Wall clock time and date at job start Tue Mar 31 2020 13:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99845 * 179.72546 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47229 * 324.99851 * 10 9 7 12 12 C 1.52996 * 109.47520 * 84.99720 * 10 9 7 13 13 O 1.42907 * 109.47089 * 64.99826 * 12 10 9 14 14 C 1.52997 * 109.47306 * 204.99970 * 10 9 7 15 15 N 1.46504 * 109.46975 * 54.99511 * 14 10 9 16 16 C 1.34781 * 119.99981 * 180.02562 * 15 14 10 17 17 O 1.21289 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00180 * 180.02562 * 16 15 14 19 19 H 1.09003 * 115.54615 * 34.27322 * 18 16 15 20 20 C 1.52997 * 117.49877 * 248.61051 * 18 16 15 21 21 C 1.52996 * 59.99998 * 252.50983 * 20 18 16 22 22 H 1.08995 * 117.50558 * 107.48876 * 21 20 18 23 23 C 1.50708 * 117.49442 * 252.51286 * 21 20 18 24 24 C 1.38242 * 119.97567 * 8.34228 * 23 21 20 25 25 C 1.38196 * 120.02327 * 179.76758 * 24 23 21 26 26 C 1.38454 * 119.97524 * 0.50847 * 25 24 23 27 27 F 1.35109 * 120.02577 * 179.76679 * 26 25 24 28 28 C 1.38455 * 119.95043 * 359.74569 * 26 25 24 29 29 C 1.38202 * 119.97291 * 359.97438 * 28 26 25 30 30 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47651 * 184.99972 * 12 10 9 33 33 H 1.09003 * 109.47466 * 305.00281 * 12 10 9 34 34 H 0.96696 * 113.99881 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.47551 * 174.99379 * 14 10 9 36 36 H 1.08997 * 109.47144 * 294.99829 * 14 10 9 37 37 H 0.97001 * 119.99880 * 0.02562 * 15 14 10 38 38 H 1.09008 * 117.49908 * 359.97438 * 20 18 16 39 39 H 1.08996 * 117.50303 * 144.99243 * 20 18 16 40 40 H 1.07996 * 119.98486 * 0.02562 * 24 23 21 41 41 H 1.08006 * 120.01043 * 180.25332 * 25 24 23 42 42 H 1.08005 * 120.01541 * 180.02562 * 28 26 25 43 43 H 1.08004 * 119.98311 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 -0.0051 10 6 4.1121 -2.4708 -0.0051 11 1 3.5672 -3.2050 0.5884 12 6 4.2523 -2.9789 -1.4415 13 8 5.0653 -2.0729 -2.1900 14 6 5.5018 -2.2574 0.5982 15 7 5.3698 -1.6590 1.9289 16 6 6.4708 -1.3791 2.6542 17 8 7.5709 -1.6222 2.2050 18 6 6.3350 -0.7641 4.0233 19 1 5.4640 -1.0813 4.5968 20 6 6.8091 0.6799 4.1992 21 6 7.6220 -0.4704 4.7966 22 1 8.5670 -0.7221 4.3152 23 6 7.5889 -0.6419 6.2935 24 6 6.7128 0.1085 7.0554 25 6 6.6782 -0.0514 8.4277 26 6 7.5287 -0.9560 9.0404 27 9 7.4990 -1.1098 10.3823 28 6 8.4093 -1.7032 8.2768 29 6 8.4382 -1.5458 6.9041 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0099 32 1 4.7181 -3.9644 -1.4345 33 1 3.2661 -3.0465 -1.9009 34 1 5.1976 -2.3330 -3.1119 35 1 6.0135 -3.2163 0.6802 36 1 6.0783 -1.5916 -0.0440 37 1 4.4900 -1.4642 2.2880 38 1 7.2197 1.1849 3.3248 39 1 6.2502 1.3127 4.8885 40 1 6.0524 0.8169 6.5777 41 1 5.9908 0.5320 9.0223 42 1 9.0730 -2.4094 8.7536 43 1 9.1254 -2.1283 6.3083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755648181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:11 Heat of formation + Delta-G solvation = -68.325745 kcal Electronic energy + Delta-G solvation = -26185.235419 eV Core-core repulsion = 22146.010604 eV Total energy + Delta-G solvation = -4039.224814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.14847 -40.32170 -39.16350 -37.43631 -36.28383 -35.00901 -33.57560 -31.57260 -31.47075 -30.47719 -28.98850 -26.06686 -24.13131 -23.77116 -23.22444 -22.85008 -20.81871 -20.25118 -19.71557 -18.10679 -17.99832 -17.29854 -16.92028 -16.42256 -16.11980 -15.84466 -15.63448 -15.19759 -14.87879 -14.63002 -14.33283 -13.89375 -13.74704 -13.57455 -13.40408 -13.22925 -13.05484 -12.86510 -12.79065 -12.40038 -12.31986 -11.79339 -11.63892 -11.30387 -11.06391 -10.91393 -10.83680 -10.71720 -10.63113 -10.16393 -9.74348 -9.68677 -9.49794 -9.42281 -9.04279 -8.75709 -8.69971 -7.39281 -5.86895 -3.23502 0.77715 0.91959 2.61313 3.12898 3.32478 3.38473 3.40725 3.43532 3.84856 3.96992 4.32228 4.41631 4.51807 4.55325 4.62557 4.71724 4.77698 4.90067 4.96351 5.11488 5.16356 5.18069 5.32033 5.42002 5.45831 5.63045 5.68044 5.77869 5.79257 5.82004 5.85105 5.88001 5.89675 5.98126 6.18411 6.26766 6.34800 6.57063 6.57444 6.75946 7.80246 7.86478 8.07251 8.31928 8.44202 9.09814 9.82370 10.02410 11.30739 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.002788 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.466229 B =10040.256369 C =11155.010113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.090 0.910 9 N -0.738 5.738 10 C 0.171 3.829 11 H 0.074 0.926 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.115 3.885 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.552 6.552 18 C -0.174 4.174 19 H 0.127 0.873 20 C -0.144 4.144 21 C -0.087 4.087 22 H 0.129 0.871 23 C -0.059 4.059 24 C -0.091 4.091 25 C -0.149 4.149 26 C 0.091 3.909 27 F -0.142 7.142 28 C -0.151 4.151 29 C -0.080 4.080 30 H 0.260 0.740 31 H 0.366 0.634 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.366 0.634 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.410 0.590 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.598 -2.898 12.652 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.108 0.892 9 N -0.381 5.381 10 C 0.061 3.939 11 H 0.092 0.908 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.009 4.009 15 N -0.362 5.362 16 C 0.325 3.675 17 O -0.431 6.431 18 C -0.195 4.195 19 H 0.144 0.856 20 C -0.181 4.181 21 C -0.105 4.105 22 H 0.147 0.853 23 C -0.059 4.059 24 C -0.109 4.109 25 C -0.168 4.168 26 C 0.071 3.929 27 F -0.121 7.121 28 C -0.170 4.170 29 C -0.099 4.099 30 H 0.070 0.930 31 H 0.199 0.801 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.212 0.788 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.100 -2.835 12.960 20.862 hybrid contribution -0.154 0.871 -0.269 0.924 sum 15.946 -1.964 12.690 20.474 Atomic orbital electron populations 1.69699 1.05148 1.25998 1.56899 1.24650 0.95159 0.97248 1.01585 0.86554 0.79093 0.84859 0.77992 1.21079 1.21836 1.20219 1.19044 0.80408 0.94703 1.43908 0.89178 1.42719 1.03872 1.01783 1.89759 1.20566 0.90452 0.90596 0.92293 0.90777 1.22999 0.93917 0.90451 0.94851 1.86516 1.72549 1.51995 1.25838 1.21609 0.98359 0.98293 0.82617 1.45953 1.09432 1.62673 1.18113 1.19517 0.84412 0.78064 0.85508 1.90666 1.26217 1.54102 1.72126 1.22374 1.00025 1.01017 0.96057 0.85556 1.23145 1.02034 0.89618 1.03307 1.21043 0.96453 1.03077 0.89950 0.85308 1.19226 0.96514 0.96575 0.93574 1.20998 0.98276 0.98960 0.92623 1.21139 1.00353 0.99700 0.95618 1.17751 0.98910 0.99059 0.77141 1.91500 1.95757 1.94797 1.30029 1.21141 1.00217 1.01270 0.94370 1.20886 0.98407 0.97117 0.93440 0.92957 0.80071 0.95093 0.92744 0.78841 0.91692 0.90639 0.75354 0.87529 0.87341 0.84602 0.84620 0.84660 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.97 55.49 0.78 -27.23 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.52 27.73 -169.99 -4.71 16.81 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.32 6.53 56.52 0.37 -5.95 16 7 C -0.25 -6.57 10.41 -15.06 -0.16 -6.72 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.74 -16.18 4.31 -53.43 -0.23 -16.41 16 10 C 0.17 3.04 2.84 -67.94 -0.19 2.84 16 11 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 12 C 0.06 0.95 6.86 37.16 0.25 1.21 16 13 O -0.57 -9.24 12.64 -35.23 -0.45 -9.68 16 14 C 0.12 1.89 5.12 -4.04 -0.02 1.87 16 15 N -0.71 -11.15 5.39 -60.29 -0.32 -11.48 16 16 C 0.54 8.30 7.61 -10.98 -0.08 8.22 16 17 O -0.55 -10.05 16.26 5.55 0.09 -9.96 16 18 C -0.17 -2.06 5.82 -91.78 -0.53 -2.60 16 19 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 20 C -0.14 -1.49 9.56 -26.73 -0.26 -1.74 16 21 C -0.09 -0.91 5.55 -91.77 -0.51 -1.42 16 22 H 0.13 1.47 7.67 -51.93 -0.40 1.07 16 23 C -0.06 -0.56 5.61 -104.61 -0.59 -1.15 16 24 C -0.09 -0.80 9.30 -39.60 -0.37 -1.17 16 25 C -0.15 -1.33 10.03 -39.52 -0.40 -1.73 16 26 C 0.09 0.88 7.30 -39.42 -0.29 0.59 16 27 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 28 C -0.15 -1.33 10.03 -39.51 -0.40 -1.72 16 29 C -0.08 -0.72 9.73 -39.59 -0.39 -1.10 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.37 8.33 5.67 -40.82 -0.23 8.09 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.37 4.23 9.12 45.56 0.42 4.64 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.38 7.39 -51.93 -0.38 1.00 16 37 H 0.41 6.38 8.14 -40.82 -0.33 6.05 16 38 H 0.11 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.11 0.90 6.17 -51.93 -0.32 0.58 16 40 H 0.14 1.00 6.01 -52.49 -0.32 0.69 16 41 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -32.80 369.08 -8.22 -41.03 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -4.96 Total: 17.27 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -4.02 Total: -4.45 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.22 Total: -55.12 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.35 Total: -19.64 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.80 -8.22 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755648181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.298 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds