162 4.162 12 C 0.081 3.919 13 O -0.361 6.361 14 C -0.004 4.004 15 N -0.371 5.371 16 C 0.302 3.698 17 O -0.459 6.459 18 C -0.135 4.135 19 C -0.084 4.084 20 C -0.103 4.103 21 C -0.180 4.180 22 C 0.052 3.948 23 F -0.131 7.131 24 C -0.179 4.179 25 C -0.101 4.101 26 C -0.012 4.012 27 H 0.054 0.946 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.251 0.749 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.079 0.921 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.505 -21.763 -1.998 24.248 hybrid contribution 0.685 0.976 0.037 1.192 sum 11.189 -20.788 -1.960 23.689 Atomic orbital electron populations 1.70197 1.06461 1.25255 1.58334 1.25701 0.96586 1.01261 1.02804 0.85132 0.77055 0.78700 0.78313 1.20085 1.22537 1.20160 1.19446 0.91112 0.83550 1.42794 0.89396 1.44637 1.02115 1.01115 1.86902 1.20824 0.84213 0.91087 0.97444 1.22799 0.96608 0.95710 1.01048 1.22365 0.96539 0.91789 0.81237 1.86605 1.41277 1.90022 1.18214 1.21665 0.84760 0.93140 1.00865 1.45892 1.15262 1.14656 1.61273 1.21103 0.90115 0.80874 0.77674 1.90734 1.56570 1.55376 1.43228 1.20758 0.93239 0.93297 1.06199 1.19637 0.99095 0.95109 0.94556 1.21166 0.97230 0.96348 0.95603 1.21331 1.03481 0.92276 1.00903 1.18024 1.03147 0.78606 0.95030 1.91464 1.93629 1.37178 1.90807 1.21342 1.02332 0.99122 0.95081 1.21166 0.97101 0.90976 1.00862 1.22359 0.95481 0.85104 0.98300 0.94553 0.97469 0.97492 0.88965 0.90171 0.76590 0.91012 0.90893 0.74925 0.84423 0.84888 0.83499 0.83635 0.83448 0.83153 0.92142 0.94788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.67 10.31 21.65 0.22 -57.44 16 2 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 3 Si 0.98 45.02 29.55 68.60 2.03 47.05 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.24 -13.01 10.28 84.03 0.86 -12.14 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -30.62 3.39 -692.01 -2.35 -32.97 16 10 C 0.19 9.38 5.37 86.73 0.47 9.85 16 11 C -0.12 -4.44 6.16 31.78 0.20 -4.24 16 12 C 0.12 3.70 0.95 -9.41 -0.01 3.69 16 13 O -0.55 -16.80 13.18 -148.98 -1.96 -18.76 16 14 C 0.12 2.91 4.97 86.38 0.43 3.34 16 15 N -0.72 -12.71 5.19 -463.06 -2.40 -15.11 16 16 C 0.51 9.85 7.82 87.66 0.69 10.54 16 17 O -0.58 -16.76 16.03 -3.04 -0.05 -16.80 16 18 C -0.10 -1.01 5.83 29.10 0.17 -0.84 16 19 C -0.08 -1.27 4.37 -19.86 -0.09 -1.36 16 20 C -0.09 -1.36 9.70 22.26 0.22 -1.15 16 21 C -0.16 -2.81 10.03 22.31 0.22 -2.58 16 22 C 0.07 1.38 7.30 22.37 0.16 1.54 16 23 F -0.15 -3.23 17.27 44.97 0.78 -2.45 16 24 C -0.16 -2.69 10.03 22.31 0.22 -2.47 16 25 C -0.08 -1.26 9.70 22.26 0.22 -1.04 16 26 C 0.11 3.98 5.74 86.85 0.50 4.48 16 27 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.01 0.40 7.51 -2.39 -0.02 0.38 16 29 H 0.01 0.39 7.38 -2.39 -0.02 0.37 16 30 H 0.09 2.95 7.94 -2.39 -0.02 2.93 16 31 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.39 7.91 8.57 -74.06 -0.63 7.27 16 33 H 0.07 1.86 8.00 -2.39 -0.02 1.85 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 5.16 7.31 -92.71 -0.68 4.48 16 36 H 0.14 0.63 8.08 -2.39 -0.02 0.61 16 37 H 0.13 0.78 8.08 -2.39 -0.02 0.76 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 40 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.06 1.86 7.80 -2.39 -0.02 1.84 16 43 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 Total: -1.00 -77.60 363.36 0.72 -76.89 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.27 Total: 15.52 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.72 Total: 4.09 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.53 Total: -105.53 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -2.01 Total: -35.57 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -77.60 0.72 -76.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.543 kcal (2) G-P(sol) polarization free energy of solvation -77.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds