Wall clock time and date at job start Tue Mar 31 2020 13:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99804 * 2 1 4 4 H 1.48491 * 109.47035 * 264.99087 * 3 2 1 5 5 H 1.48501 * 109.47201 * 24.99123 * 3 2 1 6 6 H 1.48504 * 109.46702 * 144.99074 * 3 2 1 7 7 C 1.38806 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00668 * 187.32082 * 7 2 1 9 9 N 1.36942 * 119.99977 * 7.32181 * 7 2 1 10 10 C 1.47427 * 125.64885 * 185.51062 * 9 7 2 11 11 C 1.55129 * 104.71812 * 155.81713 * 10 9 7 12 12 C 1.55159 * 101.49043 * 37.29735 * 11 10 9 13 13 O 1.42897 * 110.71951 * 82.69164 * 12 11 10 14 14 C 1.52998 * 110.72013 * 205.96907 * 12 11 10 15 15 N 1.46497 * 109.47063 * 174.97237 * 14 12 11 16 16 C 1.34781 * 120.00082 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99899 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00127 * 180.02562 * 16 15 14 19 19 C 1.50695 * 109.47061 * 179.97438 * 18 16 15 20 20 C 1.38248 * 119.97651 * 269.72343 * 19 18 16 21 21 C 1.38201 * 120.02555 * 179.72358 * 20 19 18 22 22 C 1.38458 * 119.97355 * 0.57863 * 21 20 19 23 23 F 1.35102 * 120.02588 * 179.68077 * 22 21 20 24 24 C 1.38456 * 119.94942 * 359.69237 * 22 21 20 25 25 C 1.38198 * 119.97500 * 0.02562 * 24 22 21 26 26 C 1.47024 * 125.64744 * 5.81515 * 9 7 2 27 27 H 0.97000 * 119.99633 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.36369 * 274.74211 * 10 9 7 29 29 H 1.08994 * 110.36800 * 37.06894 * 10 9 7 30 30 H 1.08998 * 111.19642 * 279.18646 * 11 10 9 31 31 H 1.09008 * 110.93670 * 155.28724 * 11 10 9 32 32 H 0.96710 * 113.99505 * 185.02321 * 13 12 11 33 33 H 1.08998 * 109.47251 * 294.97534 * 14 12 11 34 34 H 1.09002 * 109.47346 * 54.97350 * 14 12 11 35 35 H 0.97000 * 120.00128 * 359.97438 * 15 14 12 36 36 H 1.08999 * 109.46940 * 299.99655 * 18 16 15 37 37 H 1.09002 * 109.47061 * 59.99748 * 18 16 15 38 38 H 1.08002 * 119.98604 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.01165 * 180.29631 * 21 20 19 40 40 H 1.08002 * 120.01337 * 180.02562 * 24 22 21 41 41 H 1.08001 * 119.98740 * 180.02562 * 25 24 22 42 42 H 1.08998 * 109.88611 * 300.44446 * 26 9 7 43 43 H 1.09003 * 109.88062 * 61.60582 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6035 1.9853 -1.3946 5 1 1.3987 2.6810 0.5915 6 1 3.4908 1.4731 0.8033 7 6 2.0103 -1.2021 0.0005 8 1 3.0837 -1.2059 0.1197 9 7 1.3340 -2.3833 -0.1501 10 6 1.9255 -3.7303 -0.0542 11 6 0.7396 -4.6554 0.3254 12 6 -0.4174 -4.0275 -0.4959 13 8 -0.3945 -4.4997 -1.8444 14 6 -1.7683 -4.3217 0.1595 15 7 -2.8275 -3.6184 -0.5681 16 6 -4.1096 -3.7315 -0.1679 17 8 -4.3863 -4.4159 0.7944 18 6 -5.1993 -3.0084 -0.9167 19 6 -6.5299 -3.2992 -0.2719 20 6 -7.2815 -4.3794 -0.6956 21 6 -8.4993 -4.6503 -0.1010 22 6 -8.9721 -3.8324 0.9111 23 9 -10.1655 -4.0925 1.4886 24 6 -8.2212 -2.7475 1.3308 25 6 -7.0010 -2.4819 0.7388 26 6 -0.1009 -2.5181 -0.4404 27 1 -0.4849 0.8401 0.0004 28 1 2.3496 -4.0275 -1.0134 29 1 2.6892 -3.7548 0.7231 30 1 0.5301 -4.6092 1.3940 31 1 0.9298 -5.6816 0.0107 32 1 -1.0491 -4.0799 -2.4193 33 1 -1.9593 -5.3945 0.1322 34 1 -1.7515 -3.9819 1.1950 35 1 -2.6063 -3.0713 -1.3379 36 1 -5.0086 -1.9356 -0.8894 37 1 -5.2157 -3.3483 -1.9522 38 1 -6.9149 -5.0142 -1.4887 39 1 -9.0840 -5.4971 -0.4289 40 1 -8.5888 -2.1091 2.1205 41 1 -6.4149 -1.6360 1.0663 42 1 -0.6850 -2.0456 0.3494 43 1 -0.3299 -2.0558 -1.4006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754760810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:27 Heat of formation + Delta-G solvation = -104.564474 kcal Electronic energy + Delta-G solvation = -26770.823320 eV Core-core repulsion = 22730.027077 eV Total energy + Delta-G solvation = -4040.796243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.89905 -41.19369 -40.20479 -39.32629 -36.70419 -35.22184 -34.10474 -33.58420 -32.07597 -31.27363 -29.74319 -28.41984 -27.20195 -25.19853 -24.01639 -22.93155 -22.17917 -21.33276 -21.16013 -19.09347 -18.67204 -18.38558 -17.69800 -17.44419 -17.17768 -16.59226 -16.39150 -16.32973 -16.05192 -15.77642 -15.54876 -15.03187 -14.84461 -14.78736 -14.46610 -14.39175 -14.29141 -13.94749 -13.66156 -13.21441 -13.10043 -13.04227 -12.75863 -12.68514 -12.65709 -12.42245 -12.13556 -11.91688 -11.91216 -11.79492 -11.65899 -10.94060 -10.82426 -10.73616 -10.08755 -10.03613 -9.53761 -8.87187 -7.83066 -5.19956 0.12833 0.30587 1.48036 1.48836 1.56592 1.68562 2.16908 2.50018 2.70676 3.21337 3.29748 3.32505 3.49607 3.66570 3.77150 3.87947 3.93779 3.96439 3.98303 4.07168 4.25514 4.34121 4.49657 4.56888 4.64331 4.66616 4.76202 4.83019 4.95789 4.98606 5.02707 5.05781 5.16539 5.26282 5.33315 5.35775 5.45131 5.52611 5.54372 5.69660 5.93735 6.20972 6.53469 6.81005 7.11053 7.26542 7.77148 8.41893 9.24288 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002757 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.995351 B =10152.440449 C =11348.971096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.060 4.060 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.627 5.627 10 C 0.129 3.871 11 C -0.109 4.109 12 C 0.107 3.893 13 O -0.553 6.553 14 C 0.122 3.878 15 N -0.716 5.716 16 C 0.514 3.486 17 O -0.580 6.580 18 C -0.097 4.097 19 C -0.082 4.082 20 C -0.081 4.081 21 C -0.157 4.157 22 C 0.073 3.927 23 F -0.150 7.150 24 C -0.160 4.160 25 C -0.089 4.089 26 C 0.168 3.832 27 H 0.248 0.752 28 H 0.025 0.975 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.383 0.617 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.042 0.958 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.394 -8.213 -4.305 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.253 4.253 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.353 5.353 10 C 0.004 3.996 11 C -0.147 4.147 12 C 0.065 3.935 13 O -0.360 6.360 14 C -0.003 4.003 15 N -0.369 5.369 16 C 0.302 3.698 17 O -0.459 6.459 18 C -0.136 4.136 19 C -0.083 4.083 20 C -0.099 4.099 21 C -0.175 4.175 22 C 0.054 3.946 23 F -0.129 7.129 24 C -0.179 4.179 25 C -0.107 4.107 26 C 0.043 3.957 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.232 0.768 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.141 0.859 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.060 0.940 43 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -14.165 -8.872 -3.344 17.046 hybrid contribution -0.042 1.725 -0.158 1.732 sum -14.207 -7.148 -3.502 16.285 Atomic orbital electron populations 1.70083 1.05831 1.25235 1.57863 1.25532 0.96686 1.00540 1.02587 0.85165 0.77606 0.79443 0.77521 1.21355 1.22007 1.19930 1.19396 0.91411 0.84002 1.42539 0.90448 1.44711 1.05871 1.01140 1.83596 1.21776 0.95379 0.84551 0.97892 1.22742 0.93243 0.99584 0.99136 1.22544 0.93613 0.94313 0.83045 1.86494 1.62467 1.67093 1.19985 1.21669 0.85589 0.97264 0.95740 1.45870 1.06241 1.50906 1.33856 1.21066 0.83678 0.80839 0.84178 1.90706 1.83335 1.42373 1.29530 1.20737 0.88281 1.03227 1.01339 1.19602 0.95489 0.96067 0.97111 1.21161 0.92972 0.96007 0.99736 1.21351 0.98289 1.00951 0.96931 1.17978 0.82622 0.97741 0.96247 1.91465 1.43874 1.93890 1.83662 1.21297 0.95959 0.98080 1.02573 1.21131 0.94855 0.99930 0.94814 1.21663 0.85360 0.90591 0.98125 0.94296 0.95744 0.93612 0.89570 0.88259 0.76757 0.90348 0.92499 0.75326 0.85929 0.84212 0.82854 0.82990 0.83681 0.84301 0.93989 0.97328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.71 10.46 21.65 0.23 -52.48 16 2 C -0.06 -3.26 5.45 84.86 0.46 -2.80 16 3 Si 0.97 44.28 29.56 68.60 2.03 46.31 16 4 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.24 -13.34 10.26 84.03 0.86 -12.48 16 8 H 0.08 4.10 7.84 -2.91 -0.02 4.08 16 9 N -0.63 -31.02 3.39 -691.54 -2.35 -33.37 16 10 C 0.13 5.18 7.23 86.93 0.63 5.81 16 11 C -0.11 -3.55 6.27 32.06 0.20 -3.34 16 12 C 0.11 3.53 0.91 -9.61 -0.01 3.52 16 13 O -0.55 -16.70 13.09 -148.98 -1.95 -18.65 16 14 C 0.12 3.66 4.74 86.38 0.41 4.07 16 15 N -0.72 -18.22 5.18 -463.06 -2.40 -20.62 16 16 C 0.51 13.31 7.82 87.66 0.69 13.99 16 17 O -0.58 -19.91 16.03 -3.06 -0.05 -19.96 16 18 C -0.10 -1.66 5.83 29.10 0.17 -1.49 16 19 C -0.08 -1.65 4.37 -19.86 -0.09 -1.74 16 20 C -0.08 -1.47 9.70 22.26 0.22 -1.26 16 21 C -0.16 -2.99 10.03 22.31 0.22 -2.77 16 22 C 0.07 1.62 7.30 22.37 0.16 1.78 16 23 F -0.15 -3.49 17.27 44.97 0.78 -2.71 16 24 C -0.16 -3.41 10.03 22.31 0.22 -3.19 16 25 C -0.09 -1.90 9.70 22.26 0.22 -1.68 16 26 C 0.17 7.42 4.23 86.73 0.37 7.79 16 27 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 2.72 8.04 -2.39 -0.02 2.70 16 31 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.38 8.82 8.14 -74.05 -0.60 8.22 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 35 H 0.41 8.98 7.40 -92.71 -0.69 8.29 16 36 H 0.12 1.81 8.09 -2.39 -0.02 1.79 16 37 H 0.14 1.42 8.08 -2.39 -0.02 1.40 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.04 2.12 6.56 -2.39 -0.02 2.11 16 43 H 0.01 0.41 7.89 -2.39 -0.02 0.39 16 Total: -1.00 -71.49 363.44 0.77 -70.71 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.24 Total: 24.56 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.73 Total: 6.21 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.52 Total: -106.46 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -2.00 Total: -38.61 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.49 0.77 -70.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.851 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds