Wall clock time and date at job start Tue Mar 31 2020 13:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99804 * 2 1 4 4 H 1.48491 * 109.47035 * 264.99087 * 3 2 1 5 5 H 1.48501 * 109.47201 * 24.99123 * 3 2 1 6 6 H 1.48504 * 109.46702 * 144.99074 * 3 2 1 7 7 C 1.38806 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00668 * 187.32082 * 7 2 1 9 9 N 1.36942 * 119.99977 * 7.32181 * 7 2 1 10 10 C 1.47427 * 125.64885 * 185.51062 * 9 7 2 11 11 C 1.55129 * 104.71812 * 155.81713 * 10 9 7 12 12 C 1.55159 * 101.49043 * 37.29735 * 11 10 9 13 13 O 1.42897 * 110.71951 * 82.69164 * 12 11 10 14 14 C 1.52998 * 110.72013 * 205.96907 * 12 11 10 15 15 N 1.46497 * 109.47063 * 174.97237 * 14 12 11 16 16 C 1.34781 * 120.00082 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99899 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00127 * 180.02562 * 16 15 14 19 19 C 1.50695 * 109.47061 * 179.97438 * 18 16 15 20 20 C 1.38248 * 119.97651 * 269.72343 * 19 18 16 21 21 C 1.38201 * 120.02555 * 179.72358 * 20 19 18 22 22 C 1.38458 * 119.97355 * 0.57863 * 21 20 19 23 23 F 1.35102 * 120.02588 * 179.68077 * 22 21 20 24 24 C 1.38456 * 119.94942 * 359.69237 * 22 21 20 25 25 C 1.38198 * 119.97500 * 0.02562 * 24 22 21 26 26 C 1.47024 * 125.64744 * 5.81515 * 9 7 2 27 27 H 0.97000 * 119.99633 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.36369 * 274.74211 * 10 9 7 29 29 H 1.08994 * 110.36800 * 37.06894 * 10 9 7 30 30 H 1.08998 * 111.19642 * 279.18646 * 11 10 9 31 31 H 1.09008 * 110.93670 * 155.28724 * 11 10 9 32 32 H 0.96710 * 113.99505 * 185.02321 * 13 12 11 33 33 H 1.08998 * 109.47251 * 294.97534 * 14 12 11 34 34 H 1.09002 * 109.47346 * 54.97350 * 14 12 11 35 35 H 0.97000 * 120.00128 * 359.97438 * 15 14 12 36 36 H 1.08999 * 109.46940 * 299.99655 * 18 16 15 37 37 H 1.09002 * 109.47061 * 59.99748 * 18 16 15 38 38 H 1.08002 * 119.98604 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.01165 * 180.29631 * 21 20 19 40 40 H 1.08002 * 120.01337 * 180.02562 * 24 22 21 41 41 H 1.08001 * 119.98740 * 180.02562 * 25 24 22 42 42 H 1.08998 * 109.88611 * 300.44446 * 26 9 7 43 43 H 1.09003 * 109.88062 * 61.60582 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6035 1.9853 -1.3946 5 1 1.3987 2.6810 0.5915 6 1 3.4908 1.4731 0.8033 7 6 2.0103 -1.2021 0.0005 8 1 3.0837 -1.2059 0.1197 9 7 1.3340 -2.3833 -0.1501 10 6 1.9255 -3.7303 -0.0542 11 6 0.7396 -4.6554 0.3254 12 6 -0.4174 -4.0275 -0.4959 13 8 -0.3945 -4.4997 -1.8444 14 6 -1.7683 -4.3217 0.1595 15 7 -2.8275 -3.6184 -0.5681 16 6 -4.1096 -3.7315 -0.1679 17 8 -4.3863 -4.4159 0.7944 18 6 -5.1993 -3.0084 -0.9167 19 6 -6.5299 -3.2992 -0.2719 20 6 -7.2815 -4.3794 -0.6956 21 6 -8.4993 -4.6503 -0.1010 22 6 -8.9721 -3.8324 0.9111 23 9 -10.1655 -4.0925 1.4886 24 6 -8.2212 -2.7475 1.3308 25 6 -7.0010 -2.4819 0.7388 26 6 -0.1009 -2.5181 -0.4404 27 1 -0.4849 0.8401 0.0004 28 1 2.3496 -4.0275 -1.0134 29 1 2.6892 -3.7548 0.7231 30 1 0.5301 -4.6092 1.3940 31 1 0.9298 -5.6816 0.0107 32 1 -1.0491 -4.0799 -2.4193 33 1 -1.9593 -5.3945 0.1322 34 1 -1.7515 -3.9819 1.1950 35 1 -2.6063 -3.0713 -1.3379 36 1 -5.0086 -1.9356 -0.8894 37 1 -5.2157 -3.3483 -1.9522 38 1 -6.9149 -5.0142 -1.4887 39 1 -9.0840 -5.4971 -0.4289 40 1 -8.5888 -2.1091 2.1205 41 1 -6.4149 -1.6360 1.0663 42 1 -0.6850 -2.0456 0.3494 43 1 -0.3299 -2.0558 -1.4006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754760810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:28 Heat of formation + Delta-G solvation = -81.806331 kcal Electronic energy + Delta-G solvation = -26769.836453 eV Core-core repulsion = 22730.027077 eV Total energy + Delta-G solvation = -4039.809376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.03296 -40.11656 -39.04768 -38.15463 -35.10644 -34.00505 -32.75830 -32.23446 -31.30238 -29.69773 -28.28696 -27.22255 -25.60204 -23.63719 -23.23674 -21.95587 -20.71221 -19.97810 -19.82770 -17.88056 -17.55344 -16.80505 -16.61787 -16.46591 -15.94861 -15.71283 -15.22492 -15.12660 -14.61709 -14.22014 -14.13575 -13.96871 -13.74363 -13.65943 -13.55603 -13.12827 -12.90619 -12.33633 -12.31951 -12.23564 -11.89580 -11.81960 -11.56371 -11.22382 -11.15368 -10.87714 -10.75981 -10.49398 -10.30199 -10.07615 -9.86431 -9.74925 -9.33743 -9.25770 -8.90397 -8.72804 -8.70413 -6.90863 -5.79453 -3.14245 0.95298 1.08740 2.74238 3.16589 3.35354 3.40876 3.41880 3.58299 4.10287 4.41842 4.46073 4.51808 4.54208 4.72191 4.86598 4.98090 5.05485 5.08351 5.31645 5.34319 5.38802 5.41916 5.45303 5.59634 5.73053 5.82491 5.88214 5.94896 5.98882 6.05500 6.14653 6.26376 6.33077 6.40498 6.53858 6.61110 6.71963 6.86050 7.18822 7.41881 7.58695 7.65641 8.02584 8.16104 8.32631 9.11919 9.73385 10.39047 11.30656 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002757 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.995351 B =10152.440449 C =11348.971096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.136 3.864 11 C -0.115 4.115 12 C 0.086 3.914 13 O -0.551 6.551 14 C 0.111 3.889 15 N -0.721 5.721 16 C 0.515 3.485 17 O -0.538 6.538 18 C -0.105 4.105 19 C -0.070 4.070 20 C -0.077 4.077 21 C -0.153 4.153 22 C 0.092 3.908 23 F -0.144 7.144 24 C -0.152 4.152 25 C -0.075 4.075 26 C 0.157 3.843 27 H 0.252 0.748 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.367 0.633 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.402 0.598 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.074 0.926 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.329 -7.510 -3.218 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.010 3.990 11 C -0.154 4.154 12 C 0.045 3.955 13 O -0.356 6.356 14 C -0.013 4.013 15 N -0.373 5.373 16 C 0.301 3.699 17 O -0.415 6.415 18 C -0.145 4.145 19 C -0.071 4.071 20 C -0.095 4.095 21 C -0.172 4.172 22 C 0.073 3.927 23 F -0.122 7.122 24 C -0.171 4.171 25 C -0.093 4.093 26 C 0.032 3.968 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.213 0.787 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.236 0.764 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.092 0.908 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.108 -8.162 -2.226 16.450 hybrid contribution -0.095 1.521 -0.477 1.597 sum -14.204 -6.640 -2.704 15.911 Atomic orbital electron populations 1.69896 1.04902 1.25046 1.57289 1.24782 0.95743 0.97720 1.02313 0.86114 0.78623 0.83253 0.77657 1.21598 1.21705 1.20709 1.19080 0.91016 0.82574 1.42686 0.90337 1.44377 1.04644 1.00260 1.83633 1.21622 0.93997 0.85623 0.97797 1.22748 0.94962 0.98995 0.98657 1.22917 0.92651 0.97810 0.82148 1.86523 1.61476 1.67256 1.20371 1.21932 0.85921 0.96638 0.96823 1.45910 1.06485 1.51071 1.33837 1.20404 0.83269 0.81530 0.84697 1.90722 1.82770 1.40399 1.27612 1.20695 0.90545 1.02937 1.00302 1.19370 0.94947 0.95784 0.97010 1.20850 0.93233 0.96097 0.99360 1.21069 0.97990 1.00693 0.97476 1.17723 0.82523 0.96987 0.95447 1.91486 1.43498 1.93794 1.83445 1.21104 0.95868 0.97877 1.02210 1.20926 0.94603 0.99341 0.94422 1.21877 0.86853 0.87473 1.00627 0.93801 0.95673 0.93981 0.90163 0.90987 0.78661 0.91368 0.90479 0.76387 0.87270 0.87704 0.85135 0.84853 0.84753 0.84860 0.90830 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.52 10.46 55.49 0.58 -24.94 16 2 C -0.01 -0.26 5.45 -17.43 -0.09 -0.36 16 3 Si 0.91 21.49 29.56 -169.99 -5.02 16.46 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.11 10.26 -15.06 -0.15 -6.26 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.60 -14.87 3.39 -169.93 -0.58 -15.45 16 10 C 0.14 2.78 7.23 -2.41 -0.02 2.76 16 11 C -0.11 -1.98 6.27 -24.46 -0.15 -2.13 16 12 C 0.09 1.48 0.91 -88.79 -0.08 1.40 16 13 O -0.55 -8.96 13.09 -35.23 -0.46 -9.42 16 14 C 0.11 1.73 4.74 -4.04 -0.02 1.71 16 15 N -0.72 -9.66 5.18 -60.29 -0.31 -9.97 16 16 C 0.52 7.03 7.82 -10.98 -0.09 6.95 16 17 O -0.54 -9.44 16.03 5.55 0.09 -9.35 16 18 C -0.10 -1.02 5.83 -29.04 -0.17 -1.19 16 19 C -0.07 -0.76 4.37 -104.62 -0.46 -1.22 16 20 C -0.08 -0.78 9.70 -39.59 -0.38 -1.16 16 21 C -0.15 -1.57 10.03 -39.51 -0.40 -1.97 16 22 C 0.09 1.04 7.30 -39.42 -0.29 0.75 16 23 F -0.14 -1.68 17.27 2.25 0.04 -1.65 16 24 C -0.15 -1.63 10.03 -39.52 -0.40 -2.03 16 25 C -0.07 -0.82 9.70 -39.59 -0.38 -1.20 16 26 C 0.16 3.45 4.23 -3.06 -0.01 3.44 16 27 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 31 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 32 H 0.37 4.66 8.14 45.56 0.37 5.03 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 35 H 0.40 4.70 7.40 -40.82 -0.30 4.40 16 36 H 0.11 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.07 1.82 6.56 -51.93 -0.34 1.48 16 43 H 0.03 0.72 7.89 -51.93 -0.41 0.32 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -33.04 363.44 -8.57 -41.62 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.29 Total: 7.72 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.09 Total: -0.51 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.31 Total: -50.36 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.37 Total: -18.77 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.04 -8.57 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.189 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds