Wall clock time and date at job start Tue Mar 31 2020 14:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35984 * 116.99825 * 2 1 4 4 C 1.38539 * 120.08549 * 359.97438 * 3 2 1 5 5 C 1.38251 * 120.01585 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.18095 * 0.02562 * 5 4 3 7 7 C 1.38201 * 120.16325 * 359.97213 * 6 5 4 8 8 C 1.38724 * 119.98707 * 0.02617 * 7 6 5 9 9 N 1.40111 * 120.08916 * 179.97438 * 8 7 6 10 10 C 1.34767 * 120.00019 * 312.69767 * 9 8 7 11 11 S 1.71198 * 120.00092 * 4.28351 * 10 9 8 12 12 N 1.34777 * 120.00186 * 184.28095 * 10 9 8 13 13 C 1.46505 * 120.00431 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47229 * 89.99654 * 13 12 10 15 15 H 1.07999 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99832 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99894 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 120.00014 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47208 * 89.99990 * 18 16 14 20 20 H 1.48495 * 109.46913 * 209.99955 * 18 16 14 21 21 H 1.48501 * 109.46874 * 329.99658 * 18 16 14 22 22 C 1.46503 * 119.99612 * 359.97438 * 12 10 9 23 23 C 1.52998 * 109.46939 * 90.00582 * 22 12 10 24 24 C 1.53002 * 109.47398 * 64.99542 * 23 22 12 25 25 C 1.52997 * 109.47160 * 185.00011 * 23 22 12 26 26 H 1.08995 * 109.46996 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47451 * 300.00257 * 1 2 3 28 28 H 1.09002 * 109.46918 * 60.00492 * 1 2 3 29 29 H 1.08006 * 119.98681 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.90835 * 180.02562 * 5 4 3 31 31 H 1.08003 * 119.91830 * 179.97438 * 6 5 4 32 32 H 1.08006 * 120.00728 * 179.75198 * 7 6 5 33 33 H 0.97002 * 119.99548 * 132.70757 * 9 8 7 34 34 H 1.08995 * 109.46673 * 210.00080 * 13 12 10 35 35 H 1.09003 * 109.46670 * 329.99711 * 13 12 10 36 36 H 0.97002 * 119.99728 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47196 * 210.00260 * 22 12 10 38 38 H 1.08996 * 109.47684 * 330.00339 * 22 12 10 39 39 H 1.09007 * 109.46857 * 304.99648 * 23 22 12 40 40 H 1.08997 * 109.46533 * 60.00445 * 24 23 22 41 41 H 1.08997 * 109.47007 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47245 * 300.00001 * 24 23 22 43 43 H 1.09000 * 109.47486 * 59.99886 * 25 23 22 44 44 H 1.09006 * 109.47478 * 179.97438 * 25 23 22 45 45 H 1.09007 * 109.46940 * 299.99586 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3031 3.6808 -0.0016 7 6 4.0614 2.5254 -0.0010 8 6 3.4373 1.2865 -0.0005 9 7 4.2040 0.1137 -0.0004 10 6 5.2349 -0.0174 -0.8585 11 16 5.6766 1.2896 -1.8721 12 7 5.9181 -1.1776 -0.9188 13 6 7.0391 -1.3201 -1.8512 14 6 8.3152 -0.8956 -1.1712 15 1 8.2935 -0.5543 -0.1468 16 6 9.5104 -0.9430 -1.8568 17 7 10.6240 -0.5721 -1.2635 18 14 9.5479 -1.5327 -3.6290 19 1 9.3567 -0.3756 -4.5399 20 1 10.8580 -2.1728 -3.9100 21 1 8.4587 -2.5186 -3.8456 22 6 5.5405 -2.2959 -0.0510 23 6 4.5031 -3.1663 -0.7631 24 6 5.1376 -3.8086 -1.9983 25 6 4.0165 -4.2613 0.1883 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2148 2.3194 -0.0005 30 1 1.3340 4.5112 -0.0011 31 1 3.7902 4.6448 -0.0024 32 1 5.1397 2.5870 -0.0055 33 1 3.9926 -0.6038 0.6172 34 1 7.1223 -2.3612 -2.1628 35 1 6.8668 -0.6919 -2.7252 36 1 11.4649 -0.6051 -1.7461 37 1 6.4230 -2.8944 0.1753 38 1 5.1162 -1.9096 0.8757 39 1 3.6584 -2.5484 -1.0682 40 1 5.9821 -4.4264 -1.6931 41 1 4.3986 -4.4290 -2.5053 42 1 5.4841 -3.0285 -2.6760 43 1 3.5644 -3.8036 1.0682 44 1 3.2771 -4.8811 -0.3189 45 1 4.8612 -4.8791 0.4934 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016280172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:06 Heat of formation + Delta-G solvation = -4.163984 kcal Electronic energy + Delta-G solvation = -25789.277648 eV Core-core repulsion = 22319.048273 eV Total energy + Delta-G solvation = -3470.229375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66626 -40.47572 -38.53688 -37.00785 -35.78864 -34.45778 -31.36175 -31.07644 -29.87080 -28.16258 -28.08506 -27.95015 -25.29019 -23.48794 -23.12469 -22.49478 -21.20842 -19.77339 -19.19013 -18.94789 -18.43697 -17.14254 -16.96272 -16.61747 -16.44707 -16.32875 -15.77488 -15.63024 -15.12883 -14.95589 -14.89547 -14.41394 -14.24327 -13.95286 -13.79064 -13.54847 -13.16929 -13.02722 -12.98383 -12.81207 -12.61809 -12.46321 -12.31289 -12.14697 -12.02184 -11.99375 -11.95930 -11.80150 -11.73672 -11.66622 -10.79122 -10.44073 -9.65830 -8.97245 -8.75543 -8.30922 -8.13818 -6.33855 0.04973 0.52560 0.69871 0.99391 1.31861 1.40885 1.43540 1.67324 2.23882 2.32675 2.37131 2.85932 3.05782 3.61973 3.75867 3.94326 4.00569 4.04140 4.24819 4.31576 4.38820 4.43112 4.44901 4.51364 4.54702 4.61518 4.70985 4.77259 4.80288 4.84923 4.89106 4.93535 4.99259 5.15273 5.19833 5.21415 5.34223 5.38155 5.40765 5.44218 5.62604 5.66034 5.79366 5.89708 6.23963 6.32807 6.48331 6.63573 7.26685 8.86129 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.004806 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.379944 B = 5824.383592 C = 7369.427148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.121 3.879 4 C -0.205 4.205 5 C -0.068 4.068 6 C -0.161 4.161 7 C -0.051 4.051 8 C 0.073 3.927 9 N -0.615 5.615 10 C 0.577 3.423 11 S -0.730 6.730 12 N -0.529 5.529 13 C 0.222 3.778 14 C -0.517 4.517 15 H 0.029 0.971 16 C 0.023 3.977 17 N -0.943 5.943 18 Si 0.936 3.064 19 H -0.280 1.280 20 H -0.276 1.276 21 H -0.236 1.236 22 C 0.089 3.911 23 C -0.102 4.102 24 C -0.154 4.154 25 C -0.136 4.136 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.267 0.733 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.448 -4.229 5.718 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.073 3.927 4 C -0.225 4.225 5 C -0.086 4.086 6 C -0.181 4.181 7 C -0.073 4.073 8 C -0.021 4.021 9 N -0.244 5.244 10 C 0.215 3.785 11 S -0.598 6.598 12 N -0.232 5.232 13 C 0.100 3.900 14 C -0.556 4.556 15 H 0.047 0.953 16 C -0.176 4.176 17 N -0.583 5.583 18 Si 0.759 3.241 19 H -0.206 1.206 20 H -0.201 1.201 21 H -0.159 1.159 22 C -0.036 4.036 23 C -0.122 4.122 24 C -0.211 4.211 25 C -0.194 4.194 26 H 0.135 0.865 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.181 0.819 30 H 0.178 0.822 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.811 -3.746 5.014 25.589 hybrid contribution 0.690 -0.601 -0.007 0.916 sum -24.121 -4.347 5.007 25.016 Atomic orbital electron populations 1.23365 0.76004 1.05563 1.02529 1.86026 1.23812 1.26150 1.88755 1.18889 0.89502 0.86218 0.98097 1.21345 1.01149 0.90890 1.09092 1.21348 0.93845 0.98330 0.95098 1.21126 0.94653 0.97735 1.04621 1.21286 1.00942 0.91376 0.93722 1.16915 0.87195 0.85528 1.12416 1.41887 1.28202 1.19173 1.35142 1.21728 0.82652 0.88778 0.85341 1.93191 1.81518 1.32592 1.52486 1.47302 1.29132 1.09328 1.37401 1.20004 0.82137 0.98431 0.89400 1.21165 0.91341 1.44018 0.99090 0.95286 1.25583 0.94800 0.94893 1.02274 1.70023 0.99429 1.49494 1.39334 0.85895 0.78809 0.79474 0.79907 1.20640 1.20103 1.15930 1.22332 1.00868 0.87654 0.92726 1.21481 0.96586 0.97296 0.96811 1.21975 1.01371 1.00408 0.97363 1.21732 1.01766 0.97243 0.98617 0.86485 0.90875 0.91913 0.81888 0.82184 0.84513 0.86554 0.74287 0.91810 0.93536 0.92372 0.88406 0.89269 0.91578 0.91908 0.90790 0.94608 0.91315 0.90882 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.19 10.24 -93.38 -0.96 -8.15 16 3 C 0.12 3.06 6.70 22.60 0.15 3.21 16 4 C -0.21 -4.03 9.04 22.34 0.20 -3.83 16 5 C -0.07 -1.36 10.04 22.28 0.22 -1.13 16 6 C -0.16 -4.30 10.04 22.27 0.22 -4.08 16 7 C -0.05 -1.73 7.89 22.38 0.18 -1.56 16 8 C 0.07 2.35 5.89 38.19 0.23 2.58 16 9 N -0.62 -20.34 4.95 -189.62 -0.94 -21.28 16 10 C 0.58 24.04 7.56 179.06 1.35 25.40 16 11 S -0.73 -37.46 24.39 -56.49 -1.38 -38.84 16 12 N -0.53 -21.06 2.28 -714.17 -1.63 -22.69 16 13 C 0.22 10.57 3.06 85.63 0.26 10.83 16 14 C -0.52 -29.91 9.94 25.60 0.25 -29.65 16 15 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 16 C 0.02 1.35 5.47 84.65 0.46 1.82 16 17 N -0.94 -59.85 13.96 21.45 0.30 -59.55 16 18 Si 0.94 45.01 27.47 68.60 1.88 46.90 16 19 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 22 C 0.09 2.55 4.70 86.38 0.41 2.95 16 23 C -0.10 -2.32 3.13 -10.79 -0.03 -2.35 16 24 C -0.15 -3.86 8.18 71.98 0.59 -3.27 16 25 C -0.14 -2.12 9.19 71.98 0.66 -1.46 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.16 1.98 6.30 -2.91 -0.02 1.96 16 30 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.12 4.88 6.29 -4.84 -0.03 4.85 16 33 H 0.42 11.17 6.52 -92.71 -0.60 10.57 16 34 H 0.06 2.78 5.04 -2.39 -0.01 2.77 16 35 H 0.05 2.46 6.00 -2.39 -0.01 2.45 16 36 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.10 2.94 8.07 -2.39 -0.02 2.92 16 38 H 0.09 2.15 6.30 -2.39 -0.02 2.13 16 39 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.03 1.11 5.90 -2.39 -0.01 1.09 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -81.12 369.92 3.88 -77.24 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.32 Total: 25.58 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.27 Total: 0.79 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -2.27 Total: -103.51 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.96 Total: -8.15 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Atomic # 16 Polarization: -37.46 SS G_CDS: -1.38 Total: -38.84 kcal Total: -81.12 3.88 -77.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016280172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.078 kcal (2) G-P(sol) polarization free energy of solvation -81.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds