Wall clock time and date at job start Tue Mar 31 2020 13:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32763 * 124.71204 * 2 1 4 4 C 1.44425 * 113.08542 * 180.14870 * 3 2 1 5 5 C 1.47190 * 123.46199 * 179.81402 * 4 3 2 6 6 O 1.21636 * 119.99705 * 179.70394 * 5 4 3 7 7 N 1.34772 * 119.99966 * 359.69405 * 5 4 3 8 8 C 1.46502 * 119.99877 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46228 * 35.02821 * 8 7 5 10 10 C 1.53038 * 109.45900 * 275.07070 * 8 7 5 11 11 C 1.52765 * 109.38424 * 301.21763 * 10 8 7 12 12 N 1.46924 * 109.00726 * 305.59230 * 11 10 8 13 13 C 1.36940 * 120.62840 * 233.58467 * 12 11 10 14 14 H 1.07998 * 119.99935 * 150.69862 * 13 12 11 15 15 C 1.38807 * 119.99862 * 330.69507 * 13 12 11 16 16 N 1.31628 * 120.00356 * 336.07655 * 15 13 12 17 17 Si 1.86800 * 120.00149 * 156.07948 * 15 13 12 18 18 H 1.48504 * 109.47268 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.46887 * 299.99602 * 17 15 13 20 20 H 1.48493 * 109.47418 * 59.99607 * 17 15 13 21 21 C 1.46924 * 118.74146 * 53.30696 * 12 11 10 22 22 H 1.08999 * 109.58588 * 66.57335 * 21 12 11 23 23 C 1.53001 * 109.58908 * 186.85518 * 21 12 11 24 24 C 1.53043 * 109.46228 * 155.00206 * 8 7 5 25 25 C 1.36010 * 113.07451 * 359.53283 * 4 3 2 26 26 C 1.50708 * 124.58941 * 180.24475 * 25 4 3 27 27 S 1.70443 * 110.81977 * 0.25568 * 25 4 3 28 28 H 1.09004 * 109.46889 * 180.31168 * 1 2 3 29 29 H 1.08997 * 109.47126 * 300.31125 * 1 2 3 30 30 H 1.08996 * 109.47334 * 60.31919 * 1 2 3 31 31 H 1.08010 * 123.45942 * 359.93110 * 3 2 1 32 32 H 0.96998 * 120.00428 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.49855 * 61.29642 * 10 8 7 34 34 H 1.09002 * 109.49456 * 181.39612 * 10 8 7 35 35 H 1.08997 * 109.50761 * 185.70928 * 11 10 8 36 36 H 1.08995 * 109.43030 * 65.42464 * 11 10 8 37 37 H 0.97004 * 119.99318 * 354.30837 * 16 15 13 38 38 H 1.09007 * 109.47126 * 59.99793 * 23 21 12 39 39 H 1.08998 * 109.47477 * 179.97438 * 23 21 12 40 40 H 1.08996 * 109.47286 * 300.00173 * 23 21 12 41 41 H 1.09005 * 109.49682 * 298.70608 * 24 8 7 42 42 H 1.08995 * 109.50286 * 178.60701 * 24 8 7 43 43 H 1.08995 * 109.46367 * 90.00922 * 26 25 4 44 44 H 1.08993 * 109.46779 * 210.00904 * 26 25 4 45 45 H 1.08998 * 109.46978 * 330.00881 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0913 0.0000 4 6 3.6777 0.8003 -0.0034 5 6 4.7201 1.8395 -0.0081 6 8 5.8945 1.5228 -0.0054 7 7 4.3732 3.1418 -0.0156 8 6 5.4108 4.1761 -0.0208 9 1 6.2624 3.8332 -0.6083 10 6 5.8611 4.4537 1.4152 11 6 4.6602 4.9043 2.2450 12 7 4.0216 6.0486 1.5805 13 6 3.7996 7.2158 2.2612 14 1 3.7894 8.1566 1.7310 15 6 3.5876 7.1898 3.6328 16 7 3.1357 6.0957 4.2083 17 14 3.9435 8.7076 4.6619 18 1 3.6374 8.4225 6.0868 19 1 5.3768 9.0719 4.5274 20 1 3.0999 9.8348 4.1898 21 6 3.6314 5.9188 0.1700 22 1 2.8308 5.1848 0.0784 23 6 3.1488 7.2723 -0.3554 24 6 4.8489 5.4588 -0.6381 25 6 3.9476 -0.5327 0.0042 26 6 5.3335 -1.1250 0.0081 27 16 2.5065 -1.4427 0.0085 28 1 -0.3633 -1.0277 0.0056 29 1 -0.3633 0.5186 0.8871 30 1 -0.3634 0.5088 -0.8928 31 1 1.8614 2.0940 -0.0011 32 1 3.4367 3.3943 -0.0175 33 1 6.2826 3.5457 1.8463 34 1 6.6153 5.2407 1.4142 35 1 4.9950 5.1994 3.2394 36 1 3.9470 4.0841 2.3258 37 1 2.8727 5.3356 3.6659 38 1 3.9523 8.0037 -0.2675 39 1 2.8602 7.1741 -1.4019 40 1 2.2905 7.6038 0.2290 41 1 4.5499 5.2661 -1.6685 42 1 5.6126 6.2363 -0.6198 43 1 5.6669 -1.2620 1.0367 44 1 5.3180 -2.0889 -0.5004 45 1 6.0175 -0.4522 -0.5091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947515707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:27 Heat of formation + Delta-G solvation = 0.277315 kcal Electronic energy + Delta-G solvation = -25933.938379 eV Core-core repulsion = 22463.901593 eV Total energy + Delta-G solvation = -3470.036786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.06976 -38.21629 -36.91006 -34.52778 -33.05043 -32.53204 -31.44207 -29.75425 -29.03606 -26.48595 -25.53736 -24.84343 -23.69777 -21.89473 -21.02303 -20.77625 -19.27467 -18.61564 -17.21457 -16.98493 -16.48556 -15.39570 -15.05610 -14.87636 -14.43758 -14.21575 -13.93047 -13.76594 -13.52573 -13.40921 -13.32174 -13.19953 -13.01361 -12.91916 -12.48722 -12.08082 -11.95012 -11.64147 -11.63084 -11.51480 -11.25675 -11.04261 -10.94275 -10.79416 -10.61995 -10.31832 -10.11674 -9.95589 -9.84614 -9.51258 -9.11894 -8.76020 -8.67338 -8.39494 -8.36443 -6.85567 -6.03014 -3.22688 0.75991 1.38074 1.79351 1.96917 3.48875 3.51449 3.53180 3.60012 3.70510 4.53264 4.58590 4.80902 4.99055 5.11591 5.15174 5.22626 5.34935 5.35410 5.36501 5.50162 5.54133 5.60641 5.61254 5.70117 5.87485 5.88908 5.95857 6.01250 6.11629 6.20739 6.22039 6.26685 6.28501 6.38604 6.47060 6.50717 6.63358 6.84415 6.93617 6.97486 7.10374 7.23005 7.82330 8.04469 8.49011 8.59678 9.12814 9.86774 10.31187 11.23868 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015782 B = 0.003634 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.779691 B = 7704.192659 C = 8118.189495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.200 4.200 3 C -0.109 4.109 4 C -0.165 4.165 5 C 0.578 3.422 6 O -0.546 6.546 7 N -0.707 5.707 8 C 0.155 3.845 9 H 0.075 0.925 10 C -0.148 4.148 11 C 0.156 3.844 12 N -0.593 5.593 13 C -0.347 4.347 14 H 0.060 0.940 15 C -0.023 4.023 16 N -0.917 5.917 17 Si 1.062 2.938 18 H -0.286 1.286 19 H -0.294 1.294 20 H -0.293 1.293 21 C 0.171 3.829 22 H 0.016 0.984 23 C -0.134 4.134 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.093 4.093 27 S 0.165 5.835 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.399 0.601 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.015 0.985 37 H 0.268 0.732 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -12.927 -11.160 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.317 4.317 3 C -0.137 4.137 4 C -0.181 4.181 5 C 0.364 3.636 6 O -0.426 6.426 7 N -0.358 5.358 8 C 0.051 3.949 9 H 0.093 0.907 10 C -0.188 4.188 11 C 0.030 3.970 12 N -0.318 5.318 13 C -0.476 4.476 14 H 0.078 0.922 15 C -0.225 4.225 16 N -0.557 5.557 17 Si 0.892 3.108 18 H -0.212 1.212 19 H -0.221 1.221 20 H -0.221 1.221 21 C 0.064 3.936 22 H 0.034 0.966 23 C -0.192 4.192 24 C -0.178 4.178 25 C -0.264 4.264 26 C -0.151 4.151 27 S 0.431 5.569 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.164 0.836 32 H 0.236 0.764 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.007 -14.026 -9.578 17.102 hybrid contribution -0.199 1.149 -1.512 1.909 sum -2.206 -12.878 -11.090 17.137 Atomic orbital electron populations 1.20334 0.87507 1.02781 1.03334 1.24224 1.00271 0.95881 1.11311 1.21129 0.91125 0.99519 1.01969 1.20158 0.93444 0.93082 1.11459 1.17528 0.87638 0.82226 0.76166 1.90687 1.18753 1.81873 1.51268 1.46018 1.10799 1.05115 1.73916 1.20882 0.89933 0.86635 0.97441 0.90654 1.22361 1.00424 1.00461 0.95537 1.20777 0.90957 0.88951 0.96305 1.44186 1.67923 1.13049 1.06607 1.19938 1.49132 0.85495 0.93072 0.92206 1.25813 0.97474 1.03520 0.95740 1.70784 1.39379 1.06274 1.39223 0.83559 0.76138 0.74674 0.76388 1.21196 1.22126 1.22059 1.20358 0.92129 0.95053 0.86073 0.96622 1.21776 1.01816 0.97571 0.97992 1.22361 1.00789 0.96394 0.98306 1.24429 1.01625 0.96600 1.03728 1.20617 0.90469 1.00468 1.03569 1.82889 0.93668 1.08816 1.71531 0.91516 0.90295 0.90503 0.83585 0.76442 0.92539 0.91493 0.90531 0.96665 0.92090 0.92618 0.94370 0.91966 0.92498 0.90542 0.90326 0.91878 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.35 36.01 0.37 -0.30 16 2 C -0.20 -2.25 6.44 -36.18 -0.23 -2.48 16 3 C -0.11 -1.41 9.75 -39.02 -0.38 -1.79 16 4 C -0.17 -2.45 5.98 -104.63 -0.63 -3.08 16 5 C 0.58 9.85 7.75 -12.63 -0.10 9.75 16 6 O -0.55 -10.41 13.72 5.25 0.07 -10.34 16 7 N -0.71 -11.66 4.25 -54.91 -0.23 -11.90 16 8 C 0.16 2.70 2.78 -67.89 -0.19 2.51 16 9 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 10 C -0.15 -2.93 5.75 -26.83 -0.15 -3.08 16 11 C 0.16 3.61 4.41 -3.93 -0.02 3.60 16 12 N -0.59 -13.99 2.84 -165.04 -0.47 -14.45 16 13 C -0.35 -9.20 8.50 -15.06 -0.13 -9.33 16 14 H 0.06 1.58 6.27 -52.49 -0.33 1.25 16 15 C -0.02 -0.64 4.70 -17.43 -0.08 -0.73 16 16 N -0.92 -27.02 12.46 55.49 0.69 -26.33 16 17 Si 1.06 24.95 29.98 -169.99 -5.10 19.85 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.17 3.31 3.20 -67.60 -0.22 3.09 16 22 H 0.02 0.31 6.65 -51.93 -0.35 -0.03 16 23 C -0.13 -2.44 7.94 37.16 0.30 -2.15 16 24 C -0.14 -2.32 5.07 -26.61 -0.13 -2.45 16 25 C -0.14 -1.91 6.34 -35.10 -0.22 -2.13 16 26 C -0.09 -1.13 9.60 36.01 0.35 -0.78 16 27 S 0.17 1.75 22.94 -107.50 -2.47 -0.72 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.15 1.77 7.10 -52.48 -0.37 1.40 16 32 H 0.40 6.27 5.41 -40.82 -0.22 6.05 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 2.03 6.39 -51.93 -0.33 1.70 16 36 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 37 H 0.27 7.97 6.68 -40.82 -0.27 7.69 16 38 H 0.05 1.04 7.44 -51.92 -0.39 0.66 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 1.48 5.94 -51.93 -0.31 1.17 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -30.70 362.01 -10.28 -40.98 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.77 Total: 6.81 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.47 Total: -9.36 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.01 Total: -52.68 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.10 Total: 19.85 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.47 Total: -0.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.70 -10.28 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947515707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.255 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds