Wall clock time and date at job start Tue Mar 31 2020 12:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38674 * 120.41898 * 2 1 4 4 C 1.38634 * 118.41739 * 179.75535 * 3 2 1 5 5 C 1.38224 * 119.16226 * 0.50756 * 4 3 2 6 6 C 1.50704 * 119.61535 * 179.75672 * 5 4 3 7 7 C 1.50695 * 115.55007 * 75.34782 * 6 5 4 8 8 O 1.21288 * 119.99807 * 214.42080 * 7 6 5 9 9 N 1.34778 * 120.00107 * 34.42641 * 7 6 5 10 10 C 1.39945 * 119.99840 * 185.04096 * 9 7 6 11 11 C 1.39291 * 119.94516 * 214.67221 * 10 9 7 12 12 C 1.38478 * 120.42868 * 180.02562 * 11 10 9 13 13 C 1.37688 * 120.32431 * 359.95686 * 12 11 10 14 14 C 1.40741 * 119.88189 * 0.03937 * 13 12 11 15 15 C 1.41410 * 120.20935 * 180.25523 * 14 13 12 16 16 H 1.08001 * 120.00096 * 151.32628 * 15 14 13 17 17 C 1.39930 * 119.99997 * 331.32380 * 15 14 13 18 18 N 1.30833 * 119.99825 * 160.76187 * 17 15 14 19 19 Si 1.86797 * 119.99944 * 340.76725 * 17 15 14 20 20 H 1.48494 * 109.47459 * 94.82829 * 19 17 15 21 21 H 1.48502 * 109.47083 * 214.82697 * 19 17 15 22 22 H 1.48497 * 109.47085 * 334.82353 * 19 17 15 23 23 C 1.38241 * 119.94754 * 34.69108 * 10 9 7 24 24 C 1.53008 * 117.51482 * 221.04549 * 6 5 4 25 25 C 1.52996 * 117.49614 * 289.67317 * 6 5 4 26 26 N 1.31856 * 120.76197 * 359.48060 * 5 4 3 27 27 C 1.31881 * 121.72673 * 0.27055 * 26 5 4 28 28 H 1.09000 * 109.46721 * 269.97704 * 1 2 3 29 29 H 1.09000 * 109.47019 * 29.97649 * 1 2 3 30 30 H 1.09003 * 109.46896 * 149.98308 * 1 2 3 31 31 H 1.07992 * 120.79045 * 0.04600 * 3 2 1 32 32 H 1.08001 * 120.41294 * 180.28317 * 4 3 2 33 33 H 0.96997 * 119.99823 * 5.03781 * 9 7 6 34 34 H 1.08003 * 119.78741 * 0.02562 * 11 10 9 35 35 H 1.08005 * 119.84242 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.06208 * 180.02562 * 13 12 11 37 37 H 0.97004 * 119.99883 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.16317 * 0.02562 * 23 10 9 39 39 H 1.08990 * 117.49764 * 214.97130 * 24 6 5 40 40 H 1.09000 * 117.49755 * 359.97438 * 24 6 5 41 41 H 1.09004 * 117.50160 * 359.97438 * 25 6 5 42 42 H 1.09005 * 117.49582 * 145.00356 * 25 6 5 43 43 H 1.07998 * 119.61528 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 0.0052 5 6 4.2256 -0.0824 -0.0005 6 6 5.7313 -0.1469 -0.0005 7 6 6.3951 0.1626 1.3165 8 8 7.4639 0.7356 1.3370 9 7 5.8012 -0.1973 2.4716 10 6 6.3637 0.1821 3.6955 11 6 6.2772 -0.6696 4.7943 12 6 6.8298 -0.3040 6.0103 13 6 7.4723 0.9062 6.1461 14 6 7.5675 1.7770 5.0446 15 6 8.2305 3.0193 5.1750 16 1 8.7106 3.4677 4.3178 17 6 8.2644 3.6676 6.4146 18 7 9.1614 4.5916 6.6452 19 14 7.0289 3.2136 7.7400 20 1 7.6261 2.2014 8.6477 21 1 6.6702 4.4262 8.5186 22 1 5.8081 2.6525 7.1076 23 6 7.0041 1.4017 3.8122 24 6 6.3939 -1.1954 -0.8964 25 6 6.4568 0.2854 -1.2762 26 7 3.5254 -1.1996 -0.0005 27 6 2.2067 -1.1916 -0.0004 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6890 2.1423 0.0007 32 1 4.1735 2.0592 0.0100 33 1 4.9838 -0.7193 2.4545 34 1 5.7758 -1.6213 4.6973 35 1 6.7576 -0.9719 6.8560 36 1 7.9021 1.1868 7.0963 37 1 9.1852 5.0407 7.5047 38 1 7.0710 2.0630 2.9610 39 1 7.3099 -1.6612 -0.5333 40 1 5.7408 -1.8390 -1.4857 41 1 5.8452 0.6161 -2.1157 42 1 7.4145 0.7937 -1.1629 43 1 1.6673 -2.1272 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178146626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:06 Heat of formation + Delta-G solvation = 24.309652 kcal Electronic energy + Delta-G solvation = -26091.021476 eV Core-core repulsion = 22486.582859 eV Total energy + Delta-G solvation = -3604.438617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04591 -40.94557 -39.45378 -37.59142 -36.25878 -35.09262 -34.25773 -32.82462 -32.23187 -30.64246 -28.41130 -27.21738 -25.83866 -24.69395 -23.45841 -23.22745 -22.76683 -22.54262 -20.75004 -19.66232 -18.92858 -17.84415 -17.42639 -17.23493 -16.84028 -16.52995 -16.13950 -16.05503 -15.92994 -15.29576 -15.12671 -15.08623 -14.60307 -14.32311 -14.10797 -13.89195 -13.76518 -13.59613 -13.40575 -13.26361 -13.01943 -12.91134 -12.62274 -12.50479 -12.41647 -11.83328 -11.75429 -11.71658 -11.55850 -11.22385 -11.14342 -10.80761 -10.76947 -10.42255 -9.74067 -9.59387 -8.96341 -8.91633 -6.56506 0.01251 0.29035 0.57280 0.75910 1.24523 1.40520 1.42220 1.51812 1.98512 2.12111 2.53181 2.61801 2.80279 3.02822 3.42909 3.59442 3.63321 3.77482 3.89059 3.93210 4.05625 4.17405 4.28592 4.35577 4.47025 4.56708 4.58761 4.63938 4.72259 4.81420 4.85592 4.87130 4.89429 4.94560 4.96791 5.12057 5.15496 5.20918 5.30182 5.34671 5.54743 5.66864 5.73524 5.75216 5.88720 6.18300 6.32352 6.43262 6.70833 6.75919 6.95316 7.11032 8.15477 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.003459 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.330567 B = 8092.924249 C = 8713.752436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.130 4.130 3 C -0.079 4.079 4 C -0.163 4.163 5 C 0.141 3.859 6 C -0.130 4.130 7 C 0.547 3.453 8 O -0.556 6.556 9 N -0.654 5.654 10 C 0.167 3.833 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.263 4.263 14 C 0.087 3.913 15 C -0.488 4.488 16 H 0.043 0.957 17 C 0.047 3.953 18 N -0.848 5.848 19 Si 0.975 3.025 20 H -0.250 1.250 21 H -0.274 1.274 22 H -0.253 1.253 23 C -0.223 4.223 24 C -0.112 4.112 25 C -0.125 4.125 26 N -0.484 5.484 27 C 0.092 3.908 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.156 0.844 32 H 0.127 0.873 33 H 0.415 0.585 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.104 0.896 37 H 0.296 0.704 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.587 -11.802 -13.075 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.105 4.105 4 C -0.183 4.183 5 C 0.004 3.996 6 C -0.134 4.134 7 C 0.335 3.665 8 O -0.434 6.434 9 N -0.298 5.298 10 C 0.074 3.926 11 C -0.267 4.267 12 C -0.077 4.077 13 C -0.282 4.282 14 C 0.084 3.916 15 C -0.517 4.517 16 H 0.062 0.938 17 C -0.168 4.168 18 N -0.474 5.474 19 Si 0.797 3.203 20 H -0.175 1.175 21 H -0.201 1.201 22 H -0.177 1.177 23 C -0.245 4.245 24 C -0.149 4.149 25 C -0.163 4.163 26 N -0.192 5.192 27 C -0.065 4.065 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.174 0.826 32 H 0.145 0.855 33 H 0.252 0.748 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.118 0.882 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.242 -11.962 -12.996 25.392 hybrid contribution -0.302 1.300 0.504 1.427 sum -18.544 -10.662 -12.492 24.771 Atomic orbital electron populations 1.20806 0.87670 1.04494 1.03551 1.21334 0.99360 0.93490 0.99027 1.21802 0.92962 0.99937 0.95788 1.22019 0.96304 0.98704 1.01266 1.19657 0.91961 0.89343 0.98641 1.19793 0.90394 1.13057 0.90156 1.19963 0.84159 0.77371 0.84988 1.90761 1.23110 1.42028 1.87468 1.43317 1.28236 1.54532 1.03692 1.17663 0.96862 0.92720 0.85370 1.20587 1.12431 1.00740 0.92896 1.20856 0.94628 0.95061 0.97190 1.21184 1.10936 0.97318 0.98776 1.17697 0.89146 0.92737 0.92028 1.19430 1.31158 1.04898 0.96237 0.93824 1.26942 0.96135 0.93147 1.00575 1.69741 1.29851 1.21801 1.26003 0.85378 0.79802 0.77963 0.77182 1.17492 1.20077 1.17698 1.20885 1.08356 0.97157 0.98071 1.23046 1.01411 0.92012 0.98421 1.23174 1.01510 0.98063 0.93543 1.67370 1.09309 1.30441 1.12052 1.23187 0.88791 0.99140 0.95405 0.90066 0.90324 0.89421 0.82640 0.85521 0.74825 0.84532 0.83975 0.87850 0.89363 0.89607 0.88325 0.85354 0.85499 0.88197 0.79858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.04 71.24 0.72 -0.11 16 2 C -0.13 -1.88 5.90 -19.77 -0.12 -2.00 16 3 C -0.08 -1.37 9.86 22.47 0.22 -1.15 16 4 C -0.16 -3.72 9.78 22.36 0.22 -3.50 16 5 C 0.14 3.42 5.09 42.55 0.22 3.64 16 6 C -0.13 -3.59 2.20 -53.67 -0.12 -3.70 16 7 C 0.55 20.65 7.11 87.66 0.62 21.27 16 8 O -0.56 -26.28 14.02 -3.06 -0.04 -26.33 16 9 N -0.65 -24.16 5.20 -303.64 -1.58 -25.74 16 10 C 0.17 7.44 6.25 38.10 0.24 7.68 16 11 C -0.25 -9.74 9.97 22.58 0.23 -9.51 16 12 C -0.06 -2.42 10.02 22.20 0.22 -2.20 16 13 C -0.26 -12.93 7.23 22.75 0.16 -12.76 16 14 C 0.09 4.87 5.12 -21.31 -0.11 4.76 16 15 C -0.49 -29.89 9.57 23.46 0.22 -29.67 16 16 H 0.04 2.95 8.06 -2.91 -0.02 2.92 16 17 C 0.05 2.63 5.40 85.25 0.46 3.09 16 18 N -0.85 -48.66 13.93 21.82 0.30 -48.35 16 19 Si 0.97 44.00 24.52 68.60 1.68 45.68 16 20 H -0.25 -10.42 6.65 99.48 0.66 -9.76 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.25 -11.64 6.91 99.48 0.69 -10.95 16 23 C -0.22 -11.92 8.39 22.85 0.19 -11.73 16 24 C -0.11 -2.51 9.78 30.60 0.30 -2.21 16 25 C -0.13 -2.94 9.75 30.59 0.30 -2.64 16 26 N -0.48 -10.57 10.08 -183.89 -1.85 -12.42 16 27 C 0.09 1.50 10.86 84.67 0.92 2.42 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.48 8.10 -2.39 -0.02 0.46 16 30 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.41 12.83 8.19 -92.71 -0.76 12.08 16 34 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.10 4.98 4.61 -2.91 -0.01 4.97 16 37 H 0.30 15.04 8.30 -92.71 -0.77 14.27 16 38 H 0.09 4.93 6.50 -2.91 -0.02 4.92 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 42 H 0.10 2.71 7.67 -2.38 -0.02 2.69 16 43 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -74.72 363.09 3.62 -71.09 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.22 Total: 34.38 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 4.89 Total: -38.32 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.13 Total: -86.51 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.04 Total: -26.33 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.68 Total: 45.68 kcal Total: -74.72 3.62 -71.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178146626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.404 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds