Wall clock time and date at job start Tue Mar 31 2020 13:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47048 * 239.99953 * 3 2 1 5 5 H 1.48498 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47104 * 119.99927 * 3 2 1 7 7 C 1.38811 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99692 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00223 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99812 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47140 * 325.00698 * 10 9 7 12 12 C 1.53006 * 109.46704 * 85.00533 * 10 9 7 13 13 O 1.42898 * 109.47038 * 64.99884 * 12 10 9 14 14 C 1.52995 * 109.46984 * 205.00106 * 10 9 7 15 15 N 1.46510 * 109.47051 * 55.00413 * 14 10 9 16 16 C 1.34773 * 119.99937 * 179.97438 * 15 14 10 17 17 O 1.21283 * 120.00060 * 355.15960 * 16 15 14 18 18 C 1.50703 * 119.99900 * 175.15799 * 16 15 14 19 19 C 1.50698 * 115.54731 * 280.30931 * 18 16 15 20 20 C 1.38227 * 120.01141 * 114.45755 * 19 18 16 21 21 C 1.38224 * 120.02384 * 179.72136 * 20 19 18 22 22 C 1.38262 * 120.05218 * 0.55276 * 21 20 19 23 23 C 1.38175 * 120.02575 * 359.72006 * 22 21 20 24 24 C 1.38437 * 120.01701 * 294.73147 * 19 18 16 25 25 F 1.35093 * 120.02529 * 359.97438 * 24 19 18 26 26 C 1.52994 * 117.49846 * 134.60394 * 18 16 15 27 27 C 1.52997 * 117.49815 * 65.97883 * 18 16 15 28 28 H 0.96997 * 119.99953 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00237 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.46727 * 184.99696 * 12 10 9 31 31 H 1.09000 * 109.47316 * 304.99855 * 12 10 9 32 32 H 0.96700 * 113.99876 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47588 * 295.00814 * 14 10 9 34 34 H 1.09000 * 109.47100 * 175.00374 * 14 10 9 35 35 H 0.96999 * 119.99857 * 0.02562 * 15 14 10 36 36 H 1.08000 * 119.98661 * 359.97438 * 20 19 18 37 37 H 1.07996 * 119.97281 * 180.25438 * 21 20 19 38 38 H 1.08005 * 119.98749 * 179.74666 * 22 21 20 39 39 H 1.08002 * 120.01078 * 180.02562 * 23 22 21 40 40 H 1.09000 * 117.50252 * 359.97438 * 26 18 16 41 41 H 1.09006 * 117.50033 * 145.02381 * 26 18 16 42 42 H 1.09005 * 117.50082 * 214.97631 * 27 18 16 43 43 H 1.08997 * 117.50120 * 0.02562 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9683 -3.5503 -0.5916 12 6 2.4229 -4.0363 1.4350 13 8 1.2292 -4.2896 2.1785 14 6 1.1804 -4.7519 -0.6111 15 7 0.7329 -4.3346 -1.9423 16 6 -0.0566 -5.1465 -2.6730 17 8 -0.3249 -6.2575 -2.2672 18 6 -0.6062 -4.6737 -3.9942 19 6 -1.8083 -3.7687 -3.9117 20 6 -1.7145 -2.4547 -4.3306 21 6 -2.8185 -1.6260 -4.2604 22 6 -4.0146 -2.1067 -3.7605 23 6 -4.1091 -3.4182 -3.3358 24 6 -3.0054 -4.2511 -3.4109 25 9 -3.0968 -5.5336 -2.9965 26 6 -0.5288 -5.6400 -5.1779 27 6 0.3929 -4.4200 -5.1248 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 3.0434 -4.9323 1.4276 31 1 2.9729 -3.2173 1.8986 32 1 1.3850 -4.5367 3.1003 33 1 0.3133 -4.9200 0.0275 34 1 1.7553 -5.6743 -0.6936 35 1 1.0054 -3.4743 -2.2980 36 1 -0.7794 -2.0768 -4.7168 37 1 -2.7454 -0.6007 -4.5918 38 1 -4.8754 -1.4571 -3.7023 39 1 -5.0437 -3.7936 -2.9457 40 1 -0.0801 -6.6175 -5.0012 41 1 -1.3476 -5.6213 -5.8973 42 1 0.1806 -3.5986 -5.8092 43 1 1.4477 -4.5953 -4.9131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755644223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:41 Heat of formation + Delta-G solvation = -64.648535 kcal Electronic energy + Delta-G solvation = -27926.084030 eV Core-core repulsion = 23887.018672 eV Total energy + Delta-G solvation = -4039.065358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.58333 -40.12465 -38.59251 -37.20928 -36.21787 -34.83541 -33.40293 -31.30880 -30.76764 -30.27148 -28.37506 -25.87889 -24.18595 -23.58850 -22.97449 -21.88422 -21.80312 -20.07003 -19.26160 -17.79512 -17.45614 -16.84783 -16.58769 -16.09446 -15.72839 -15.59889 -15.29282 -14.88743 -14.83562 -14.21904 -14.04023 -13.95269 -13.62194 -13.36292 -13.07307 -12.97336 -12.76032 -12.63736 -12.21250 -11.95521 -11.76485 -11.61119 -11.40968 -11.17948 -10.88551 -10.84958 -10.67731 -10.55207 -10.37373 -10.12838 -9.78273 -9.54712 -9.35441 -8.97880 -8.80982 -8.51849 -8.46549 -7.03000 -5.80378 -3.10930 1.22835 1.32746 2.93607 3.37701 3.42929 3.44222 3.44451 3.58092 3.86291 4.38195 4.51987 4.52515 4.74573 4.88817 4.91286 4.94686 5.09450 5.15132 5.39117 5.41960 5.43013 5.53228 5.55956 5.57946 5.68836 5.80478 5.90993 5.95765 6.03971 6.04083 6.06346 6.17694 6.23193 6.38007 6.41026 6.51065 6.52078 6.76020 6.96477 6.99241 7.61671 8.01883 8.21767 8.35812 8.65063 9.48069 10.03730 10.40659 11.40632 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.005029 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.440089 B = 5566.903760 C = 6926.850360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.065 0.935 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.119 3.881 15 N -0.705 5.705 16 C 0.549 3.451 17 O -0.539 6.539 18 C -0.115 4.115 19 C -0.081 4.081 20 C -0.072 4.072 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.158 4.158 24 C 0.113 3.887 25 F -0.129 7.129 26 C -0.135 4.135 27 C -0.156 4.156 28 H 0.256 0.744 29 H 0.389 0.611 30 H 0.026 0.974 31 H 0.048 0.952 32 H 0.363 0.637 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -6.898 -9.899 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.353 5.353 10 C 0.055 3.945 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.006 4.006 15 N -0.356 5.356 16 C 0.334 3.666 17 O -0.416 6.416 18 C -0.118 4.118 19 C -0.082 4.082 20 C -0.090 4.090 21 C -0.143 4.143 22 C -0.106 4.106 23 C -0.177 4.177 24 C 0.094 3.906 25 F -0.107 7.107 26 C -0.173 4.173 27 C -0.193 4.193 28 H 0.065 0.935 29 H 0.224 0.776 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.208 0.792 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.610 -7.426 -10.155 12.848 hybrid contribution 0.587 1.175 0.830 1.553 sum -2.022 -6.252 -9.325 11.407 Atomic orbital electron populations 1.69679 1.04988 1.25704 1.56595 1.24727 0.95425 0.97503 1.02638 0.86333 0.78555 0.83811 0.77780 1.21294 1.21730 1.21395 1.19155 0.90824 0.84077 1.43915 0.91337 1.42356 1.06043 0.98969 1.87978 1.20583 0.94986 0.87072 0.91877 0.91716 1.23032 0.86509 0.97215 0.95414 1.86578 1.32164 1.91864 1.25702 1.21557 0.99498 0.96890 0.82608 1.45906 1.50221 1.21746 1.17732 1.19202 0.78339 0.84738 0.84362 1.90670 1.59223 1.20304 1.71432 1.19899 0.97735 1.03491 0.90688 1.18743 0.91628 0.94594 1.03265 1.20920 0.99093 0.91359 0.97606 1.21159 0.92709 1.00040 1.00383 1.21005 0.98287 0.94399 0.96902 1.21107 0.98144 0.94602 1.03860 1.17568 0.94328 0.79763 0.98938 1.91553 1.96691 1.34885 1.87585 1.22990 1.01991 0.95069 0.97201 1.23157 0.96554 1.00579 0.99023 0.93452 0.77647 0.95572 0.93335 0.79190 0.90743 0.92139 0.75409 0.84804 0.85193 0.85153 0.84879 0.87753 0.87997 0.87512 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 13.06 55.49 0.72 -26.06 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 9 N -0.71 -16.98 4.51 -53.42 -0.24 -17.23 16 10 C 0.17 3.20 2.84 -67.93 -0.19 3.01 16 11 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 12 C 0.06 1.05 6.86 37.16 0.25 1.31 16 13 O -0.56 -10.26 12.64 -35.23 -0.45 -10.70 16 14 C 0.12 2.21 5.12 -4.04 -0.02 2.19 16 15 N -0.71 -12.76 5.39 -60.29 -0.32 -13.08 16 16 C 0.55 10.08 6.66 -10.99 -0.07 10.01 16 17 O -0.54 -11.52 16.84 5.55 0.09 -11.43 16 18 C -0.11 -1.73 1.73 -156.82 -0.27 -2.00 16 19 C -0.08 -1.25 5.12 -104.55 -0.54 -1.78 16 20 C -0.07 -0.99 9.23 -39.59 -0.37 -1.36 16 21 C -0.12 -1.61 10.04 -39.58 -0.40 -2.00 16 22 C -0.09 -1.10 10.04 -39.60 -0.40 -1.49 16 23 C -0.16 -2.20 10.03 -39.52 -0.40 -2.59 16 24 C 0.11 1.84 7.18 -39.42 -0.28 1.56 16 25 F -0.13 -2.34 16.42 2.25 0.04 -2.30 16 26 C -0.14 -1.68 9.86 -26.73 -0.26 -1.94 16 27 C -0.16 -1.78 9.43 -26.73 -0.25 -2.03 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.39 10.42 7.80 -40.82 -0.32 10.11 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.36 4.82 9.12 45.56 0.42 5.24 16 33 H 0.07 1.58 7.39 -51.93 -0.38 1.20 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.41 7.41 8.14 -40.82 -0.33 7.07 16 36 H 0.13 1.62 7.02 -52.49 -0.37 1.25 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.11 1.02 7.14 -51.93 -0.37 0.65 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -33.07 373.15 -8.12 -41.20 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -5.13 Total: 21.59 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.44 Total: -4.02 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.16 Total: -56.37 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.35 Total: -22.13 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.07 -8.12 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755644223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.450 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds