Wall clock time and date at job start Tue Mar 31 2020 13:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32769 * 123.46142 * 2 1 4 4 S 1.75500 * 110.57919 * 180.24601 * 3 2 1 5 5 C 1.70449 * 92.44336 * 359.74231 * 4 3 2 6 6 C 1.36013 * 110.81752 * 359.97438 * 5 4 3 7 7 C 1.47191 * 123.46315 * 179.97438 * 6 5 4 8 8 O 1.21627 * 120.00057 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99752 * 0.03597 * 7 6 5 10 10 C 1.46493 * 119.99981 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47582 * 176.54794 * 10 9 7 12 12 N 1.46499 * 109.47071 * 54.62824 * 11 10 9 13 13 C 1.36940 * 120.00089 * 62.78211 * 12 11 10 14 14 H 1.08001 * 119.99576 * 354.56844 * 13 12 11 15 15 C 1.38803 * 120.00260 * 174.57744 * 13 12 11 16 16 N 1.31628 * 119.99948 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47397 * 59.99714 * 17 15 13 19 19 H 1.48504 * 109.47066 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47076 * 299.99146 * 17 15 13 21 21 C 1.52997 * 109.47568 * 174.63242 * 11 10 9 22 22 C 1.53005 * 109.47249 * 180.02562 * 21 11 10 23 23 C 1.53002 * 109.46897 * 299.99665 * 22 21 11 24 24 C 1.53010 * 109.46871 * 60.00209 * 23 22 21 25 25 C 1.52997 * 109.46996 * 299.99547 * 24 23 22 26 26 H 1.08997 * 109.47284 * 270.21533 * 1 2 3 27 27 H 1.09002 * 109.47149 * 30.21737 * 1 2 3 28 28 H 1.08996 * 109.47107 * 150.20867 * 1 2 3 29 29 H 1.08007 * 124.71172 * 359.97438 * 3 2 1 30 30 H 1.08003 * 124.59312 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00289 * 359.97438 * 9 7 6 32 32 H 1.08997 * 109.47856 * 56.54068 * 10 9 7 33 33 H 1.09008 * 109.46971 * 296.54507 * 10 9 7 34 34 H 0.97004 * 119.99925 * 243.05244 * 12 11 10 35 35 H 0.97005 * 119.99557 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.46990 * 299.99795 * 21 11 10 37 37 H 1.09002 * 109.47002 * 59.99726 * 21 11 10 38 38 H 1.08998 * 109.47142 * 179.97438 * 22 21 11 39 39 H 1.08994 * 109.47421 * 59.99612 * 22 21 11 40 40 H 1.09002 * 109.47341 * 300.00270 * 23 22 21 41 41 H 1.08994 * 109.47227 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.46719 * 180.02562 * 24 23 22 43 43 H 1.08994 * 109.47311 * 60.00136 * 24 23 22 44 44 H 1.08994 * 109.47571 * 300.00430 * 25 24 23 45 45 H 1.08998 * 109.46949 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2391 1.1076 0.0000 4 16 3.9499 0.7164 -0.0071 5 6 3.6411 -0.9599 -0.0023 6 6 2.3032 -1.2049 0.0049 7 6 1.7261 -2.5590 0.0099 8 8 0.5187 -2.7054 0.0158 9 7 2.5357 -3.6365 0.0081 10 6 1.9614 -4.9842 0.0136 11 6 3.0856 -6.0181 -0.0766 12 7 4.0525 -5.7833 0.9986 13 6 3.6640 -5.9009 2.3065 14 1 2.6266 -6.0799 2.5476 15 6 4.6034 -5.7897 3.3222 16 7 5.8678 -5.5717 3.0283 17 14 4.0733 -5.9493 5.1063 18 1 3.4657 -7.2866 5.3245 19 1 5.2565 -5.7936 5.9901 20 1 3.0765 -4.8950 5.4228 21 6 2.4982 -7.4238 0.0636 22 6 3.6225 -8.4577 -0.0260 23 6 4.3249 -8.3312 -1.3794 24 6 4.9123 -6.9254 -1.5196 25 6 3.7880 -5.8916 -1.4300 26 1 -0.3634 0.0039 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8918 -0.5106 29 1 1.8375 2.1103 -0.0004 30 1 4.4044 -1.7240 -0.0046 31 1 3.4987 -3.5197 0.0032 32 1 1.2935 -5.0981 -0.8402 33 1 1.4009 -5.1365 0.9361 34 1 4.9669 -5.5408 0.7842 35 1 6.5244 -5.4944 3.7382 36 1 1.9981 -7.5141 1.0280 37 1 1.7788 -7.5985 -0.7364 38 1 3.2041 -9.4592 0.0744 39 1 4.3415 -8.2829 0.7742 40 1 3.6058 -8.5060 -2.1797 41 1 5.1261 -9.0674 -1.4431 42 1 5.4123 -6.8351 -2.4840 43 1 5.6314 -6.7505 -0.7194 44 1 3.0690 -6.0664 -2.2302 45 1 4.2065 -4.8901 -1.5304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115470166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:55 Heat of formation + Delta-G solvation = -29.716816 kcal Electronic energy + Delta-G solvation = -25992.488233 eV Core-core repulsion = 22521.150804 eV Total energy + Delta-G solvation = -3471.337429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15124 -40.01936 -38.03158 -35.91186 -35.10483 -33.08024 -31.87992 -31.54402 -30.22082 -28.64729 -26.83633 -25.71588 -24.94487 -23.44302 -22.08507 -21.46660 -20.10359 -19.63977 -19.00492 -18.64070 -17.88859 -16.87950 -16.44633 -16.22030 -16.00291 -15.65424 -15.37386 -15.05751 -14.83404 -14.53394 -14.29618 -14.27515 -14.04515 -13.60417 -13.50559 -13.40866 -13.21168 -12.99386 -12.91786 -12.80758 -12.77133 -12.60454 -12.52685 -12.09348 -11.88914 -11.82318 -11.68205 -11.31742 -11.09753 -10.87782 -10.71292 -10.65683 -10.00554 -9.80096 -9.21268 -8.91590 -7.88559 -5.12642 -0.19612 0.64821 0.98507 1.01465 1.43961 1.45701 1.49725 2.31387 2.43665 2.58132 3.44232 3.75335 3.80606 3.92085 3.98702 4.06744 4.13659 4.24124 4.37707 4.41820 4.48143 4.66036 4.67090 4.73703 4.75873 4.77562 4.80825 4.83639 4.90859 4.96093 5.02163 5.06352 5.17818 5.21581 5.29527 5.44378 5.48628 5.50495 5.55948 5.60462 5.62246 5.69838 5.81094 6.34446 6.65414 7.29225 7.43459 8.15597 8.42165 9.33569 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004548 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.538477 B = 6154.398683 C = 7205.950791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.078 4.078 3 C -0.241 4.241 4 S 0.238 5.762 5 C -0.215 4.215 6 C -0.179 4.179 7 C 0.564 3.436 8 O -0.580 6.580 9 N -0.692 5.692 10 C 0.123 3.877 11 C 0.189 3.811 12 N -0.708 5.708 13 C -0.207 4.207 14 H 0.060 0.940 15 C -0.061 4.061 16 N -0.959 5.959 17 Si 0.944 3.056 18 H -0.285 1.285 19 H -0.298 1.298 20 H -0.293 1.293 21 C -0.113 4.113 22 C -0.106 4.106 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.107 4.107 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.197 0.803 30 H 0.173 0.827 31 H 0.404 0.596 32 H 0.067 0.933 33 H 0.032 0.968 34 H 0.377 0.623 35 H 0.247 0.753 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 8.804 -12.419 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.376 4.376 4 S 0.506 5.494 5 C -0.353 4.353 6 C -0.197 4.197 7 C 0.351 3.649 8 O -0.463 6.463 9 N -0.342 5.342 10 C -0.003 4.003 11 C 0.099 3.901 12 N -0.348 5.348 13 C -0.339 4.339 14 H 0.078 0.922 15 C -0.254 4.254 16 N -0.610 5.610 17 Si 0.776 3.224 18 H -0.211 1.211 19 H -0.224 1.224 20 H -0.220 1.220 21 C -0.152 4.152 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.145 4.145 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.215 0.785 30 H 0.191 0.809 31 H 0.240 0.760 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.211 0.789 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.913 9.506 -12.268 15.791 hybrid contribution -0.670 -1.192 1.754 2.224 sum -3.583 8.315 -10.514 13.875 Atomic orbital electron populations 1.20561 0.88716 1.03522 1.02454 1.19991 0.97951 0.90130 1.00839 1.25660 0.96828 1.03144 1.11922 1.82707 1.04613 0.94273 1.67810 1.25911 0.99309 1.04896 1.05230 1.20257 0.93110 0.93976 1.12398 1.18006 0.86107 0.84698 0.76057 1.90658 1.15367 1.87213 1.53031 1.45642 1.10336 1.05438 1.72759 1.21768 0.96792 0.81998 0.99791 1.20033 0.88939 0.92054 0.89115 1.42446 1.09601 1.82289 1.00509 1.19139 0.92443 1.38034 0.84295 0.92213 1.25120 0.95627 1.04698 0.99958 1.69738 1.00986 1.58769 1.31520 0.85658 0.76195 0.77586 0.82972 1.21146 1.22391 1.21980 1.21766 0.97782 0.95196 1.00500 1.21298 0.97627 0.97482 0.97937 1.21448 0.99659 0.96578 0.96769 1.21434 0.97437 0.94829 1.01243 1.21658 0.98270 0.99172 0.95422 0.91803 0.89342 0.91508 0.78547 0.80948 0.75974 0.91451 0.94940 0.78915 0.94434 0.94323 0.90901 0.92462 0.94046 0.90771 0.92205 0.90687 0.93754 0.89906 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.42 9.54 71.24 0.68 -1.74 16 2 C -0.08 -2.14 6.01 -19.46 -0.12 -2.26 16 3 C -0.24 -4.96 10.91 66.64 0.73 -4.23 16 4 S 0.24 4.70 23.02 -56.49 -1.30 3.40 16 5 C -0.21 -5.74 10.38 67.30 0.70 -5.04 16 6 C -0.18 -5.66 5.98 -19.87 -0.12 -5.78 16 7 C 0.56 21.11 7.79 86.59 0.67 21.78 16 8 O -0.58 -24.49 14.21 -4.12 -0.06 -24.55 16 9 N -0.69 -24.80 5.06 -466.61 -2.36 -27.16 16 10 C 0.12 4.48 4.37 86.38 0.38 4.86 16 11 C 0.19 6.58 0.41 3.61 0.00 6.59 16 12 N -0.71 -30.78 3.40 -303.35 -1.03 -31.81 16 13 C -0.21 -10.58 8.70 84.03 0.73 -9.85 16 14 H 0.06 3.14 6.77 -2.91 -0.02 3.12 16 15 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 16 N -0.96 -54.95 13.07 21.65 0.28 -54.67 16 17 Si 0.94 46.11 29.55 68.60 2.03 48.14 16 18 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 20 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 21 C -0.11 -3.78 4.52 30.59 0.14 -3.64 16 22 C -0.11 -3.46 5.77 30.60 0.18 -3.28 16 23 C -0.11 -2.85 5.92 30.60 0.18 -2.67 16 24 C -0.11 -3.11 5.75 30.60 0.18 -2.93 16 25 C -0.11 -3.03 4.65 30.60 0.14 -2.89 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.67 8.13 -2.39 -0.02 1.65 16 28 H 0.07 2.08 6.03 -2.39 -0.01 2.07 16 29 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.17 4.43 7.01 -2.91 -0.02 4.41 16 31 H 0.40 13.91 5.89 -92.71 -0.55 13.37 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.38 7.51 -2.38 -0.02 1.37 16 34 H 0.38 17.63 6.63 -92.70 -0.62 17.02 16 35 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 36 H 0.04 1.47 7.23 -2.39 -0.02 1.46 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.70 7.60 -2.39 -0.02 1.69 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.04 1.51 6.92 -2.39 -0.02 1.50 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.65 7.28 -2.39 -0.02 1.63 16 Total: -1.00 -63.86 364.34 2.34 -61.52 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: -0.15 Total: 39.09 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.94 Total: -13.97 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -3.11 Total: -113.64 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.06 Total: -24.55 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -1.30 Total: 3.40 kcal Total: -63.86 2.34 -61.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115470166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.799 kcal (2) G-P(sol) polarization free energy of solvation -63.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds