Wall clock time and date at job start Tue Mar 31 2020 13:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32763 * 124.71204 * 2 1 4 4 C 1.44425 * 113.08542 * 180.14870 * 3 2 1 5 5 C 1.47190 * 123.46199 * 179.81402 * 4 3 2 6 6 O 1.21636 * 119.99705 * 179.70394 * 5 4 3 7 7 N 1.34772 * 119.99966 * 359.69405 * 5 4 3 8 8 C 1.46502 * 119.99877 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46228 * 35.02821 * 8 7 5 10 10 C 1.53038 * 109.45900 * 275.07070 * 8 7 5 11 11 C 1.52765 * 109.38424 * 301.21763 * 10 8 7 12 12 N 1.46924 * 109.00726 * 305.59230 * 11 10 8 13 13 C 1.36940 * 120.62840 * 233.58467 * 12 11 10 14 14 H 1.07998 * 119.99935 * 150.69862 * 13 12 11 15 15 C 1.38807 * 119.99862 * 330.69507 * 13 12 11 16 16 N 1.31628 * 120.00356 * 336.07655 * 15 13 12 17 17 Si 1.86800 * 120.00149 * 156.07948 * 15 13 12 18 18 H 1.48504 * 109.47268 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.46887 * 299.99602 * 17 15 13 20 20 H 1.48493 * 109.47418 * 59.99607 * 17 15 13 21 21 C 1.46924 * 118.74146 * 53.30696 * 12 11 10 22 22 H 1.08999 * 109.58588 * 66.57335 * 21 12 11 23 23 C 1.53001 * 109.58908 * 186.85518 * 21 12 11 24 24 C 1.53043 * 109.46228 * 155.00206 * 8 7 5 25 25 C 1.36010 * 113.07451 * 359.53283 * 4 3 2 26 26 C 1.50708 * 124.58941 * 180.24475 * 25 4 3 27 27 S 1.70443 * 110.81977 * 0.25568 * 25 4 3 28 28 H 1.09004 * 109.46889 * 180.31168 * 1 2 3 29 29 H 1.08997 * 109.47126 * 300.31125 * 1 2 3 30 30 H 1.08996 * 109.47334 * 60.31919 * 1 2 3 31 31 H 1.08010 * 123.45942 * 359.93110 * 3 2 1 32 32 H 0.96998 * 120.00428 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.49855 * 61.29642 * 10 8 7 34 34 H 1.09002 * 109.49456 * 181.39612 * 10 8 7 35 35 H 1.08997 * 109.50761 * 185.70928 * 11 10 8 36 36 H 1.08995 * 109.43030 * 65.42464 * 11 10 8 37 37 H 0.97004 * 119.99318 * 354.30837 * 16 15 13 38 38 H 1.09007 * 109.47126 * 59.99793 * 23 21 12 39 39 H 1.08998 * 109.47477 * 179.97438 * 23 21 12 40 40 H 1.08996 * 109.47286 * 300.00173 * 23 21 12 41 41 H 1.09005 * 109.49682 * 298.70608 * 24 8 7 42 42 H 1.08995 * 109.50286 * 178.60701 * 24 8 7 43 43 H 1.08995 * 109.46367 * 90.00922 * 26 25 4 44 44 H 1.08993 * 109.46779 * 210.00904 * 26 25 4 45 45 H 1.08998 * 109.46978 * 330.00881 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0913 0.0000 4 6 3.6777 0.8003 -0.0034 5 6 4.7201 1.8395 -0.0081 6 8 5.8945 1.5228 -0.0054 7 7 4.3732 3.1418 -0.0156 8 6 5.4108 4.1761 -0.0208 9 1 6.2624 3.8332 -0.6083 10 6 5.8611 4.4537 1.4152 11 6 4.6602 4.9043 2.2450 12 7 4.0216 6.0486 1.5805 13 6 3.7996 7.2158 2.2612 14 1 3.7894 8.1566 1.7310 15 6 3.5876 7.1898 3.6328 16 7 3.1357 6.0957 4.2083 17 14 3.9435 8.7076 4.6619 18 1 3.6374 8.4225 6.0868 19 1 5.3768 9.0719 4.5274 20 1 3.0999 9.8348 4.1898 21 6 3.6314 5.9188 0.1700 22 1 2.8308 5.1848 0.0784 23 6 3.1488 7.2723 -0.3554 24 6 4.8489 5.4588 -0.6381 25 6 3.9476 -0.5327 0.0042 26 6 5.3335 -1.1250 0.0081 27 16 2.5065 -1.4427 0.0085 28 1 -0.3633 -1.0277 0.0056 29 1 -0.3633 0.5186 0.8871 30 1 -0.3634 0.5088 -0.8928 31 1 1.8614 2.0940 -0.0011 32 1 3.4367 3.3943 -0.0175 33 1 6.2826 3.5457 1.8463 34 1 6.6153 5.2407 1.4142 35 1 4.9950 5.1994 3.2394 36 1 3.9470 4.0841 2.3258 37 1 2.8727 5.3356 3.6659 38 1 3.9523 8.0037 -0.2675 39 1 2.8602 7.1741 -1.4019 40 1 2.2905 7.6038 0.2290 41 1 4.5499 5.2661 -1.6685 42 1 5.6126 6.2363 -0.6198 43 1 5.6669 -1.2620 1.0367 44 1 5.3180 -2.0889 -0.5004 45 1 6.0175 -0.4522 -0.5091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947515707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:26 Heat of formation + Delta-G solvation = -16.655556 kcal Electronic energy + Delta-G solvation = -25934.672644 eV Core-core repulsion = 22463.901593 eV Total energy + Delta-G solvation = -3470.771051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40777 -39.67145 -38.07260 -36.15058 -34.30695 -33.92761 -33.03004 -31.37662 -30.09269 -28.08984 -26.90091 -26.31151 -24.83467 -23.63362 -22.49150 -22.06327 -20.53253 -20.09564 -18.88092 -18.21374 -17.63024 -16.89007 -16.56201 -16.28564 -15.96194 -15.54843 -15.39718 -15.18601 -14.90402 -14.68829 -14.59194 -14.25075 -14.16111 -14.06904 -13.86208 -13.50973 -13.19667 -12.91134 -12.77132 -12.71915 -12.60864 -12.51891 -12.48754 -12.34426 -11.96955 -11.92539 -11.91168 -11.76467 -11.50613 -10.97302 -10.80559 -10.41737 -10.13497 -9.58752 -9.38176 -8.85225 -8.15056 -5.33154 -0.24883 0.47913 0.85023 0.92173 1.58804 1.66244 1.83706 2.24212 2.34289 2.67967 3.26571 3.48786 3.61945 3.74497 3.85935 3.96149 4.05177 4.12587 4.21972 4.27722 4.45493 4.48786 4.52682 4.60849 4.61679 4.63433 4.74969 4.80128 4.84175 4.88942 4.93723 5.00512 5.03198 5.04976 5.13238 5.19001 5.21594 5.25225 5.35039 5.43776 5.48232 5.57174 5.97109 6.45920 6.51557 7.12047 7.18377 7.84903 8.30285 9.08690 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015782 B = 0.003634 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.779691 B = 7704.192659 C = 8118.189495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.200 4.200 3 C -0.129 4.129 4 C -0.193 4.193 5 C 0.574 3.426 6 O -0.573 6.573 7 N -0.705 5.705 8 C 0.161 3.839 9 H 0.082 0.918 10 C -0.136 4.136 11 C 0.170 3.830 12 N -0.607 5.607 13 C -0.340 4.340 14 H 0.063 0.937 15 C -0.079 4.079 16 N -0.949 5.949 17 Si 1.108 2.892 18 H -0.298 1.298 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.162 3.838 22 H 0.022 0.978 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.162 4.162 26 C -0.091 4.091 27 S 0.229 5.771 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.403 0.597 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.001 0.999 37 H 0.253 0.747 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -13.548 -13.124 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.317 4.317 3 C -0.157 4.157 4 C -0.210 4.210 5 C 0.362 3.638 6 O -0.455 6.455 7 N -0.356 5.356 8 C 0.057 3.943 9 H 0.100 0.900 10 C -0.177 4.177 11 C 0.044 3.956 12 N -0.332 5.332 13 C -0.470 4.470 14 H 0.080 0.920 15 C -0.275 4.275 16 N -0.592 5.592 17 Si 0.934 3.066 18 H -0.224 1.224 19 H -0.210 1.210 20 H -0.200 1.200 21 C 0.057 3.943 22 H 0.039 0.961 23 C -0.184 4.184 24 C -0.164 4.164 25 C -0.282 4.282 26 C -0.150 4.150 27 S 0.496 5.504 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.165 0.835 32 H 0.240 0.760 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.907 -14.642 -11.590 18.899 hybrid contribution 0.035 1.231 -0.957 1.560 sum -2.872 -13.411 -12.548 18.589 Atomic orbital electron populations 1.20463 0.85384 1.04229 1.04004 1.24679 1.01829 0.95857 1.09368 1.21141 0.90504 1.00342 1.03693 1.20141 0.93758 0.93125 1.13932 1.17937 0.87891 0.82651 0.75359 1.90667 1.19977 1.82290 1.52585 1.45959 1.10726 1.04983 1.73883 1.20766 0.90601 0.87484 0.95483 0.90040 1.22206 0.98757 0.99801 0.96897 1.20471 0.91701 0.88437 0.94971 1.44384 1.68324 1.12279 1.08219 1.20200 1.46848 0.86647 0.93291 0.91956 1.27012 0.97780 1.05119 0.97553 1.70898 1.42372 1.06852 1.39060 0.82930 0.76707 0.72562 0.74404 1.22444 1.21046 1.19985 1.20634 0.93547 0.96248 0.83903 0.96062 1.21706 1.00491 0.96303 0.99929 1.22230 0.99271 0.95562 0.99339 1.24769 1.03468 0.96854 1.03122 1.20592 0.89645 1.01229 1.03489 1.82631 0.91171 1.07070 1.69558 0.89677 0.90195 0.89208 0.83491 0.75987 0.93360 0.91634 0.94635 0.98108 0.93749 0.93325 0.90438 0.94280 0.89173 0.90548 0.90512 0.89090 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.35 71.24 0.74 -0.42 16 2 C -0.20 -4.11 6.44 24.51 0.16 -3.95 16 3 C -0.13 -3.25 9.75 22.67 0.22 -3.02 16 4 C -0.19 -5.69 5.98 -19.87 -0.12 -5.80 16 5 C 0.57 19.74 7.75 86.60 0.67 20.41 16 6 O -0.57 -22.27 13.72 -4.14 -0.06 -22.32 16 7 N -0.70 -23.11 4.25 -445.90 -1.89 -25.01 16 8 C 0.16 5.50 2.78 45.02 0.13 5.62 16 9 H 0.08 2.75 7.58 -2.39 -0.02 2.73 16 10 C -0.14 -5.51 5.75 30.53 0.18 -5.34 16 11 C 0.17 8.18 4.41 86.22 0.38 8.56 16 12 N -0.61 -28.90 2.84 -676.06 -1.92 -30.82 16 13 C -0.34 -18.17 8.50 84.03 0.71 -17.45 16 14 H 0.06 3.26 6.27 -2.91 -0.02 3.25 16 15 C -0.08 -4.42 4.70 84.86 0.40 -4.02 16 16 N -0.95 -57.93 12.46 21.65 0.27 -57.66 16 17 Si 1.11 50.99 29.98 68.60 2.06 53.05 16 18 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 C 0.16 6.08 3.20 44.98 0.14 6.22 16 22 H 0.02 0.80 6.65 -2.39 -0.02 0.79 16 23 C -0.13 -4.36 7.94 71.98 0.57 -3.79 16 24 C -0.12 -3.90 5.07 30.67 0.16 -3.74 16 25 C -0.16 -4.15 6.34 25.17 0.16 -3.99 16 26 C -0.09 -2.16 9.60 71.24 0.68 -1.48 16 27 S 0.23 4.31 22.94 -56.49 -1.30 3.01 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.15 3.52 7.10 -2.91 -0.02 3.50 16 32 H 0.40 12.54 5.41 -92.71 -0.50 12.03 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.04 1.98 6.39 -2.39 -0.02 1.96 16 36 H 0.00 0.05 7.44 -2.39 -0.02 0.03 16 37 H 0.25 15.71 6.68 -92.71 -0.62 15.09 16 38 H 0.05 1.73 7.44 -2.38 -0.02 1.71 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.50 7.62 -2.39 -0.02 1.49 16 41 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 2.36 5.94 -2.39 -0.01 2.35 16 Total: -1.00 -68.43 362.01 2.99 -65.45 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.65 Total: 26.50 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.18 Total: -12.20 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -3.54 Total: -113.49 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.06 Total: 53.05 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.30 Total: 3.01 kcal Total: -68.43 2.99 -65.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947515707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.793 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds