Wall clock time and date at job start Tue Mar 31 2020 13:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32768 * 124.71385 * 2 1 4 4 C 1.44423 * 113.08363 * 179.97438 * 3 2 1 5 5 C 1.47198 * 123.46046 * 179.97438 * 4 3 2 6 6 O 1.21634 * 119.99822 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99655 * 0.03074 * 5 4 3 8 8 C 1.46498 * 119.99900 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.49719 * 34.93544 * 8 7 5 10 10 C 1.53103 * 109.49039 * 274.85852 * 8 7 5 11 11 C 1.53041 * 109.50609 * 178.69765 * 10 8 7 12 12 C 1.53194 * 109.33736 * 61.34492 * 11 10 8 13 13 N 1.46925 * 108.77685 * 305.34841 * 12 11 10 14 14 C 1.36934 * 120.63700 * 233.63135 * 13 12 11 15 15 H 1.07992 * 120.00406 * 150.15183 * 14 13 12 16 16 C 1.38819 * 119.99665 * 330.15714 * 14 13 12 17 17 N 1.31619 * 119.99679 * 344.49249 * 16 14 13 18 18 Si 1.86797 * 120.00224 * 164.49390 * 16 14 13 19 19 H 1.48503 * 109.47079 * 89.99816 * 18 16 14 20 20 H 1.48498 * 109.47215 * 210.00127 * 18 16 14 21 21 H 1.48499 * 109.46927 * 330.00030 * 18 16 14 22 22 C 1.46929 * 118.73554 * 53.61240 * 13 12 11 23 23 H 1.09000 * 109.59066 * 66.17778 * 22 13 12 24 24 C 1.53000 * 109.58621 * 186.60600 * 22 13 12 25 25 C 1.36002 * 113.07882 * 0.24841 * 4 3 2 26 26 C 1.50706 * 124.59230 * 179.73378 * 25 4 3 27 27 S 1.70447 * 110.81822 * 359.62069 * 25 4 3 28 28 H 1.08999 * 109.46999 * 90.00393 * 1 2 3 29 29 H 1.09000 * 109.47292 * 209.99767 * 1 2 3 30 30 H 1.09000 * 109.47096 * 330.00345 * 1 2 3 31 31 H 1.07997 * 123.45585 * 359.93750 * 3 2 1 32 32 H 0.96996 * 120.00358 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.50714 * 58.67136 * 10 8 7 34 34 H 1.09000 * 109.44878 * 298.69031 * 10 8 7 35 35 H 1.09004 * 109.49977 * 301.38330 * 11 10 8 36 36 H 1.09003 * 109.49838 * 181.30964 * 11 10 8 37 37 H 1.09001 * 109.58740 * 65.13842 * 12 11 10 38 38 H 1.08998 * 109.58787 * 185.56217 * 12 11 10 39 39 H 0.97009 * 119.99606 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.47541 * 59.99334 * 24 22 13 41 41 H 1.08998 * 109.47120 * 179.97438 * 24 22 13 42 42 H 1.09005 * 109.46954 * 299.99334 * 24 22 13 43 43 H 1.09005 * 109.46974 * 89.99698 * 26 25 4 44 44 H 1.08994 * 109.47503 * 209.99626 * 26 25 4 45 45 H 1.08995 * 109.47132 * 330.00012 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 0.0006 5 6 4.7202 1.8394 0.0002 6 8 5.8946 1.5227 0.0002 7 7 4.3733 3.1418 -0.0002 8 6 5.4108 4.1761 -0.0001 9 1 6.2634 3.8363 -0.5881 10 6 5.8584 4.4504 1.4381 11 6 6.9651 5.5075 1.4361 12 6 6.4210 6.8104 0.8416 13 7 5.8569 6.5257 -0.4848 14 6 6.2628 7.2360 -1.5829 15 1 6.2559 6.7729 -2.5585 16 6 6.6832 8.5515 -1.4420 17 7 6.4127 9.2140 -0.3373 18 14 7.6329 9.3813 -2.8200 19 1 6.6814 10.0458 -3.7465 20 1 8.5542 10.3945 -2.2459 21 1 8.4179 8.3631 -3.5631 22 6 4.8492 5.4638 -0.6108 23 1 3.9430 5.7551 -0.0797 24 6 4.5291 5.2332 -2.0890 25 6 3.9476 -0.5327 -0.0044 26 6 5.3334 -1.1250 -0.0108 27 16 2.5064 -1.4427 0.0007 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8615 2.0939 -0.0010 32 1 3.4368 3.3943 -0.0006 33 1 6.2362 3.5301 1.8836 34 1 5.0106 4.8135 2.0191 35 1 7.8034 5.1555 0.8347 36 1 7.2998 5.6858 2.4580 37 1 5.6430 7.2115 1.4911 38 1 7.2300 7.5346 0.7468 39 1 6.7062 10.1334 -0.2390 40 1 5.4363 4.9361 -2.6153 41 1 3.7818 4.4450 -2.1803 42 1 4.1414 6.1541 -2.5248 43 1 5.6709 -1.2709 1.0154 44 1 5.3161 -2.0846 -0.5274 45 1 6.0155 -0.4479 -0.5248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993566772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:18 Heat of formation + Delta-G solvation = 0.810120 kcal Electronic energy + Delta-G solvation = -25501.334844 eV Core-core repulsion = 22031.321162 eV Total energy + Delta-G solvation = -3470.013682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.99462 -38.05555 -36.90745 -34.38163 -33.10618 -32.55794 -31.67340 -29.82410 -28.92715 -26.41998 -25.40945 -24.93228 -23.77489 -21.85111 -20.69380 -20.62046 -19.55790 -18.86159 -17.30553 -16.57215 -16.33721 -15.51344 -15.05103 -14.84666 -14.42460 -14.12771 -13.84085 -13.74817 -13.62850 -13.43982 -13.37214 -13.16971 -13.04811 -12.74152 -12.52936 -12.16354 -11.76518 -11.70411 -11.65217 -11.51641 -11.11797 -11.08161 -10.91894 -10.72809 -10.55703 -10.27918 -10.10945 -10.03399 -9.82740 -9.51592 -9.31883 -8.79069 -8.72985 -8.49593 -8.39584 -6.65755 -5.79340 -3.23710 0.68376 1.29278 1.72175 1.88785 3.37271 3.44570 3.46553 3.51235 3.54770 4.43963 4.50103 4.73748 4.91676 5.05805 5.16577 5.22840 5.31175 5.40030 5.43802 5.52641 5.54743 5.57761 5.64296 5.80850 5.81215 5.88115 5.99345 6.08953 6.17795 6.19884 6.23649 6.36372 6.43354 6.55469 6.66209 6.75362 6.77267 6.88133 7.00500 7.09413 7.40671 7.66906 7.81192 7.82656 8.43605 8.50431 9.20611 9.83285 10.40146 11.29427 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.002972 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.523822 B = 9418.890311 C = 9728.949157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.203 4.203 3 C -0.109 4.109 4 C -0.166 4.166 5 C 0.576 3.424 6 O -0.540 6.540 7 N -0.711 5.711 8 C 0.132 3.868 9 H 0.087 0.913 10 C -0.116 4.116 11 C -0.140 4.140 12 C 0.170 3.830 13 N -0.582 5.582 14 C -0.252 4.252 15 H 0.070 0.930 16 C 0.005 3.995 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.168 3.832 23 H 0.027 0.973 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.094 4.094 27 S 0.164 5.836 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.395 0.605 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.019 0.981 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 -19.560 2.421 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.320 4.320 3 C -0.138 4.138 4 C -0.183 4.183 5 C 0.362 3.638 6 O -0.419 6.419 7 N -0.361 5.361 8 C 0.026 3.974 9 H 0.105 0.895 10 C -0.155 4.155 11 C -0.180 4.180 12 C 0.045 3.955 13 N -0.305 5.305 14 C -0.382 4.382 15 H 0.087 0.913 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.204 1.204 22 C 0.060 3.940 23 H 0.044 0.956 24 C -0.194 4.194 25 C -0.262 4.262 26 C -0.153 4.153 27 S 0.430 5.570 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.229 0.771 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.142 -21.093 2.445 23.532 hybrid contribution 0.301 2.229 -0.543 2.314 sum -9.841 -18.864 1.902 21.361 Atomic orbital electron populations 1.20333 0.87535 1.03223 1.02865 1.24228 1.00255 0.96010 1.11467 1.21144 0.91103 0.99401 1.02123 1.20212 0.93477 0.93157 1.11413 1.17526 0.87639 0.82201 0.76439 1.90717 1.18750 1.81741 1.50727 1.46002 1.10538 1.05379 1.74161 1.21810 0.90666 0.87807 0.97100 0.89535 1.21769 0.98938 0.98651 0.96140 1.22185 0.97718 0.98238 0.99847 1.20821 0.97550 0.92388 0.84750 1.44028 1.43280 1.37821 1.05379 1.19149 1.38464 0.92225 0.88360 0.91263 1.25084 1.01168 0.95883 0.97262 1.70031 1.47700 1.09946 1.26911 0.86323 0.79849 0.79149 0.81613 1.21409 1.21582 1.20425 1.20561 0.91659 0.87464 0.94326 0.95560 1.21816 1.00392 1.00537 0.96641 1.24455 1.01625 0.96631 1.03508 1.20633 0.90464 1.00656 1.03506 1.82934 0.93718 1.08746 1.71586 0.90696 0.91365 0.90380 0.83516 0.77136 0.93171 0.92830 0.92511 0.93036 0.96308 0.89496 0.93665 0.92689 0.94331 0.91742 0.90361 0.91812 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.35 36.01 0.37 -0.14 16 2 C -0.20 -1.89 6.44 -36.18 -0.23 -2.13 16 3 C -0.11 -1.17 9.75 -39.02 -0.38 -1.55 16 4 C -0.17 -2.21 5.98 -104.63 -0.63 -2.83 16 5 C 0.58 9.22 7.76 -12.62 -0.10 9.13 16 6 O -0.54 -10.21 13.72 5.25 0.07 -10.14 16 7 N -0.71 -10.85 4.56 -54.80 -0.25 -11.10 16 8 C 0.13 2.42 2.00 -67.78 -0.14 2.29 16 9 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 10 C -0.12 -2.13 5.47 -26.66 -0.15 -2.28 16 11 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 12 C 0.17 4.04 5.28 -3.71 -0.02 4.02 16 13 N -0.58 -14.21 2.99 -164.77 -0.49 -14.70 16 14 C -0.25 -6.73 8.57 -15.06 -0.13 -6.86 16 15 H 0.07 1.81 6.24 -52.49 -0.33 1.48 16 16 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 17 N -0.90 -25.76 11.23 55.49 0.62 -25.13 16 18 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.17 3.39 3.03 -67.60 -0.21 3.19 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 C -0.14 -2.56 7.83 37.16 0.29 -2.26 16 25 C -0.14 -1.72 6.34 -35.11 -0.22 -1.94 16 26 C -0.09 -1.08 9.60 36.01 0.35 -0.73 16 27 S 0.16 1.52 22.94 -107.50 -2.47 -0.94 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.15 1.31 7.10 -52.49 -0.37 0.94 16 32 H 0.39 5.04 7.15 -40.82 -0.29 4.75 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 40 H 0.05 1.09 7.44 -51.93 -0.39 0.70 16 41 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 42 H 0.06 1.28 7.63 -51.93 -0.40 0.89 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.11 1.48 5.94 -51.93 -0.31 1.17 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -30.59 366.65 -10.44 -41.02 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.99 Total: 3.99 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.43 Total: -5.01 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.12 Total: -50.94 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.47 Total: -0.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.59 -10.44 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993566772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.831 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds