Wall clock time and date at job start Tue Mar 31 2020 13:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47048 * 239.99953 * 3 2 1 5 5 H 1.48498 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47104 * 119.99927 * 3 2 1 7 7 C 1.38811 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99692 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00223 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99812 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47140 * 325.00698 * 10 9 7 12 12 C 1.53006 * 109.46704 * 85.00533 * 10 9 7 13 13 O 1.42898 * 109.47038 * 64.99884 * 12 10 9 14 14 C 1.52995 * 109.46984 * 205.00106 * 10 9 7 15 15 N 1.46510 * 109.47051 * 55.00413 * 14 10 9 16 16 C 1.34773 * 119.99937 * 179.97438 * 15 14 10 17 17 O 1.21283 * 120.00060 * 355.15960 * 16 15 14 18 18 C 1.50703 * 119.99900 * 175.15799 * 16 15 14 19 19 C 1.50698 * 115.54731 * 280.30931 * 18 16 15 20 20 C 1.38227 * 120.01141 * 114.45755 * 19 18 16 21 21 C 1.38224 * 120.02384 * 179.72136 * 20 19 18 22 22 C 1.38262 * 120.05218 * 0.55276 * 21 20 19 23 23 C 1.38175 * 120.02575 * 359.72006 * 22 21 20 24 24 C 1.38437 * 120.01701 * 294.73147 * 19 18 16 25 25 F 1.35093 * 120.02529 * 359.97438 * 24 19 18 26 26 C 1.52994 * 117.49846 * 134.60394 * 18 16 15 27 27 C 1.52997 * 117.49815 * 65.97883 * 18 16 15 28 28 H 0.96997 * 119.99953 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00237 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.46727 * 184.99696 * 12 10 9 31 31 H 1.09000 * 109.47316 * 304.99855 * 12 10 9 32 32 H 0.96700 * 113.99876 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47588 * 295.00814 * 14 10 9 34 34 H 1.09000 * 109.47100 * 175.00374 * 14 10 9 35 35 H 0.96999 * 119.99857 * 0.02562 * 15 14 10 36 36 H 1.08000 * 119.98661 * 359.97438 * 20 19 18 37 37 H 1.07996 * 119.97281 * 180.25438 * 21 20 19 38 38 H 1.08005 * 119.98749 * 179.74666 * 22 21 20 39 39 H 1.08002 * 120.01078 * 180.02562 * 23 22 21 40 40 H 1.09000 * 117.50252 * 359.97438 * 26 18 16 41 41 H 1.09006 * 117.50033 * 145.02381 * 26 18 16 42 42 H 1.09005 * 117.50082 * 214.97631 * 27 18 16 43 43 H 1.08997 * 117.50120 * 0.02562 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9683 -3.5503 -0.5916 12 6 2.4229 -4.0363 1.4350 13 8 1.2292 -4.2896 2.1785 14 6 1.1804 -4.7519 -0.6111 15 7 0.7329 -4.3346 -1.9423 16 6 -0.0566 -5.1465 -2.6730 17 8 -0.3249 -6.2575 -2.2672 18 6 -0.6062 -4.6737 -3.9942 19 6 -1.8083 -3.7687 -3.9117 20 6 -1.7145 -2.4547 -4.3306 21 6 -2.8185 -1.6260 -4.2604 22 6 -4.0146 -2.1067 -3.7605 23 6 -4.1091 -3.4182 -3.3358 24 6 -3.0054 -4.2511 -3.4109 25 9 -3.0968 -5.5336 -2.9965 26 6 -0.5288 -5.6400 -5.1779 27 6 0.3929 -4.4200 -5.1248 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 3.0434 -4.9323 1.4276 31 1 2.9729 -3.2173 1.8986 32 1 1.3850 -4.5367 3.1003 33 1 0.3133 -4.9200 0.0275 34 1 1.7553 -5.6743 -0.6936 35 1 1.0054 -3.4743 -2.2980 36 1 -0.7794 -2.0768 -4.7168 37 1 -2.7454 -0.6007 -4.5918 38 1 -4.8754 -1.4571 -3.7023 39 1 -5.0437 -3.7936 -2.9457 40 1 -0.0801 -6.6175 -5.0012 41 1 -1.3476 -5.6213 -5.8973 42 1 0.1806 -3.5986 -5.8092 43 1 1.4477 -4.5953 -4.9131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755644223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:40 Heat of formation + Delta-G solvation = -88.421384 kcal Electronic energy + Delta-G solvation = -27927.114899 eV Core-core repulsion = 23887.018672 eV Total energy + Delta-G solvation = -4040.096227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.85325 -41.37902 -39.81001 -38.67361 -37.38464 -36.38851 -35.15699 -33.09011 -31.80225 -31.32773 -30.13877 -27.26090 -25.70441 -25.17791 -24.02139 -23.05951 -22.86628 -21.64190 -20.58404 -19.40187 -18.83809 -18.17255 -18.04761 -17.34367 -17.11209 -16.82307 -16.66922 -16.41450 -16.02678 -15.83438 -15.36160 -15.13211 -15.04777 -14.91905 -14.65030 -14.28232 -14.14522 -13.85233 -13.63360 -13.30412 -13.03712 -12.80840 -12.71745 -12.63585 -12.52350 -12.28528 -12.20612 -11.92958 -11.71168 -11.64680 -11.47879 -10.98965 -10.84963 -10.73400 -10.03320 -9.88473 -9.58680 -8.97749 -7.85243 -5.15360 0.15098 0.25826 1.52066 1.53552 1.54506 1.59549 2.16947 2.52317 2.60124 2.77115 3.32719 3.43063 3.45194 3.60212 3.68611 3.79160 3.88062 3.89808 3.99519 4.07641 4.15161 4.38500 4.41736 4.43982 4.54410 4.57280 4.64502 4.66261 4.84742 4.89510 4.96237 4.98675 5.10628 5.14025 5.19208 5.20820 5.36976 5.47660 5.48479 5.57696 5.94854 6.31653 6.57017 7.04744 7.21442 7.39984 8.10640 8.37725 9.36698 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.005029 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.440089 B = 5566.903760 C = 6926.850360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.302 1.302 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.720 5.720 10 C 0.163 3.837 11 H 0.081 0.919 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.129 3.871 15 N -0.702 5.702 16 C 0.546 3.454 17 O -0.577 6.577 18 C -0.142 4.142 19 C -0.090 4.090 20 C -0.081 4.081 21 C -0.127 4.127 22 C -0.088 4.088 23 C -0.164 4.164 24 C 0.075 3.925 25 F -0.150 7.150 26 C -0.131 4.131 27 C -0.129 4.129 28 H 0.248 0.752 29 H 0.371 0.629 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.385 0.615 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.411 0.589 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.131 0.869 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -5.933 -11.029 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.258 4.258 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.360 5.360 10 C 0.054 3.946 11 H 0.099 0.901 12 C -0.017 4.017 13 O -0.392 6.392 14 C 0.005 3.995 15 N -0.352 5.352 16 C 0.333 3.667 17 O -0.457 6.457 18 C -0.145 4.145 19 C -0.091 4.091 20 C -0.099 4.099 21 C -0.145 4.145 22 C -0.106 4.106 23 C -0.183 4.183 24 C 0.056 3.944 25 F -0.129 7.129 26 C -0.168 4.168 27 C -0.165 4.165 28 H 0.057 0.943 29 H 0.203 0.797 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.233 0.767 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.179 0.821 39 H 0.165 0.835 40 H 0.116 0.884 41 H 0.133 0.867 42 H 0.149 0.851 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.204 -6.490 -11.277 13.067 hybrid contribution 0.173 0.803 1.226 1.475 sum -1.032 -5.687 -10.052 11.595 Atomic orbital electron populations 1.69849 1.06502 1.25732 1.58993 1.25437 0.96098 1.00570 1.03733 0.85328 0.77147 0.79836 0.78027 1.20005 1.22820 1.21226 1.19544 0.91390 0.84784 1.41454 0.90215 1.42437 1.05231 1.00118 1.88211 1.20825 0.95022 0.85322 0.93472 0.90077 1.22893 0.86493 0.98584 0.93685 1.86533 1.32998 1.92043 1.27600 1.21387 0.98271 0.97380 0.82482 1.45904 1.50239 1.21664 1.17432 1.19801 0.77485 0.84096 0.85355 1.90635 1.60417 1.21997 1.72680 1.19851 0.99237 1.05646 0.89760 1.18875 0.91334 0.95311 1.03616 1.21201 1.00248 0.90793 0.97627 1.21570 0.92452 1.01039 0.99425 1.21407 0.99386 0.94048 0.95716 1.21396 0.98150 0.95098 1.03644 1.18041 0.95906 0.79518 1.00936 1.91489 1.96875 1.36346 1.88158 1.23066 1.02756 0.95056 0.95951 1.23322 0.96216 1.00419 0.96575 0.94303 0.79740 0.91735 0.94338 0.76716 0.93837 0.90533 0.75306 0.83155 0.82786 0.82084 0.83482 0.88380 0.86666 0.85062 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.30 13.06 21.65 0.28 -56.01 16 2 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.97 43.63 29.55 68.60 2.03 45.66 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.24 -12.28 9.93 84.03 0.83 -11.45 16 8 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.72 -34.17 4.51 -322.93 -1.46 -35.63 16 10 C 0.16 6.09 2.84 44.99 0.13 6.22 16 11 H 0.08 2.79 8.08 -2.39 -0.02 2.77 16 12 C 0.06 2.15 6.86 71.98 0.49 2.64 16 13 O -0.59 -21.00 12.64 -148.98 -1.88 -22.88 16 14 C 0.13 4.80 5.12 86.38 0.44 5.24 16 15 N -0.70 -25.46 5.39 -463.05 -2.49 -27.95 16 16 C 0.55 20.34 6.66 87.66 0.58 20.93 16 17 O -0.58 -25.44 16.84 -3.04 -0.05 -25.49 16 18 C -0.14 -4.22 1.73 -53.68 -0.09 -4.31 16 19 C -0.09 -2.76 5.12 -19.82 -0.10 -2.86 16 20 C -0.08 -2.13 9.23 22.26 0.21 -1.92 16 21 C -0.13 -3.03 10.04 22.27 0.22 -2.80 16 22 C -0.09 -2.05 10.04 22.26 0.22 -1.83 16 23 C -0.16 -4.53 10.03 22.31 0.22 -4.31 16 24 C 0.08 2.50 7.18 22.38 0.16 2.66 16 25 F -0.15 -5.74 16.42 44.97 0.74 -5.00 16 26 C -0.13 -3.15 9.86 30.59 0.30 -2.85 16 27 C -0.13 -2.67 9.43 30.59 0.29 -2.39 16 28 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.37 20.22 7.80 -92.71 -0.72 19.50 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.38 9.76 9.12 -74.06 -0.68 9.08 16 33 H 0.04 1.89 7.39 -2.39 -0.02 1.88 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.41 14.72 8.14 -92.71 -0.75 13.96 16 36 H 0.15 3.32 7.02 -2.91 -0.02 3.30 16 37 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 40 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.13 2.09 7.14 -2.38 -0.02 2.07 16 43 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.73 373.15 0.46 -72.27 By element: Atomic # 1 Polarization: 56.20 SS G_CDS: -1.09 Total: 55.11 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 4.38 Total: -0.08 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -3.67 Total: -119.59 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -1.93 Total: -48.38 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.74 Total: -5.00 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.73 0.46 -72.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755644223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.151 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds