Wall clock time and date at job start Tue Mar 31 2020 14:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 117.00213 * 2 1 4 4 C 1.38812 * 120.01652 * 359.73117 * 3 2 1 5 5 C 1.38170 * 120.08570 * 179.69334 * 4 3 2 6 6 C 1.38169 * 120.12315 * 0.59951 * 5 4 3 7 7 C 1.38897 * 120.03694 * 359.68182 * 6 5 4 8 8 N 1.39890 * 120.03816 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99728 * 221.92249 * 8 7 6 10 10 S 1.71205 * 119.99735 * 5.56360 * 9 8 7 11 11 N 1.34773 * 120.00250 * 185.56141 * 9 8 7 12 12 C 1.46496 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47180 * 90.00382 * 12 11 9 14 14 H 1.08001 * 119.99492 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00384 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00388 * 179.97438 * 15 13 12 17 17 Si 1.86810 * 119.99782 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47149 * 89.99622 * 17 15 13 19 19 H 1.48498 * 109.46824 * 209.99949 * 17 15 13 20 20 H 1.48502 * 109.46752 * 329.99760 * 17 15 13 21 21 C 1.46504 * 119.99697 * 0.02562 * 11 9 8 22 22 C 1.53006 * 109.47056 * 90.00120 * 21 11 9 23 23 C 1.52995 * 109.46855 * 175.00183 * 22 21 11 24 24 C 1.53004 * 109.46679 * 294.99879 * 22 21 11 25 25 C 1.38579 * 120.02447 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47375 * 59.99354 * 1 2 3 27 27 H 1.09000 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46706 * 299.99606 * 1 2 3 29 29 H 1.08008 * 119.95729 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.93636 * 180.30125 * 5 4 3 31 31 H 1.07996 * 119.97594 * 179.69799 * 6 5 4 32 32 H 0.96999 * 120.00528 * 41.92329 * 8 7 6 33 33 H 1.08999 * 109.47072 * 209.99929 * 12 11 9 34 34 H 1.08997 * 109.47425 * 330.00022 * 12 11 9 35 35 H 0.97004 * 120.00278 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47055 * 209.99963 * 21 11 9 37 37 H 1.08998 * 109.47381 * 329.99872 * 21 11 9 38 38 H 1.08997 * 109.47051 * 54.99695 * 22 21 11 39 39 H 1.08997 * 109.47689 * 59.99903 * 23 22 21 40 40 H 1.09004 * 109.47024 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47184 * 299.99472 * 23 22 21 42 42 H 1.09003 * 109.46915 * 300.00025 * 24 22 21 43 43 H 1.09001 * 109.47238 * 60.00234 * 24 22 21 44 44 H 1.09004 * 109.46743 * 180.02562 * 24 22 21 45 45 H 1.07999 * 120.05955 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 -0.0056 5 6 1.9162 3.6071 0.0008 6 6 3.2957 3.6841 0.0003 7 6 4.0569 2.5222 0.0000 8 7 5.4536 2.6001 0.0001 9 6 6.1748 1.7706 -0.7799 10 16 5.3819 0.7206 -1.8754 11 7 7.5200 1.7678 -0.6977 12 6 8.3038 0.8658 -1.5451 13 6 8.6363 1.5575 -2.8421 14 1 8.2973 2.5677 -3.0177 15 6 9.3733 0.9006 -3.8045 16 7 9.6631 1.5040 -4.9365 17 14 9.9591 -0.8471 -3.5011 18 1 8.9335 -1.8044 -3.9875 19 1 11.2337 -1.0752 -4.2282 20 1 10.1759 -1.0508 -2.0461 21 6 8.1983 2.6660 0.2401 22 6 8.3699 1.9615 1.5875 23 6 9.1871 2.8503 2.5272 24 6 6.9945 1.6970 2.2034 25 6 3.4299 1.2839 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2118 2.3183 -0.0104 30 1 1.3259 4.5115 0.0013 31 1 3.7824 4.6482 0.0003 32 1 5.9031 3.2510 0.5615 33 1 9.2260 0.5944 -1.0313 34 1 7.7244 -0.0341 -1.7514 35 1 10.1813 1.0417 -5.6138 36 1 9.1774 2.9339 -0.1571 37 1 7.6018 3.5682 0.3752 38 1 8.8897 1.0150 1.4390 39 1 8.6674 3.7967 2.6757 40 1 9.3090 2.3486 3.4872 41 1 10.1670 3.0387 2.0884 42 1 6.4748 2.6435 2.3518 43 1 6.4123 1.0638 1.5338 44 1 7.1168 1.1955 3.1634 45 1 4.0194 0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016280203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:10 Heat of formation + Delta-G solvation = -1.152857 kcal Electronic energy + Delta-G solvation = -25526.169825 eV Core-core repulsion = 22056.071022 eV Total energy + Delta-G solvation = -3470.098803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65737 -40.62808 -38.77406 -36.48541 -35.97797 -34.45602 -31.65330 -30.98730 -29.73467 -28.22127 -28.00278 -27.98399 -25.30200 -23.87692 -22.88377 -22.73029 -20.86617 -19.89453 -19.23148 -19.10853 -17.86089 -17.18545 -16.95540 -16.56283 -16.53682 -16.23163 -16.17731 -15.71596 -15.57249 -14.80437 -14.58367 -14.42820 -14.15736 -13.95698 -13.75119 -13.52980 -13.21548 -13.09497 -12.93165 -12.89036 -12.71925 -12.59522 -12.45363 -12.17514 -11.96734 -11.91402 -11.85659 -11.84725 -11.74323 -11.67751 -10.81263 -10.52753 -9.48579 -9.05276 -8.83265 -8.31910 -8.06853 -6.35425 -0.01548 0.56280 0.66680 1.02546 1.31788 1.41235 1.43502 1.61313 2.20392 2.32247 2.56977 2.85099 3.04943 3.62761 3.73059 3.95276 3.99809 4.15539 4.18726 4.26585 4.31398 4.43415 4.45570 4.47233 4.53244 4.58975 4.65477 4.72442 4.76351 4.79826 4.83906 4.90368 4.98079 5.15945 5.19050 5.26739 5.29307 5.37533 5.39253 5.42144 5.49446 5.62968 5.68276 5.95841 6.22293 6.36031 6.56840 6.62299 7.25508 8.85102 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.004420 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.109354 B = 6333.027809 C = 7575.179164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.116 3.884 4 C -0.205 4.205 5 C -0.070 4.070 6 C -0.165 4.165 7 C 0.160 3.840 8 N -0.622 5.622 9 C 0.582 3.418 10 S -0.730 6.730 11 N -0.528 5.528 12 C 0.221 3.779 13 C -0.518 4.518 14 H 0.030 0.970 15 C 0.022 3.978 16 N -0.942 5.942 17 Si 0.938 3.062 18 H -0.282 1.282 19 H -0.276 1.276 20 H -0.236 1.236 21 C 0.087 3.913 22 C -0.108 4.108 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.129 4.129 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.420 0.580 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.267 0.733 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.074 0.926 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.368 5.917 21.306 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C 0.069 3.931 4 C -0.224 4.224 5 C -0.089 4.089 6 C -0.186 4.186 7 C 0.066 3.934 8 N -0.253 5.253 9 C 0.220 3.780 10 S -0.598 6.598 11 N -0.229 5.229 12 C 0.099 3.901 13 C -0.557 4.557 14 H 0.048 0.952 15 C -0.176 4.176 16 N -0.583 5.583 17 Si 0.762 3.238 18 H -0.208 1.208 19 H -0.201 1.201 20 H -0.159 1.159 21 C -0.038 4.038 22 C -0.128 4.128 23 C -0.194 4.194 24 C -0.208 4.208 25 C -0.152 4.152 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.092 0.908 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.166 0.834 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.502 5.022 20.442 24.483 hybrid contribution 0.906 -0.090 -0.309 0.962 sum -11.596 4.931 20.133 23.751 Atomic orbital electron populations 1.23327 0.76402 1.05287 1.02412 1.86070 1.23558 1.27261 1.88880 1.18834 0.91336 0.85298 0.97598 1.21549 1.01231 0.91577 1.08074 1.21050 0.93180 0.98125 0.96502 1.21096 0.94709 0.96584 1.06190 1.17210 0.80374 0.93989 1.01822 1.42274 1.05135 1.35629 1.42250 1.21594 0.84956 0.86396 0.85022 1.93418 1.71163 1.49095 1.46161 1.47378 1.02027 1.37264 1.36260 1.19907 0.90903 0.90263 0.88992 1.21132 1.33278 1.00565 1.00675 0.95195 1.25601 0.95766 1.02041 0.94211 1.70018 1.40539 1.39760 1.07939 0.85860 0.77742 0.79734 0.80490 1.20781 1.20132 1.15871 1.22402 0.99895 0.92293 0.89171 1.21542 0.97824 1.00146 0.93266 1.21730 0.99564 0.99527 0.98614 1.22011 0.95782 1.01937 1.01041 1.20398 0.92752 0.98097 1.03990 0.91990 0.87001 0.90761 0.82655 0.81653 0.83450 0.73538 0.92284 0.93271 0.92346 0.88246 0.88687 0.91490 0.90857 0.91004 0.92027 0.91043 0.95392 0.90732 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -10.00 10.49 -92.43 -0.97 -10.97 16 3 C 0.12 3.44 6.68 22.49 0.15 3.59 16 4 C -0.21 -4.45 9.04 22.39 0.20 -4.25 16 5 C -0.07 -1.34 10.03 22.24 0.22 -1.11 16 6 C -0.16 -3.77 9.97 22.41 0.22 -3.54 16 7 C 0.16 4.80 5.90 38.15 0.23 5.03 16 8 N -0.62 -18.54 3.80 -190.04 -0.72 -19.27 16 9 C 0.58 23.23 6.03 179.06 1.08 24.31 16 10 S -0.73 -37.68 24.46 -56.49 -1.38 -39.07 16 11 N -0.53 -20.20 2.34 -714.16 -1.67 -21.87 16 12 C 0.22 10.40 3.99 85.63 0.34 10.74 16 13 C -0.52 -29.71 9.94 25.60 0.25 -29.45 16 14 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 15 C 0.02 1.31 5.47 84.65 0.46 1.78 16 16 N -0.94 -59.72 13.96 21.44 0.30 -59.42 16 17 Si 0.94 44.90 27.47 68.60 1.88 46.79 16 18 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.24 -9.96 6.54 99.48 0.65 -9.30 16 21 C 0.09 2.29 4.94 86.38 0.43 2.72 16 22 C -0.11 -2.24 3.13 -10.79 -0.03 -2.27 16 23 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 24 C -0.15 -3.02 7.76 71.98 0.56 -2.46 16 25 C -0.13 -4.48 7.79 22.48 0.18 -4.30 16 26 H 0.06 0.94 7.65 -2.39 -0.02 0.92 16 27 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 0.91 7.67 -2.38 -0.02 0.89 16 29 H 0.16 2.32 6.29 -2.91 -0.02 2.30 16 30 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 31 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.42 9.23 4.96 -92.71 -0.46 8.77 16 33 H 0.06 2.52 7.13 -2.39 -0.02 2.51 16 34 H 0.05 2.57 6.01 -2.39 -0.01 2.55 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.10 2.77 8.07 -2.39 -0.02 2.75 16 37 H 0.10 1.97 6.29 -2.39 -0.02 1.96 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.07 1.12 7.04 -2.39 -0.02 1.10 16 43 H 0.03 0.75 6.03 -2.39 -0.01 0.73 16 44 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 45 H 0.12 4.79 6.27 -4.49 -0.03 4.76 16 Total: -1.00 -83.93 367.69 3.97 -79.97 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.47 Total: 22.88 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 6.06 Total: 0.96 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -2.10 Total: -100.55 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.97 Total: -10.97 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Atomic # 16 Polarization: -37.68 SS G_CDS: -1.38 Total: -39.07 kcal Total: -83.93 3.97 -79.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016280203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.817 kcal (2) G-P(sol) polarization free energy of solvation -83.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds