Wall clock time and date at job start Tue Mar 31 2020 14:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35984 * 116.99825 * 2 1 4 4 C 1.38539 * 120.08549 * 359.97438 * 3 2 1 5 5 C 1.38251 * 120.01585 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.18095 * 0.02562 * 5 4 3 7 7 C 1.38201 * 120.16325 * 359.97213 * 6 5 4 8 8 C 1.38724 * 119.98707 * 0.02617 * 7 6 5 9 9 N 1.40111 * 120.08916 * 179.97438 * 8 7 6 10 10 C 1.34767 * 120.00019 * 312.69767 * 9 8 7 11 11 S 1.71198 * 120.00092 * 4.28351 * 10 9 8 12 12 N 1.34777 * 120.00186 * 184.28095 * 10 9 8 13 13 C 1.46505 * 120.00431 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47229 * 89.99654 * 13 12 10 15 15 H 1.07999 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99832 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99894 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 120.00014 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47208 * 89.99990 * 18 16 14 20 20 H 1.48495 * 109.46913 * 209.99955 * 18 16 14 21 21 H 1.48501 * 109.46874 * 329.99658 * 18 16 14 22 22 C 1.46503 * 119.99612 * 359.97438 * 12 10 9 23 23 C 1.52998 * 109.46939 * 90.00582 * 22 12 10 24 24 C 1.53002 * 109.47398 * 64.99542 * 23 22 12 25 25 C 1.52997 * 109.47160 * 185.00011 * 23 22 12 26 26 H 1.08995 * 109.46996 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47451 * 300.00257 * 1 2 3 28 28 H 1.09002 * 109.46918 * 60.00492 * 1 2 3 29 29 H 1.08006 * 119.98681 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.90835 * 180.02562 * 5 4 3 31 31 H 1.08003 * 119.91830 * 179.97438 * 6 5 4 32 32 H 1.08006 * 120.00728 * 179.75198 * 7 6 5 33 33 H 0.97002 * 119.99548 * 132.70757 * 9 8 7 34 34 H 1.08995 * 109.46673 * 210.00080 * 13 12 10 35 35 H 1.09003 * 109.46670 * 329.99711 * 13 12 10 36 36 H 0.97002 * 119.99728 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47196 * 210.00260 * 22 12 10 38 38 H 1.08996 * 109.47684 * 330.00339 * 22 12 10 39 39 H 1.09007 * 109.46857 * 304.99648 * 23 22 12 40 40 H 1.08997 * 109.46533 * 60.00445 * 24 23 22 41 41 H 1.08997 * 109.47007 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47245 * 300.00001 * 24 23 22 43 43 H 1.09000 * 109.47486 * 59.99886 * 25 23 22 44 44 H 1.09006 * 109.47478 * 179.97438 * 25 23 22 45 45 H 1.09007 * 109.46940 * 299.99586 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3031 3.6808 -0.0016 7 6 4.0614 2.5254 -0.0010 8 6 3.4373 1.2865 -0.0005 9 7 4.2040 0.1137 -0.0004 10 6 5.2349 -0.0174 -0.8585 11 16 5.6766 1.2896 -1.8721 12 7 5.9181 -1.1776 -0.9188 13 6 7.0391 -1.3201 -1.8512 14 6 8.3152 -0.8956 -1.1712 15 1 8.2935 -0.5543 -0.1468 16 6 9.5104 -0.9430 -1.8568 17 7 10.6240 -0.5721 -1.2635 18 14 9.5479 -1.5327 -3.6290 19 1 9.3567 -0.3756 -4.5399 20 1 10.8580 -2.1728 -3.9100 21 1 8.4587 -2.5186 -3.8456 22 6 5.5405 -2.2959 -0.0510 23 6 4.5031 -3.1663 -0.7631 24 6 5.1376 -3.8086 -1.9983 25 6 4.0165 -4.2613 0.1883 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2148 2.3194 -0.0005 30 1 1.3340 4.5112 -0.0011 31 1 3.7902 4.6448 -0.0024 32 1 5.1397 2.5870 -0.0055 33 1 3.9926 -0.6038 0.6172 34 1 7.1223 -2.3612 -2.1628 35 1 6.8668 -0.6919 -2.7252 36 1 11.4649 -0.6051 -1.7461 37 1 6.4230 -2.8944 0.1753 38 1 5.1162 -1.9096 0.8757 39 1 3.6584 -2.5484 -1.0682 40 1 5.9821 -4.4264 -1.6931 41 1 4.3986 -4.4290 -2.5053 42 1 5.4841 -3.0285 -2.6760 43 1 3.5644 -3.8036 1.0682 44 1 3.2771 -4.8811 -0.3189 45 1 4.8612 -4.8791 0.4934 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016280172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:07 Heat of formation + Delta-G solvation = 16.188600 kcal Electronic energy + Delta-G solvation = -25788.395094 eV Core-core repulsion = 22319.048273 eV Total energy + Delta-G solvation = -3469.346821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50755 -39.17192 -37.50675 -35.83020 -34.35491 -32.44009 -30.13320 -29.89529 -28.32813 -27.30587 -27.12014 -26.65604 -23.62266 -22.28956 -21.79613 -21.15144 -20.04115 -18.57413 -17.64429 -17.26339 -16.99746 -16.06385 -15.80626 -15.52766 -15.12946 -14.73475 -14.60863 -14.22140 -13.94312 -13.86359 -13.59610 -13.05934 -12.83092 -12.53000 -12.41074 -12.33826 -12.14595 -11.95558 -11.72919 -11.57632 -11.29726 -11.15595 -11.08349 -11.02582 -10.78633 -10.75503 -10.52312 -10.31362 -10.17519 -9.60703 -9.03087 -8.56756 -8.44743 -7.79030 -6.95535 -6.32906 -6.07701 -4.06502 1.28648 1.56994 2.15475 2.59295 3.12204 3.25299 3.32458 3.36987 3.42824 3.69961 3.92448 4.41330 4.74609 4.77846 4.82334 4.93076 4.96437 5.01769 5.06857 5.24426 5.25821 5.32694 5.35665 5.52705 5.53397 5.62545 5.64592 5.78339 5.84317 5.89637 5.96677 6.04301 6.20385 6.26015 6.31791 6.39022 6.43856 6.61101 6.75303 6.80250 6.92828 7.16449 7.27951 7.52695 7.54968 7.81635 8.44363 8.91966 9.50427 11.05422 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.004806 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.379944 B = 5824.383592 C = 7369.427148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.116 3.884 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.151 4.151 7 C -0.028 4.028 8 C 0.111 3.889 9 N -0.641 5.641 10 C 0.560 3.440 11 S -0.638 6.638 12 N -0.527 5.527 13 C 0.206 3.794 14 C -0.521 4.521 15 H 0.074 0.926 16 C 0.081 3.919 17 N -0.894 5.894 18 Si 0.872 3.128 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.096 3.904 23 C -0.113 4.113 24 C -0.152 4.152 25 C -0.142 4.142 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.156 0.844 33 H 0.401 0.599 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.265 0.735 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.310 -2.526 5.500 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.068 3.932 4 C -0.232 4.232 5 C -0.101 4.101 6 C -0.171 4.171 7 C -0.052 4.052 8 C 0.016 3.984 9 N -0.270 5.270 10 C 0.203 3.797 11 S -0.503 6.503 12 N -0.230 5.230 13 C 0.086 3.914 14 C -0.559 4.559 15 H 0.092 0.908 16 C -0.122 4.122 17 N -0.532 5.532 18 Si 0.699 3.301 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.030 4.030 23 C -0.133 4.133 24 C -0.209 4.209 25 C -0.200 4.200 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.173 0.827 33 H 0.241 0.759 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.588 -2.013 4.731 21.220 hybrid contribution -0.413 -1.171 -0.113 1.247 sum -21.001 -3.184 4.617 21.737 Atomic orbital electron populations 1.23002 0.78585 1.03614 1.01270 1.86044 1.21213 1.26879 1.89127 1.18862 0.90436 0.84739 0.99165 1.20885 0.99395 0.91856 1.11054 1.20917 0.94769 0.96638 0.97769 1.20922 0.93379 0.98299 1.04550 1.21518 1.02432 0.89626 0.91582 1.16672 0.85899 0.86234 1.09578 1.42043 1.29793 1.18508 1.36691 1.22234 0.81875 0.90029 0.85598 1.93085 1.79079 1.29192 1.48932 1.47398 1.30037 1.08313 1.37276 1.20427 0.82961 0.98171 0.89877 1.21009 0.89141 1.44957 1.00828 0.90806 1.24703 0.95266 0.94591 0.97666 1.69877 0.98610 1.47490 1.37252 0.86918 0.77443 0.79692 0.86079 1.19428 1.21198 1.19209 1.21955 0.99986 0.88764 0.92337 1.21557 0.97979 0.97037 0.96715 1.21963 1.00540 1.01011 0.97381 1.21767 1.01223 0.98211 0.98839 0.88545 0.92774 0.92692 0.85598 0.86041 0.85557 0.82677 0.75913 0.94012 0.91414 0.92511 0.87994 0.91447 0.91019 0.92142 0.92935 0.91582 0.92719 0.92384 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.92 10.24 -19.69 -0.20 -4.12 16 3 C 0.12 1.59 6.70 -39.07 -0.26 1.32 16 4 C -0.21 -2.46 9.04 -39.47 -0.36 -2.82 16 5 C -0.08 -0.95 10.04 -39.57 -0.40 -1.34 16 6 C -0.15 -2.04 10.04 -39.58 -0.40 -2.43 16 7 C -0.03 -0.47 7.89 -39.42 -0.31 -0.78 16 8 C 0.11 1.77 5.89 -83.50 -0.49 1.28 16 9 N -0.64 -10.50 4.95 -11.29 -0.06 -10.55 16 10 C 0.56 11.27 7.56 -86.93 -0.66 10.61 16 11 S -0.64 -15.36 24.39 -107.50 -2.62 -17.98 16 12 N -0.53 -10.29 2.28 -177.08 -0.40 -10.69 16 13 C 0.21 4.78 3.06 -5.19 -0.02 4.77 16 14 C -0.52 -14.41 9.94 -34.44 -0.34 -14.75 16 15 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 16 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 17 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 18 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 22 C 0.10 1.42 4.70 -4.04 -0.02 1.41 16 23 C -0.11 -1.41 3.13 -90.62 -0.28 -1.70 16 24 C -0.15 -2.06 8.18 37.16 0.30 -1.76 16 25 C -0.14 -1.37 9.19 37.16 0.34 -1.03 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.13 1.11 6.30 -52.48 -0.33 0.78 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.16 2.94 6.29 -49.44 -0.31 2.63 16 33 H 0.40 5.58 6.52 -40.82 -0.27 5.31 16 34 H 0.04 0.92 5.04 -51.93 -0.26 0.66 16 35 H 0.07 1.73 6.00 -51.93 -0.31 1.42 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 38 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.07 5.90 -51.93 -0.31 0.76 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -34.08 369.92 -10.32 -44.41 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.72 Total: 6.86 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.99 Total: -3.78 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.31 Total: -47.72 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.20 Total: -4.12 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: -15.36 SS G_CDS: -2.62 Total: -17.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.08 -10.32 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016280172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.596 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds