Wall clock time and date at job start Tue Mar 31 2020 13:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75891 * 125.20332 * 2 1 4 4 C 1.75882 * 90.96935 * 179.97438 * 3 2 1 5 5 C 1.33385 * 109.59753 * 0.02562 * 4 3 2 6 6 C 1.33385 * 125.20331 * 179.97438 * 2 1 3 7 7 C 1.50699 * 122.54181 * 359.97438 * 6 2 1 8 8 C 1.50696 * 109.46827 * 85.00404 * 7 6 2 9 9 O 1.21287 * 120.00410 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00131 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00152 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46308 * 324.99809 * 11 10 8 13 13 C 1.53040 * 109.45991 * 84.97560 * 11 10 8 14 14 C 1.53195 * 109.31235 * 181.38724 * 13 11 10 15 15 N 1.46928 * 108.77243 * 305.36057 * 14 13 11 16 16 C 1.36939 * 120.63308 * 233.58884 * 15 14 13 17 17 H 1.07993 * 120.00039 * 151.83332 * 16 15 14 18 18 C 1.38816 * 119.99749 * 331.83589 * 16 15 14 19 19 N 1.31625 * 119.99798 * 343.07568 * 18 16 15 20 20 Si 1.86792 * 120.00034 * 163.07653 * 18 16 15 21 21 H 1.48499 * 109.47202 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47535 * 120.00032 * 20 18 16 23 23 H 1.48503 * 109.47110 * 239.99872 * 20 18 16 24 24 C 1.46928 * 118.73819 * 53.61403 * 15 14 13 25 25 C 1.53043 * 109.45995 * 205.02682 * 11 10 8 26 26 H 1.09003 * 109.49728 * 298.57056 * 25 11 10 27 27 C 1.53006 * 109.49698 * 58.66373 * 25 11 10 28 28 H 1.09001 * 109.46760 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46632 * 120.02105 * 1 2 3 30 30 H 1.08997 * 109.46999 * 240.02033 * 1 2 3 31 31 H 1.08007 * 125.19885 * 179.73347 * 4 3 2 32 32 H 1.07996 * 122.54008 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47300 * 205.00295 * 7 6 2 34 34 H 1.09002 * 109.47144 * 325.00911 * 7 6 2 35 35 H 0.97002 * 119.99748 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.49215 * 301.33138 * 13 11 10 37 37 H 1.08991 * 109.49907 * 61.43255 * 13 11 10 38 38 H 1.08995 * 109.58853 * 65.14457 * 14 13 11 39 39 H 1.08996 * 109.58333 * 185.57897 * 14 13 11 40 40 H 0.97002 * 119.99393 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.59098 * 66.17467 * 24 15 14 42 42 H 1.08999 * 109.58750 * 186.46299 * 24 15 14 43 43 H 1.08999 * 109.47056 * 59.99392 * 27 25 11 44 44 H 1.08998 * 109.47005 * 180.02562 * 27 25 11 45 45 H 1.09000 * 109.46918 * 300.00188 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9751 0.4478 0.0008 5 6 3.6380 -0.8428 0.0004 6 6 2.2760 -1.0899 0.0005 7 6 1.7052 -2.4846 0.0017 8 6 1.4000 -2.9036 -1.4133 9 8 1.6243 -2.1446 -2.3324 10 7 0.8777 -4.1219 -1.6577 11 6 0.5815 -4.5294 -3.0333 12 1 0.2430 -3.6642 -3.6035 13 6 1.8452 -5.1027 -3.6785 14 6 1.5406 -5.4957 -5.1276 15 7 0.3901 -6.4094 -5.1378 16 6 0.4704 -7.6254 -5.7624 17 1 -0.1345 -8.4508 -5.4172 18 6 1.3294 -7.7972 -6.8393 19 7 1.8101 -6.7476 -7.4715 20 14 1.8031 -9.5177 -7.3910 21 1 1.1338 -10.5183 -6.5214 22 1 1.3772 -9.7210 -8.7989 23 1 3.2757 -9.6819 -7.2907 24 6 -0.8484 -5.9935 -4.4656 25 6 -0.5168 -5.5952 -3.0240 26 1 -0.1695 -6.4706 -2.4751 27 6 -1.7692 -5.0321 -2.3491 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3633 -0.5135 0.8901 31 1 4.9863 0.8272 -0.0030 32 1 4.3721 -1.6349 0.0004 33 1 2.4297 -3.1733 0.4362 34 1 0.7886 -2.5016 0.5913 35 1 0.6979 -4.7288 -0.9226 36 1 2.6343 -4.3509 -3.6637 37 1 2.1699 -5.9827 -3.1235 38 1 1.3033 -4.6029 -5.7061 39 1 2.4075 -5.9947 -5.5607 40 1 2.4101 -6.8676 -8.2242 41 1 -1.2805 -5.1413 -4.9902 42 1 -1.5588 -6.8202 -4.4642 43 1 -2.1164 -4.1577 -2.8994 44 1 -2.5509 -5.7917 -2.3424 45 1 -1.5322 -4.7460 -1.3244 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943377306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:02 Heat of formation + Delta-G solvation = 3.913443 kcal Electronic energy + Delta-G solvation = -25314.429098 eV Core-core repulsion = 21844.549986 eV Total energy + Delta-G solvation = -3469.879112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02437 -38.44383 -37.23265 -34.46930 -32.68944 -32.29616 -31.21557 -30.55861 -29.33169 -26.05641 -25.77506 -24.75486 -22.89082 -22.08050 -20.97877 -20.25076 -19.37466 -18.37750 -17.26970 -16.98338 -16.55369 -16.02539 -15.22073 -14.87139 -14.69514 -14.21147 -13.89136 -13.68100 -13.59505 -13.38478 -13.16046 -12.91102 -12.85541 -12.64144 -12.53537 -12.17081 -12.11594 -11.82610 -11.59927 -11.45496 -11.29311 -11.05907 -10.84271 -10.79356 -10.63962 -10.32545 -10.20125 -10.00210 -9.77206 -9.75028 -9.41607 -8.64938 -8.61961 -8.43365 -8.40579 -6.67421 -5.78025 -3.21298 0.93160 1.55198 1.89179 2.56127 2.87094 3.37106 3.45047 3.47055 3.55684 4.49310 4.65603 4.74110 4.93759 5.03074 5.17309 5.21814 5.23879 5.31922 5.38016 5.41128 5.44084 5.50859 5.52961 5.63450 5.80736 5.92027 5.97761 5.99068 6.11499 6.26269 6.28235 6.28787 6.41410 6.43441 6.45913 6.63650 6.68520 6.80051 6.97147 6.98241 7.38872 7.68508 7.78487 7.80296 8.45275 8.49754 9.21389 9.84773 10.41549 11.30390 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.002770 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.546450 B =10104.614411 C =10781.741307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.159 4.159 3 S 0.086 5.914 4 C -0.218 4.218 5 C -0.115 4.115 6 C -0.090 4.090 7 C -0.082 4.082 8 C 0.510 3.490 9 O -0.530 6.530 10 N -0.725 5.725 11 C 0.158 3.842 12 H 0.080 0.920 13 C -0.147 4.147 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.155 3.845 25 C -0.114 4.114 26 H 0.070 0.930 27 C -0.141 4.141 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.394 0.606 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.019 0.981 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 11.698 19.838 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.277 4.277 3 S 0.350 5.650 4 C -0.353 4.353 5 C -0.145 4.145 6 C -0.103 4.103 7 C -0.125 4.125 8 C 0.295 3.705 9 O -0.406 6.406 10 N -0.376 5.376 11 C 0.055 3.945 12 H 0.098 0.902 13 C -0.187 4.187 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.027 3.973 25 C -0.135 4.135 26 H 0.089 0.911 27 C -0.199 4.199 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.155 0.845 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.227 0.773 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.242 13.832 18.990 23.526 hybrid contribution 0.726 -2.638 -0.052 2.737 sum -0.516 11.194 18.938 22.005 Atomic orbital electron populations 1.20333 0.88018 1.02801 1.02956 1.24203 0.99745 0.95144 1.08571 1.84114 0.97247 1.09781 1.73821 1.25407 1.01594 0.96632 1.11713 1.19983 0.95505 0.96550 1.02466 1.18178 0.92850 0.94240 1.04993 1.20361 1.02671 0.93914 0.95519 1.20430 0.77539 0.81751 0.90772 1.90735 1.51455 1.52319 1.46041 1.46302 1.64828 1.16333 1.10086 1.21018 0.95606 0.97102 0.80780 0.90176 1.22563 0.96158 0.99315 1.00672 1.20749 0.92276 0.92731 0.89472 1.44109 1.07319 1.17752 1.62313 1.19205 1.23499 0.87183 1.08454 0.91628 1.25069 1.01777 0.97010 0.95787 1.70052 1.35279 1.27812 1.21320 0.86238 0.78141 0.84325 0.78146 1.20270 1.21722 1.21580 1.20889 0.89909 0.97488 0.88968 1.21964 0.94063 0.97297 1.00215 0.91120 1.21765 0.97747 1.00775 0.99609 0.91533 0.90276 0.90686 0.82031 0.84453 0.88233 0.88373 0.77315 0.92885 0.92749 0.96213 0.89337 0.93640 0.96281 0.92442 0.92963 0.92809 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.53 36.01 0.34 -0.43 16 2 C -0.16 -1.82 6.51 -36.00 -0.23 -2.05 16 3 S 0.09 0.91 23.33 -107.50 -2.51 -1.59 16 4 C -0.22 -2.31 11.23 29.04 0.33 -1.98 16 5 C -0.11 -1.31 9.96 -41.21 -0.41 -1.72 16 6 C -0.09 -1.06 4.29 -106.25 -0.46 -1.52 16 7 C -0.08 -0.83 5.62 -29.04 -0.16 -0.99 16 8 C 0.51 7.19 7.79 -10.98 -0.09 7.10 16 9 O -0.53 -9.96 15.70 5.55 0.09 -9.88 16 10 N -0.72 -9.62 4.36 -53.76 -0.23 -9.86 16 11 C 0.16 2.70 1.88 -67.89 -0.13 2.57 16 12 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 13 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 14 C 0.17 4.26 5.30 -3.71 -0.02 4.24 16 15 N -0.59 -14.76 2.99 -172.32 -0.52 -15.28 16 16 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -26.39 11.20 55.49 0.62 -25.77 16 20 Si 0.90 21.65 29.59 -169.99 -5.03 16.63 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.15 3.16 5.80 -3.71 -0.02 3.14 16 25 C -0.11 -1.85 2.46 -90.49 -0.22 -2.08 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 C -0.14 -1.81 9.03 37.16 0.34 -1.48 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.55 7.96 -51.93 -0.41 0.13 16 31 H 0.16 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.10 0.75 7.52 -51.93 -0.39 0.36 16 35 H 0.39 4.02 8.31 -40.82 -0.34 3.69 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -32.54 374.44 -10.32 -42.86 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.27 Total: 2.60 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.12 Total: -5.35 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.13 Total: -50.90 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.54 -10.32 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943377306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.775 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds