Wall clock time and date at job start Tue Mar 31 2020 14:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 117.00213 * 2 1 4 4 C 1.38812 * 120.01652 * 359.73117 * 3 2 1 5 5 C 1.38170 * 120.08570 * 179.69334 * 4 3 2 6 6 C 1.38169 * 120.12315 * 0.59951 * 5 4 3 7 7 C 1.38897 * 120.03694 * 359.68182 * 6 5 4 8 8 N 1.39890 * 120.03816 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99728 * 221.92249 * 8 7 6 10 10 S 1.71205 * 119.99735 * 5.56360 * 9 8 7 11 11 N 1.34773 * 120.00250 * 185.56141 * 9 8 7 12 12 C 1.46496 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47180 * 90.00382 * 12 11 9 14 14 H 1.08001 * 119.99492 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00384 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00388 * 179.97438 * 15 13 12 17 17 Si 1.86810 * 119.99782 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47149 * 89.99622 * 17 15 13 19 19 H 1.48498 * 109.46824 * 209.99949 * 17 15 13 20 20 H 1.48502 * 109.46752 * 329.99760 * 17 15 13 21 21 C 1.46504 * 119.99697 * 0.02562 * 11 9 8 22 22 C 1.53006 * 109.47056 * 90.00120 * 21 11 9 23 23 C 1.52995 * 109.46855 * 175.00183 * 22 21 11 24 24 C 1.53004 * 109.46679 * 294.99879 * 22 21 11 25 25 C 1.38579 * 120.02447 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47375 * 59.99354 * 1 2 3 27 27 H 1.09000 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46706 * 299.99606 * 1 2 3 29 29 H 1.08008 * 119.95729 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.93636 * 180.30125 * 5 4 3 31 31 H 1.07996 * 119.97594 * 179.69799 * 6 5 4 32 32 H 0.96999 * 120.00528 * 41.92329 * 8 7 6 33 33 H 1.08999 * 109.47072 * 209.99929 * 12 11 9 34 34 H 1.08997 * 109.47425 * 330.00022 * 12 11 9 35 35 H 0.97004 * 120.00278 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47055 * 209.99963 * 21 11 9 37 37 H 1.08998 * 109.47381 * 329.99872 * 21 11 9 38 38 H 1.08997 * 109.47051 * 54.99695 * 22 21 11 39 39 H 1.08997 * 109.47689 * 59.99903 * 23 22 21 40 40 H 1.09004 * 109.47024 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47184 * 299.99472 * 23 22 21 42 42 H 1.09003 * 109.46915 * 300.00025 * 24 22 21 43 43 H 1.09001 * 109.47238 * 60.00234 * 24 22 21 44 44 H 1.09004 * 109.46743 * 180.02562 * 24 22 21 45 45 H 1.07999 * 120.05955 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 -0.0056 5 6 1.9162 3.6071 0.0008 6 6 3.2957 3.6841 0.0003 7 6 4.0569 2.5222 0.0000 8 7 5.4536 2.6001 0.0001 9 6 6.1748 1.7706 -0.7799 10 16 5.3819 0.7206 -1.8754 11 7 7.5200 1.7678 -0.6977 12 6 8.3038 0.8658 -1.5451 13 6 8.6363 1.5575 -2.8421 14 1 8.2973 2.5677 -3.0177 15 6 9.3733 0.9006 -3.8045 16 7 9.6631 1.5040 -4.9365 17 14 9.9591 -0.8471 -3.5011 18 1 8.9335 -1.8044 -3.9875 19 1 11.2337 -1.0752 -4.2282 20 1 10.1759 -1.0508 -2.0461 21 6 8.1983 2.6660 0.2401 22 6 8.3699 1.9615 1.5875 23 6 9.1871 2.8503 2.5272 24 6 6.9945 1.6970 2.2034 25 6 3.4299 1.2839 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2118 2.3183 -0.0104 30 1 1.3259 4.5115 0.0013 31 1 3.7824 4.6482 0.0003 32 1 5.9031 3.2510 0.5615 33 1 9.2260 0.5944 -1.0313 34 1 7.7244 -0.0341 -1.7514 35 1 10.1813 1.0417 -5.6138 36 1 9.1774 2.9339 -0.1571 37 1 7.6018 3.5682 0.3752 38 1 8.8897 1.0150 1.4390 39 1 8.6674 3.7967 2.6757 40 1 9.3090 2.3486 3.4872 41 1 10.1670 3.0387 2.0884 42 1 6.4748 2.6435 2.3518 43 1 6.4123 1.0638 1.5338 44 1 7.1168 1.1955 3.1634 45 1 4.0194 0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016280203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:10 Heat of formation + Delta-G solvation = 20.214567 kcal Electronic energy + Delta-G solvation = -25525.243264 eV Core-core repulsion = 22056.071022 eV Total energy + Delta-G solvation = -3469.172242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42547 -39.43933 -37.64569 -35.39576 -34.56378 -32.43236 -30.59349 -29.59592 -28.17597 -27.31584 -27.18469 -26.75894 -23.65630 -22.55557 -21.69656 -21.43729 -19.71120 -18.69415 -17.87662 -17.00205 -16.45614 -16.13190 -15.89752 -15.63943 -15.09212 -14.97326 -14.75654 -14.47179 -13.96916 -13.82595 -13.40491 -13.01960 -12.91470 -12.51088 -12.41521 -12.34573 -12.24677 -11.96990 -11.91862 -11.70526 -11.48825 -11.19102 -11.02665 -10.91290 -10.87999 -10.78029 -10.58598 -10.32263 -10.21570 -9.61602 -9.15693 -8.59492 -8.23756 -7.89847 -7.02096 -6.27764 -6.09128 -4.08789 1.23606 1.60627 2.09538 2.54762 3.10160 3.30048 3.34393 3.41025 3.44462 3.67823 3.91252 4.39943 4.65260 4.72289 4.85598 4.93023 5.05797 5.10011 5.12844 5.16175 5.23653 5.24131 5.41809 5.43440 5.44778 5.47420 5.63449 5.65179 5.73028 5.80107 5.84573 5.96060 6.13761 6.16189 6.25413 6.34791 6.37565 6.52574 6.56528 6.75852 6.89516 7.12755 7.38316 7.50914 7.54869 7.74016 8.41966 8.90172 9.48436 11.03873 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.004420 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.109354 B = 6333.027809 C = 7575.179164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.131 3.869 4 C -0.214 4.214 5 C -0.078 4.078 6 C -0.168 4.168 7 C 0.186 3.814 8 N -0.651 5.651 9 C 0.556 3.444 10 S -0.622 6.622 11 N -0.527 5.527 12 C 0.209 3.791 13 C -0.522 4.522 14 H 0.074 0.926 15 C 0.081 3.919 16 N -0.893 5.893 17 Si 0.874 3.126 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.095 3.905 22 C -0.116 4.116 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.104 4.104 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.402 0.598 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.265 0.735 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.499 4.193 18.172 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.084 3.916 4 C -0.233 4.233 5 C -0.097 4.097 6 C -0.190 4.190 7 C 0.091 3.909 8 N -0.282 5.282 9 C 0.199 3.801 10 S -0.488 6.488 11 N -0.229 5.229 12 C 0.089 3.911 13 C -0.561 4.561 14 H 0.092 0.908 15 C -0.122 4.122 16 N -0.531 5.531 17 Si 0.700 3.300 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.031 4.031 22 C -0.136 4.136 23 C -0.201 4.201 24 C -0.211 4.211 25 C -0.127 4.127 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.243 0.757 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.611 3.239 17.218 21.018 hybrid contribution 0.797 0.313 0.574 1.031 sum -10.814 3.552 17.792 21.122 Atomic orbital electron populations 1.23003 0.78938 1.03615 1.01030 1.86107 1.20799 1.26875 1.88813 1.18642 0.91641 0.84048 0.97233 1.21159 0.99712 0.92400 1.10042 1.20531 0.93486 0.96917 0.98801 1.20755 0.94009 0.96706 1.07510 1.16949 0.80743 0.93316 0.99853 1.42496 1.04844 1.37043 1.43823 1.22251 0.84983 0.87030 0.85822 1.93243 1.69270 1.44706 1.41568 1.47478 1.02295 1.37076 1.36057 1.20322 0.90051 0.90733 0.90024 1.20986 1.34261 1.02238 0.98622 0.90809 1.24712 0.95378 0.97589 0.94550 1.69872 1.38966 1.37666 1.06617 0.86894 0.78556 0.85830 0.78684 1.19385 1.21175 1.19230 1.21985 1.00094 0.91995 0.89070 1.21601 0.97197 1.00496 0.94334 1.21762 0.99989 0.99315 0.99008 1.22040 0.96428 1.01418 1.01207 1.20542 0.91673 0.98727 1.01772 0.92770 0.88544 0.92989 0.85803 0.85741 0.86043 0.75710 0.94604 0.91206 0.92460 0.87886 0.91430 0.89957 0.92621 0.92297 0.92079 0.93027 0.92122 0.92202 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.48 10.49 -19.43 -0.20 -4.68 16 3 C 0.13 1.95 6.68 -39.24 -0.26 1.69 16 4 C -0.21 -2.60 9.04 -39.39 -0.36 -2.96 16 5 C -0.08 -0.90 10.03 -39.63 -0.40 -1.29 16 6 C -0.17 -2.16 9.97 -39.36 -0.39 -2.55 16 7 C 0.19 2.84 5.90 -83.73 -0.49 2.34 16 8 N -0.65 -9.88 3.80 -11.42 -0.04 -9.92 16 9 C 0.56 10.81 6.03 -86.92 -0.52 10.29 16 10 S -0.62 -15.07 24.46 -107.50 -2.63 -17.70 16 11 N -0.53 -9.99 2.34 -177.08 -0.42 -10.41 16 12 C 0.21 4.83 3.99 -5.19 -0.02 4.80 16 13 C -0.52 -14.49 9.94 -34.44 -0.34 -14.83 16 14 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16 15 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 16 N -0.89 -27.33 13.96 55.43 0.77 -26.55 16 17 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 21 C 0.10 1.33 4.94 -4.04 -0.02 1.31 16 22 C -0.12 -1.34 3.13 -90.62 -0.28 -1.62 16 23 C -0.14 -1.27 9.19 37.15 0.34 -0.92 16 24 C -0.15 -1.70 7.76 37.16 0.29 -1.41 16 25 C -0.10 -1.73 7.79 -39.25 -0.31 -2.04 16 26 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.38 7.67 -51.93 -0.40 -0.01 16 29 H 0.12 1.17 6.29 -52.48 -0.33 0.84 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.40 4.86 4.96 -40.82 -0.20 4.66 16 33 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 34 H 0.07 1.76 6.01 -51.93 -0.31 1.45 16 35 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.10 1.51 8.07 -51.93 -0.42 1.09 16 37 H 0.07 0.80 6.29 -51.93 -0.33 0.47 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.49 7.04 -51.93 -0.37 0.12 16 43 H 0.06 0.83 6.03 -51.93 -0.31 0.52 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.15 2.86 6.27 -50.01 -0.31 2.55 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -34.91 367.69 -10.24 -45.15 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.72 Total: 5.53 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.87 Total: -3.70 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.32 Total: -46.88 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.20 Total: -4.68 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -15.07 SS G_CDS: -2.63 Total: -17.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.91 -10.24 -45.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016280203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.369 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds