Wall clock time and date at job start Tue Mar 31 2020 13:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75891 * 125.20332 * 2 1 4 4 C 1.75882 * 90.96935 * 179.97438 * 3 2 1 5 5 C 1.33385 * 109.59753 * 0.02562 * 4 3 2 6 6 C 1.33385 * 125.20331 * 179.97438 * 2 1 3 7 7 C 1.50699 * 122.54181 * 359.97438 * 6 2 1 8 8 C 1.50696 * 109.46827 * 85.00404 * 7 6 2 9 9 O 1.21287 * 120.00410 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00131 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00152 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46308 * 324.99809 * 11 10 8 13 13 C 1.53040 * 109.45991 * 84.97560 * 11 10 8 14 14 C 1.53195 * 109.31235 * 181.38724 * 13 11 10 15 15 N 1.46928 * 108.77243 * 305.36057 * 14 13 11 16 16 C 1.36939 * 120.63308 * 233.58884 * 15 14 13 17 17 H 1.07993 * 120.00039 * 151.83332 * 16 15 14 18 18 C 1.38816 * 119.99749 * 331.83589 * 16 15 14 19 19 N 1.31625 * 119.99798 * 343.07568 * 18 16 15 20 20 Si 1.86792 * 120.00034 * 163.07653 * 18 16 15 21 21 H 1.48499 * 109.47202 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47535 * 120.00032 * 20 18 16 23 23 H 1.48503 * 109.47110 * 239.99872 * 20 18 16 24 24 C 1.46928 * 118.73819 * 53.61403 * 15 14 13 25 25 C 1.53043 * 109.45995 * 205.02682 * 11 10 8 26 26 H 1.09003 * 109.49728 * 298.57056 * 25 11 10 27 27 C 1.53006 * 109.49698 * 58.66373 * 25 11 10 28 28 H 1.09001 * 109.46760 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46632 * 120.02105 * 1 2 3 30 30 H 1.08997 * 109.46999 * 240.02033 * 1 2 3 31 31 H 1.08007 * 125.19885 * 179.73347 * 4 3 2 32 32 H 1.07996 * 122.54008 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47300 * 205.00295 * 7 6 2 34 34 H 1.09002 * 109.47144 * 325.00911 * 7 6 2 35 35 H 0.97002 * 119.99748 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.49215 * 301.33138 * 13 11 10 37 37 H 1.08991 * 109.49907 * 61.43255 * 13 11 10 38 38 H 1.08995 * 109.58853 * 65.14457 * 14 13 11 39 39 H 1.08996 * 109.58333 * 185.57897 * 14 13 11 40 40 H 0.97002 * 119.99393 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.59098 * 66.17467 * 24 15 14 42 42 H 1.08999 * 109.58750 * 186.46299 * 24 15 14 43 43 H 1.08999 * 109.47056 * 59.99392 * 27 25 11 44 44 H 1.08998 * 109.47005 * 180.02562 * 27 25 11 45 45 H 1.09000 * 109.46918 * 300.00188 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9751 0.4478 0.0008 5 6 3.6380 -0.8428 0.0004 6 6 2.2760 -1.0899 0.0005 7 6 1.7052 -2.4846 0.0017 8 6 1.4000 -2.9036 -1.4133 9 8 1.6243 -2.1446 -2.3324 10 7 0.8777 -4.1219 -1.6577 11 6 0.5815 -4.5294 -3.0333 12 1 0.2430 -3.6642 -3.6035 13 6 1.8452 -5.1027 -3.6785 14 6 1.5406 -5.4957 -5.1276 15 7 0.3901 -6.4094 -5.1378 16 6 0.4704 -7.6254 -5.7624 17 1 -0.1345 -8.4508 -5.4172 18 6 1.3294 -7.7972 -6.8393 19 7 1.8101 -6.7476 -7.4715 20 14 1.8031 -9.5177 -7.3910 21 1 1.1338 -10.5183 -6.5214 22 1 1.3772 -9.7210 -8.7989 23 1 3.2757 -9.6819 -7.2907 24 6 -0.8484 -5.9935 -4.4656 25 6 -0.5168 -5.5952 -3.0240 26 1 -0.1695 -6.4706 -2.4751 27 6 -1.7692 -5.0321 -2.3491 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3633 -0.5135 0.8901 31 1 4.9863 0.8272 -0.0030 32 1 4.3721 -1.6349 0.0004 33 1 2.4297 -3.1733 0.4362 34 1 0.7886 -2.5016 0.5913 35 1 0.6979 -4.7288 -0.9226 36 1 2.6343 -4.3509 -3.6637 37 1 2.1699 -5.9827 -3.1235 38 1 1.3033 -4.6029 -5.7061 39 1 2.4075 -5.9947 -5.5607 40 1 2.4101 -6.8676 -8.2242 41 1 -1.2805 -5.1413 -4.9902 42 1 -1.5588 -6.8202 -4.4642 43 1 -2.1164 -4.1577 -2.8994 44 1 -2.5509 -5.7917 -2.3424 45 1 -1.5322 -4.7460 -1.3244 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943377306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:01 Heat of formation + Delta-G solvation = -15.492428 kcal Electronic energy + Delta-G solvation = -25315.270600 eV Core-core repulsion = 21844.549986 eV Total energy + Delta-G solvation = -3470.720614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19008 -39.63603 -38.48959 -36.12190 -34.17331 -33.12396 -32.91573 -31.95026 -30.58646 -27.40887 -27.13326 -26.17704 -24.07336 -23.37677 -22.63453 -21.46913 -20.87152 -19.28996 -18.71842 -18.06738 -17.88010 -17.27326 -16.73253 -16.24018 -15.83690 -15.59359 -15.48996 -15.10254 -14.75439 -14.61486 -14.35441 -14.25072 -14.15098 -13.64272 -13.62284 -13.35837 -13.06757 -13.01352 -12.94466 -12.72312 -12.62362 -12.60600 -12.35321 -12.26488 -12.06163 -12.00641 -11.65213 -11.63292 -11.54637 -11.25145 -10.78779 -10.58351 -9.91038 -9.42663 -9.26489 -8.71657 -7.88196 -5.35089 0.11482 0.76042 1.08701 1.46316 1.47925 1.58891 1.69473 1.78005 2.45369 2.50733 3.27667 3.63017 3.77613 3.85273 3.98934 4.06375 4.11553 4.19710 4.28294 4.40101 4.49069 4.54665 4.61483 4.66939 4.73935 4.74501 4.77298 4.79872 4.87428 4.93655 5.04116 5.08853 5.12816 5.17136 5.20060 5.32273 5.39986 5.49140 5.52814 5.61920 5.63700 5.64936 5.69510 6.37327 6.72431 7.12125 7.43190 7.83084 8.36165 9.18782 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.002770 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.546450 B =10104.614411 C =10781.741307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.174 4.174 3 S 0.082 5.918 4 C -0.225 4.225 5 C -0.133 4.133 6 C -0.108 4.108 7 C -0.072 4.072 8 C 0.510 3.490 9 O -0.582 6.582 10 N -0.709 5.709 11 C 0.172 3.828 12 H 0.051 0.949 13 C -0.131 4.131 14 C 0.184 3.816 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.074 0.926 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.148 3.852 25 C -0.099 4.099 26 H 0.081 0.919 27 C -0.133 4.133 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.181 0.819 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.415 0.585 36 H 0.043 0.957 37 H 0.062 0.938 38 H -0.016 1.016 39 H 0.054 0.946 40 H 0.249 0.751 41 H 0.006 0.994 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 10.695 23.047 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.291 4.291 3 S 0.346 5.654 4 C -0.360 4.360 5 C -0.163 4.163 6 C -0.121 4.121 7 C -0.114 4.114 8 C 0.298 3.702 9 O -0.461 6.461 10 N -0.361 5.361 11 C 0.067 3.933 12 H 0.069 0.931 13 C -0.171 4.171 14 C 0.057 3.943 15 N -0.332 5.332 16 C -0.390 4.390 17 H 0.092 0.908 18 C -0.250 4.250 19 N -0.585 5.585 20 Si 0.797 3.203 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.023 3.977 25 C -0.120 4.120 26 H 0.099 0.901 27 C -0.191 4.191 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.198 0.802 32 H 0.166 0.834 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.252 0.748 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.205 12.809 22.272 25.787 hybrid contribution 0.999 -2.248 -1.080 2.686 sum -1.206 10.562 21.191 23.708 Atomic orbital electron populations 1.20381 0.86789 1.03512 1.03275 1.24574 1.00847 0.95284 1.08392 1.84087 0.97563 1.10010 1.73745 1.25729 1.02465 0.96603 1.11158 1.20259 0.95949 0.97198 1.02888 1.18459 0.93111 0.95152 1.05329 1.20396 1.04858 0.93446 0.92654 1.21182 0.76032 0.80990 0.92031 1.90728 1.53477 1.53797 1.48109 1.45995 1.64480 1.16757 1.08869 1.20560 0.94190 0.96082 0.82506 0.93124 1.22307 0.97558 0.99367 0.97872 1.20444 0.91157 0.90884 0.91807 1.44358 1.08882 1.17311 1.62684 1.19600 1.23012 0.88294 1.08109 0.90838 1.25893 1.02275 1.00591 0.96263 1.70228 1.36279 1.30022 1.21991 0.85174 0.77410 0.80202 0.77465 1.18507 1.22105 1.21890 1.21099 0.88319 0.97216 0.91114 1.21752 0.95429 0.97357 0.97444 0.90061 1.21710 0.96066 1.00683 1.00603 0.90794 0.91910 0.88148 0.80208 0.83424 0.85542 0.85125 0.74797 0.93843 0.91913 0.99750 0.92797 0.94223 0.97606 0.91699 0.93801 0.91300 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.53 71.24 0.68 -0.68 16 2 C -0.17 -3.71 6.51 24.59 0.16 -3.55 16 3 S 0.08 1.67 23.33 -56.49 -1.32 0.35 16 4 C -0.22 -4.51 11.23 66.72 0.75 -3.76 16 5 C -0.13 -2.84 9.96 21.22 0.21 -2.63 16 6 C -0.11 -2.34 4.29 -20.92 -0.09 -2.42 16 7 C -0.07 -1.21 5.62 29.10 0.16 -1.04 16 8 C 0.51 13.37 7.79 87.65 0.68 14.05 16 9 O -0.58 -21.86 15.70 -3.05 -0.05 -21.90 16 10 N -0.71 -16.94 4.36 -442.40 -1.93 -18.87 16 11 C 0.17 5.72 1.88 45.02 0.08 5.81 16 12 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 13 C -0.13 -5.28 5.65 30.67 0.17 -5.11 16 14 C 0.18 9.42 5.30 86.36 0.46 9.88 16 15 N -0.61 -30.92 2.99 -699.09 -2.09 -33.01 16 16 C -0.26 -14.28 9.58 84.03 0.81 -13.47 16 17 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 18 C -0.06 -3.12 4.92 84.86 0.42 -2.71 16 19 N -0.94 -57.29 11.20 21.65 0.24 -57.05 16 20 Si 0.97 45.10 29.59 68.60 2.03 47.12 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 C 0.15 6.02 5.80 86.36 0.50 6.52 16 25 C -0.10 -3.01 2.46 -10.71 -0.03 -3.03 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 27 C -0.13 -2.96 9.03 71.98 0.65 -2.31 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.13 7.96 -2.39 -0.02 1.11 16 31 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.13 1.49 8.11 -2.39 -0.02 1.47 16 34 H 0.13 1.37 7.52 -2.39 -0.02 1.35 16 35 H 0.41 6.63 8.31 -92.71 -0.77 5.86 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.05 3.11 6.06 -2.39 -0.01 3.10 16 40 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.06 2.50 7.93 -2.39 -0.02 2.49 16 43 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.29 7.36 -2.39 -0.02 1.27 16 Total: -1.00 -74.68 374.44 2.71 -71.97 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.21 Total: 15.84 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.62 Total: -4.45 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -3.78 Total: -108.93 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.35 kcal Total: -74.68 2.71 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943377306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.474 kcal (2) G-P(sol) polarization free energy of solvation -74.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds