Wall clock time and date at job start Tue Mar 31 2020 13:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32769 * 123.46142 * 2 1 4 4 S 1.75500 * 110.57919 * 180.24601 * 3 2 1 5 5 C 1.70449 * 92.44336 * 359.74231 * 4 3 2 6 6 C 1.36013 * 110.81752 * 359.97438 * 5 4 3 7 7 C 1.47191 * 123.46315 * 179.97438 * 6 5 4 8 8 O 1.21627 * 120.00057 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99752 * 0.03597 * 7 6 5 10 10 C 1.46493 * 119.99981 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47582 * 176.54794 * 10 9 7 12 12 N 1.46499 * 109.47071 * 54.62824 * 11 10 9 13 13 C 1.36940 * 120.00089 * 62.78211 * 12 11 10 14 14 H 1.08001 * 119.99576 * 354.56844 * 13 12 11 15 15 C 1.38803 * 120.00260 * 174.57744 * 13 12 11 16 16 N 1.31628 * 119.99948 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47397 * 59.99714 * 17 15 13 19 19 H 1.48504 * 109.47066 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47076 * 299.99146 * 17 15 13 21 21 C 1.52997 * 109.47568 * 174.63242 * 11 10 9 22 22 C 1.53005 * 109.47249 * 180.02562 * 21 11 10 23 23 C 1.53002 * 109.46897 * 299.99665 * 22 21 11 24 24 C 1.53010 * 109.46871 * 60.00209 * 23 22 21 25 25 C 1.52997 * 109.46996 * 299.99547 * 24 23 22 26 26 H 1.08997 * 109.47284 * 270.21533 * 1 2 3 27 27 H 1.09002 * 109.47149 * 30.21737 * 1 2 3 28 28 H 1.08996 * 109.47107 * 150.20867 * 1 2 3 29 29 H 1.08007 * 124.71172 * 359.97438 * 3 2 1 30 30 H 1.08003 * 124.59312 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00289 * 359.97438 * 9 7 6 32 32 H 1.08997 * 109.47856 * 56.54068 * 10 9 7 33 33 H 1.09008 * 109.46971 * 296.54507 * 10 9 7 34 34 H 0.97004 * 119.99925 * 243.05244 * 12 11 10 35 35 H 0.97005 * 119.99557 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.46990 * 299.99795 * 21 11 10 37 37 H 1.09002 * 109.47002 * 59.99726 * 21 11 10 38 38 H 1.08998 * 109.47142 * 179.97438 * 22 21 11 39 39 H 1.08994 * 109.47421 * 59.99612 * 22 21 11 40 40 H 1.09002 * 109.47341 * 300.00270 * 23 22 21 41 41 H 1.08994 * 109.47227 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.46719 * 180.02562 * 24 23 22 43 43 H 1.08994 * 109.47311 * 60.00136 * 24 23 22 44 44 H 1.08994 * 109.47571 * 300.00430 * 25 24 23 45 45 H 1.08998 * 109.46949 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2391 1.1076 0.0000 4 16 3.9499 0.7164 -0.0071 5 6 3.6411 -0.9599 -0.0023 6 6 2.3032 -1.2049 0.0049 7 6 1.7261 -2.5590 0.0099 8 8 0.5187 -2.7054 0.0158 9 7 2.5357 -3.6365 0.0081 10 6 1.9614 -4.9842 0.0136 11 6 3.0856 -6.0181 -0.0766 12 7 4.0525 -5.7833 0.9986 13 6 3.6640 -5.9009 2.3065 14 1 2.6266 -6.0799 2.5476 15 6 4.6034 -5.7897 3.3222 16 7 5.8678 -5.5717 3.0283 17 14 4.0733 -5.9493 5.1063 18 1 3.4657 -7.2866 5.3245 19 1 5.2565 -5.7936 5.9901 20 1 3.0765 -4.8950 5.4228 21 6 2.4982 -7.4238 0.0636 22 6 3.6225 -8.4577 -0.0260 23 6 4.3249 -8.3312 -1.3794 24 6 4.9123 -6.9254 -1.5196 25 6 3.7880 -5.8916 -1.4300 26 1 -0.3634 0.0039 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8918 -0.5106 29 1 1.8375 2.1103 -0.0004 30 1 4.4044 -1.7240 -0.0046 31 1 3.4987 -3.5197 0.0032 32 1 1.2935 -5.0981 -0.8402 33 1 1.4009 -5.1365 0.9361 34 1 4.9669 -5.5408 0.7842 35 1 6.5244 -5.4944 3.7382 36 1 1.9981 -7.5141 1.0280 37 1 1.7788 -7.5985 -0.7364 38 1 3.2041 -9.4592 0.0744 39 1 4.3415 -8.2829 0.7742 40 1 3.6058 -8.5060 -2.1797 41 1 5.1261 -9.0674 -1.4431 42 1 5.4123 -6.8351 -2.4840 43 1 5.6314 -6.7505 -0.7194 44 1 3.0690 -6.0664 -2.2302 45 1 4.2065 -4.8901 -1.5304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115470166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:56 Heat of formation + Delta-G solvation = -13.870124 kcal Electronic energy + Delta-G solvation = -25991.801069 eV Core-core repulsion = 22521.150804 eV Total energy + Delta-G solvation = -3470.650265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.77701 -38.66048 -36.85748 -34.46862 -33.33399 -31.60650 -30.56740 -30.22679 -28.57477 -27.59363 -25.51294 -23.81106 -23.73491 -22.11767 -20.84451 -20.11372 -18.82370 -18.18427 -17.66507 -17.11511 -16.63923 -15.31889 -15.03348 -14.79261 -14.50169 -14.03496 -13.97300 -13.64988 -13.58593 -13.27174 -13.12777 -12.89312 -12.74796 -12.54471 -12.13765 -11.90828 -11.85200 -11.75967 -11.69182 -11.55860 -11.12131 -10.86557 -10.84223 -10.78772 -10.54979 -10.20879 -10.04858 -9.81085 -9.63899 -9.39571 -9.30694 -8.88661 -8.84958 -8.49727 -8.18547 -7.02718 -5.82088 -3.10863 0.88632 1.61515 1.98243 2.13396 3.41714 3.46426 3.48287 3.66882 3.78101 4.55765 4.76654 5.15856 5.18818 5.25163 5.27714 5.35597 5.42617 5.55640 5.59690 5.60288 5.72910 5.79790 5.82231 5.85886 5.97419 6.03491 6.07874 6.11230 6.16105 6.19463 6.28136 6.31656 6.44458 6.49314 6.59014 6.63592 6.78928 6.80935 6.81448 6.98207 7.09276 7.20167 7.69916 8.06657 8.36122 8.70105 9.48708 10.01016 10.37612 11.39817 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004548 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.538477 B = 6154.398683 C = 7205.950791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.050 4.050 3 C -0.252 4.252 4 S 0.171 5.829 5 C -0.202 4.202 6 C -0.148 4.148 7 C 0.571 3.429 8 O -0.550 6.550 9 N -0.693 5.693 10 C 0.116 3.884 11 C 0.190 3.810 12 N -0.709 5.709 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.008 4.008 16 N -0.932 5.932 17 Si 0.899 3.101 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.287 1.287 21 C -0.114 4.114 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.113 4.113 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.401 0.599 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 7.595 -10.494 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.061 4.061 3 C -0.386 4.386 4 S 0.438 5.562 5 C -0.340 4.340 6 C -0.166 4.166 7 C 0.356 3.644 8 O -0.431 6.431 9 N -0.343 5.343 10 C -0.010 4.010 11 C 0.098 3.902 12 N -0.351 5.351 13 C -0.361 4.361 14 H 0.086 0.914 15 C -0.204 4.204 16 N -0.580 5.580 17 Si 0.731 3.269 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.151 4.151 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.182 0.818 30 H 0.190 0.810 31 H 0.237 0.763 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.946 8.303 -10.323 13.571 hybrid contribution -0.630 -0.875 1.215 1.624 sum -3.576 7.428 -9.108 12.285 Atomic orbital electron populations 1.20635 0.88861 1.03421 1.02824 1.19874 0.97465 0.89987 0.98797 1.25243 0.96461 1.02400 1.14521 1.82908 1.05696 0.97391 1.70235 1.25708 0.99908 1.02529 1.05897 1.20288 0.92008 0.94746 1.09554 1.17524 0.86376 0.83597 0.76901 1.90683 1.14170 1.86588 1.51619 1.45648 1.10257 1.05608 1.72754 1.21890 0.96768 0.81466 1.00898 1.19830 0.89644 0.92005 0.88690 1.42435 1.09294 1.82644 1.00765 1.19024 0.93168 1.41180 0.82683 0.91378 1.24650 0.95320 1.02845 0.97543 1.69635 1.00516 1.56352 1.31535 0.86391 0.77075 0.77925 0.85555 1.21323 1.21849 1.21414 1.21781 0.97215 0.95554 1.00821 1.21371 0.98644 0.96974 0.97700 1.21469 0.99070 0.96631 0.97796 1.21474 0.98111 0.94707 1.00997 1.21687 0.97889 0.98686 0.96876 0.91153 0.92272 0.88870 0.81751 0.81045 0.76278 0.92764 0.91704 0.78119 0.93576 0.91749 0.93719 0.93789 0.89815 0.93241 0.93048 0.93316 0.90720 0.92246 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 9.54 36.01 0.34 -0.95 16 2 C -0.05 -0.71 6.01 -104.06 -0.63 -1.33 16 3 C -0.25 -2.96 10.91 28.86 0.31 -2.64 16 4 S 0.17 1.93 23.02 -107.50 -2.48 -0.55 16 5 C -0.20 -2.80 10.38 29.93 0.31 -2.49 16 6 C -0.15 -2.35 5.98 -104.63 -0.63 -2.98 16 7 C 0.57 10.44 7.79 -12.62 -0.10 10.34 16 8 O -0.55 -11.23 14.21 5.25 0.07 -11.16 16 9 N -0.69 -12.23 5.06 -61.46 -0.31 -12.54 16 10 C 0.12 2.10 4.37 -4.05 -0.02 2.08 16 11 C 0.19 3.34 0.41 -131.82 -0.05 3.29 16 12 N -0.71 -15.12 3.40 -47.23 -0.16 -15.28 16 13 C -0.23 -5.72 8.70 -15.06 -0.13 -5.85 16 14 H 0.07 1.73 6.77 -52.49 -0.36 1.38 16 15 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 16 N -0.93 -26.04 13.07 55.49 0.73 -25.32 16 17 Si 0.90 21.89 29.55 -169.99 -5.02 16.86 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 C -0.11 -1.95 4.52 -26.73 -0.12 -2.07 16 22 C -0.11 -1.83 5.77 -26.73 -0.15 -1.99 16 23 C -0.11 -1.63 5.92 -26.72 -0.16 -1.79 16 24 C -0.12 -1.72 5.75 -26.73 -0.15 -1.87 16 25 C -0.11 -1.71 4.65 -26.73 -0.12 -1.83 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.09 1.41 6.03 -51.93 -0.31 1.10 16 29 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.17 2.24 7.01 -52.48 -0.37 1.87 16 31 H 0.40 6.83 5.89 -40.82 -0.24 6.59 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.34 7.51 -51.92 -0.39 0.95 16 34 H 0.38 8.78 6.63 -40.82 -0.27 8.51 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.06 1.21 7.23 -51.93 -0.38 0.84 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.70 7.60 -51.93 -0.39 1.30 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.29 6.92 -51.93 -0.36 0.94 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.82 7.28 -51.93 -0.38 0.44 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -28.49 364.34 -9.88 -38.36 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -6.81 Total: 14.52 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.39 Total: -10.39 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.25 Total: -53.13 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.48 Total: -0.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.49 -9.88 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115470166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.493 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds