Wall clock time and date at job start Tue Mar 31 2020 13:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32768 * 124.71385 * 2 1 4 4 C 1.44423 * 113.08363 * 179.97438 * 3 2 1 5 5 C 1.47198 * 123.46046 * 179.97438 * 4 3 2 6 6 O 1.21634 * 119.99822 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99655 * 0.03074 * 5 4 3 8 8 C 1.46498 * 119.99900 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.49719 * 34.93544 * 8 7 5 10 10 C 1.53103 * 109.49039 * 274.85852 * 8 7 5 11 11 C 1.53041 * 109.50609 * 178.69765 * 10 8 7 12 12 C 1.53194 * 109.33736 * 61.34492 * 11 10 8 13 13 N 1.46925 * 108.77685 * 305.34841 * 12 11 10 14 14 C 1.36934 * 120.63700 * 233.63135 * 13 12 11 15 15 H 1.07992 * 120.00406 * 150.15183 * 14 13 12 16 16 C 1.38819 * 119.99665 * 330.15714 * 14 13 12 17 17 N 1.31619 * 119.99679 * 344.49249 * 16 14 13 18 18 Si 1.86797 * 120.00224 * 164.49390 * 16 14 13 19 19 H 1.48503 * 109.47079 * 89.99816 * 18 16 14 20 20 H 1.48498 * 109.47215 * 210.00127 * 18 16 14 21 21 H 1.48499 * 109.46927 * 330.00030 * 18 16 14 22 22 C 1.46929 * 118.73554 * 53.61240 * 13 12 11 23 23 H 1.09000 * 109.59066 * 66.17778 * 22 13 12 24 24 C 1.53000 * 109.58621 * 186.60600 * 22 13 12 25 25 C 1.36002 * 113.07882 * 0.24841 * 4 3 2 26 26 C 1.50706 * 124.59230 * 179.73378 * 25 4 3 27 27 S 1.70447 * 110.81822 * 359.62069 * 25 4 3 28 28 H 1.08999 * 109.46999 * 90.00393 * 1 2 3 29 29 H 1.09000 * 109.47292 * 209.99767 * 1 2 3 30 30 H 1.09000 * 109.47096 * 330.00345 * 1 2 3 31 31 H 1.07997 * 123.45585 * 359.93750 * 3 2 1 32 32 H 0.96996 * 120.00358 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.50714 * 58.67136 * 10 8 7 34 34 H 1.09000 * 109.44878 * 298.69031 * 10 8 7 35 35 H 1.09004 * 109.49977 * 301.38330 * 11 10 8 36 36 H 1.09003 * 109.49838 * 181.30964 * 11 10 8 37 37 H 1.09001 * 109.58740 * 65.13842 * 12 11 10 38 38 H 1.08998 * 109.58787 * 185.56217 * 12 11 10 39 39 H 0.97009 * 119.99606 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.47541 * 59.99334 * 24 22 13 41 41 H 1.08998 * 109.47120 * 179.97438 * 24 22 13 42 42 H 1.09005 * 109.46954 * 299.99334 * 24 22 13 43 43 H 1.09005 * 109.46974 * 89.99698 * 26 25 4 44 44 H 1.08994 * 109.47503 * 209.99626 * 26 25 4 45 45 H 1.08995 * 109.47132 * 330.00012 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 0.0006 5 6 4.7202 1.8394 0.0002 6 8 5.8946 1.5227 0.0002 7 7 4.3733 3.1418 -0.0002 8 6 5.4108 4.1761 -0.0001 9 1 6.2634 3.8363 -0.5881 10 6 5.8584 4.4504 1.4381 11 6 6.9651 5.5075 1.4361 12 6 6.4210 6.8104 0.8416 13 7 5.8569 6.5257 -0.4848 14 6 6.2628 7.2360 -1.5829 15 1 6.2559 6.7729 -2.5585 16 6 6.6832 8.5515 -1.4420 17 7 6.4127 9.2140 -0.3373 18 14 7.6329 9.3813 -2.8200 19 1 6.6814 10.0458 -3.7465 20 1 8.5542 10.3945 -2.2459 21 1 8.4179 8.3631 -3.5631 22 6 4.8492 5.4638 -0.6108 23 1 3.9430 5.7551 -0.0797 24 6 4.5291 5.2332 -2.0890 25 6 3.9476 -0.5327 -0.0044 26 6 5.3334 -1.1250 -0.0108 27 16 2.5064 -1.4427 0.0007 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8615 2.0939 -0.0010 32 1 3.4368 3.3943 -0.0006 33 1 6.2362 3.5301 1.8836 34 1 5.0106 4.8135 2.0191 35 1 7.8034 5.1555 0.8347 36 1 7.2998 5.6858 2.4580 37 1 5.6430 7.2115 1.4911 38 1 7.2300 7.5346 0.7468 39 1 6.7062 10.1334 -0.2390 40 1 5.4363 4.9361 -2.6153 41 1 3.7818 4.4450 -2.1803 42 1 4.1414 6.1541 -2.5248 43 1 5.6709 -1.2709 1.0154 44 1 5.3161 -2.0846 -0.5274 45 1 6.0155 -0.4479 -0.5248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993566772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:17 Heat of formation + Delta-G solvation = -16.338393 kcal Electronic energy + Delta-G solvation = -25502.078459 eV Core-core repulsion = 22031.321162 eV Total energy + Delta-G solvation = -3470.757298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25529 -39.50954 -37.99571 -35.95435 -34.28440 -33.90049 -33.41589 -31.25578 -30.02298 -27.98639 -26.94769 -26.23577 -24.87867 -23.36454 -22.32442 -21.75873 -21.07517 -20.06367 -18.36755 -18.06339 -17.67196 -17.12565 -16.50721 -16.16929 -15.72572 -15.58819 -15.33544 -15.03426 -14.81926 -14.64014 -14.43786 -14.30334 -14.12579 -14.07180 -13.80533 -13.35331 -13.25056 -12.86731 -12.80194 -12.73887 -12.55822 -12.51562 -12.45944 -12.37813 -12.03006 -11.83863 -11.82622 -11.77860 -11.61330 -11.17742 -10.72918 -10.52963 -10.04557 -9.53805 -9.33081 -8.64642 -7.85941 -5.32148 -0.19669 0.52119 0.92690 0.99652 1.46151 1.48778 1.57482 2.24350 2.37110 2.55220 3.29893 3.61076 3.68443 3.81736 3.90947 4.02610 4.17097 4.20721 4.26855 4.35540 4.49518 4.57359 4.61086 4.64254 4.66609 4.75499 4.81793 4.87724 4.90951 4.92241 5.02687 5.10109 5.12458 5.17325 5.20335 5.27373 5.31583 5.43004 5.43875 5.50339 5.60111 5.70453 5.75892 6.41900 6.60997 7.16208 7.27900 7.86210 8.38409 9.21172 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.002972 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.523822 B = 9418.890311 C = 9728.949157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.200 4.200 3 C -0.123 4.123 4 C -0.188 4.188 5 C 0.574 3.426 6 O -0.576 6.576 7 N -0.702 5.702 8 C 0.149 3.851 9 H 0.057 0.943 10 C -0.108 4.108 11 C -0.129 4.129 12 C 0.177 3.823 13 N -0.600 5.600 14 C -0.256 4.256 15 H 0.071 0.929 16 C -0.047 4.047 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.283 1.283 20 H -0.294 1.294 21 H -0.274 1.274 22 C 0.165 3.835 23 H 0.033 0.967 24 C -0.127 4.127 25 C -0.163 4.163 26 C -0.093 4.093 27 S 0.218 5.782 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.409 0.591 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.005 0.995 38 H 0.054 0.946 39 H 0.249 0.751 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 -21.677 2.264 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.317 4.317 3 C -0.151 4.151 4 C -0.205 4.205 5 C 0.362 3.638 6 O -0.458 6.458 7 N -0.352 5.352 8 C 0.042 3.958 9 H 0.076 0.924 10 C -0.147 4.147 11 C -0.169 4.169 12 C 0.052 3.948 13 N -0.324 5.324 14 C -0.386 4.386 15 H 0.088 0.912 16 C -0.242 4.242 17 N -0.578 5.578 18 Si 0.789 3.211 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.199 1.199 22 C 0.059 3.941 23 H 0.051 0.949 24 C -0.184 4.184 25 C -0.284 4.284 26 C -0.151 4.151 27 S 0.484 5.516 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.180 0.820 32 H 0.246 0.754 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.387 -23.243 2.280 26.436 hybrid contribution 0.913 2.748 -0.486 2.936 sum -11.474 -20.494 1.795 23.556 Atomic orbital electron populations 1.20474 0.85242 1.04440 1.03949 1.24682 1.01795 0.95637 1.09549 1.21233 0.89845 1.00749 1.03240 1.20128 0.93954 0.92703 1.13737 1.17984 0.87870 0.82587 0.75394 1.90705 1.20511 1.82272 1.52325 1.45767 1.10559 1.04721 1.74182 1.21315 0.90443 0.87544 0.96483 0.92431 1.21687 0.98674 0.98093 0.96243 1.22024 0.97715 0.96683 1.00464 1.20617 0.96055 0.93429 0.84721 1.44263 1.44599 1.38531 1.05001 1.19422 1.37687 0.92376 0.89090 0.91167 1.25765 1.02464 0.96629 0.99360 1.70168 1.49087 1.09919 1.28646 0.85381 0.78515 0.78013 0.79177 1.20962 1.22019 1.19941 1.20705 0.90879 0.86923 0.95631 0.94896 1.21719 1.00569 1.00949 0.95194 1.24728 1.03203 0.97095 1.03343 1.20575 0.89987 1.01043 1.03508 1.82747 0.91411 1.07600 1.69801 0.89564 0.90023 0.89350 0.82021 0.75410 0.92798 0.91656 0.93727 0.90908 0.97738 0.92763 0.94189 0.94168 0.90897 0.93096 0.90233 0.89487 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.35 71.24 0.74 0.01 16 2 C -0.20 -3.07 6.44 24.51 0.16 -2.91 16 3 C -0.12 -2.32 9.75 22.67 0.22 -2.10 16 4 C -0.19 -4.75 5.98 -19.87 -0.12 -4.87 16 5 C 0.57 18.13 7.76 86.60 0.67 18.80 16 6 O -0.58 -22.19 13.72 -4.14 -0.06 -22.25 16 7 N -0.70 -20.68 4.56 -445.55 -2.03 -22.72 16 8 C 0.15 5.44 2.00 45.09 0.09 5.53 16 9 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 10 C -0.11 -3.90 5.47 30.64 0.17 -3.73 16 11 C -0.13 -5.17 6.08 30.67 0.19 -4.98 16 12 C 0.18 8.61 5.28 86.36 0.46 9.07 16 13 N -0.60 -29.79 2.99 -675.23 -2.02 -31.80 16 14 C -0.26 -13.84 8.57 84.04 0.72 -13.12 16 15 H 0.07 3.72 6.24 -2.91 -0.02 3.70 16 16 C -0.05 -2.59 4.94 84.86 0.42 -2.17 16 17 N -0.93 -54.63 11.23 21.65 0.24 -54.39 16 18 Si 0.96 45.00 29.58 68.60 2.03 47.03 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.17 6.64 3.03 44.97 0.14 6.78 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 C -0.13 -4.67 7.83 71.98 0.56 -4.11 16 25 C -0.16 -3.72 6.34 25.17 0.16 -3.56 16 26 C -0.09 -2.08 9.60 71.24 0.68 -1.39 16 27 S 0.22 3.40 22.94 -56.49 -1.30 2.10 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.16 2.41 7.10 -2.91 -0.02 2.39 16 32 H 0.41 9.64 7.15 -92.71 -0.66 8.98 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.05 2.98 6.15 -2.39 -0.01 2.97 16 39 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 40 H 0.04 1.58 7.44 -2.39 -0.02 1.56 16 41 H 0.07 2.15 7.80 -2.39 -0.02 2.13 16 42 H 0.05 2.00 7.63 -2.38 -0.02 1.98 16 43 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 2.22 5.94 -2.39 -0.01 2.20 16 Total: -1.00 -67.77 366.65 2.45 -65.32 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.33 Total: 19.48 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.25 Total: -2.77 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.81 Total: -108.91 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.25 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.30 Total: 2.10 kcal Total: -67.77 2.45 -65.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993566772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.979 kcal (2) G-P(sol) polarization free energy of solvation -67.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds