Wall clock time and date at job start Tue Mar 31 2020 14:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47074 * 2 1 4 4 C 1.53004 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47102 * 180.02562 * 4 3 2 6 6 C 1.46903 * 110.99709 * 293.95274 * 5 4 3 7 7 C 1.46895 * 111.00107 * 170.00147 * 5 4 3 8 8 C 1.50707 * 109.47281 * 189.99812 * 7 5 4 9 9 O 1.21297 * 119.99563 * 359.97438 * 8 7 5 10 10 N 1.34772 * 120.00002 * 179.97438 * 8 7 5 11 11 C 1.39942 * 119.99799 * 175.96006 * 10 8 7 12 12 C 1.38681 * 120.11707 * 34.38985 * 11 10 8 13 13 C 1.38215 * 120.01772 * 179.97438 * 12 11 10 14 14 C 1.38392 * 120.25617 * 0.02738 * 13 12 11 15 15 C 1.38091 * 120.22500 * 359.97283 * 14 13 12 16 16 C 1.38989 * 119.97664 * 0.02562 * 15 14 13 17 17 S 1.76199 * 120.12408 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99925 * 353.11271 * 17 16 15 19 19 H 1.08000 * 119.99974 * 5.09920 * 18 17 16 20 20 C 1.38688 * 119.99678 * 185.09953 * 18 17 16 21 21 N 1.31653 * 120.00309 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99717 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46805 * 90.00314 * 22 20 18 24 24 H 1.48496 * 109.47110 * 209.99993 * 22 20 18 25 25 H 1.48499 * 109.47220 * 330.00267 * 22 20 18 26 26 H 1.08996 * 109.47098 * 300.00141 * 1 2 3 27 27 H 1.09004 * 109.47094 * 60.00121 * 1 2 3 28 28 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47098 * 239.99859 * 2 1 3 30 30 H 1.09007 * 109.46868 * 120.00354 * 2 1 3 31 31 H 1.09004 * 109.47091 * 60.00240 * 3 2 1 32 32 H 1.09004 * 109.47061 * 299.99899 * 3 2 1 33 33 H 1.08996 * 109.47098 * 59.99859 * 4 3 2 34 34 H 1.08999 * 109.46651 * 299.99732 * 4 3 2 35 35 H 1.08998 * 109.47007 * 296.04689 * 6 5 4 36 36 H 1.08998 * 109.47698 * 56.04791 * 6 5 4 37 37 H 1.09003 * 109.47152 * 176.04829 * 6 5 4 38 38 H 1.08998 * 109.47520 * 69.99811 * 7 5 4 39 39 H 1.09003 * 109.47119 * 309.99325 * 7 5 4 40 40 H 0.96998 * 120.00320 * 355.95432 * 10 8 7 41 41 H 1.08000 * 119.98619 * 0.26383 * 12 11 10 42 42 H 1.08003 * 119.87617 * 179.97438 * 13 12 11 43 43 H 1.07991 * 119.89241 * 179.97438 * 14 13 12 44 44 H 1.08001 * 120.00955 * 180.02562 * 15 14 13 45 45 H 0.97003 * 119.99851 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.7107 3.5096 -1.2521 7 6 5.5084 2.8735 0.2400 8 6 5.9332 4.2997 0.4779 9 8 5.1101 5.1902 0.4507 10 7 7.2276 4.5857 0.7208 11 6 7.6363 5.9171 0.8578 12 6 6.7906 6.8479 1.4422 13 6 7.1965 8.1622 1.5769 14 6 8.4458 8.5555 1.1299 15 6 9.2962 7.6372 0.5464 16 6 8.8977 6.3131 0.4062 17 16 9.9799 5.1379 -0.3372 18 6 11.2722 6.2087 -0.8738 19 1 11.2466 7.2573 -0.6164 20 6 12.3224 5.7050 -1.6267 21 7 12.3534 4.4269 -1.9409 22 14 13.6921 6.8403 -2.1962 23 1 14.7675 6.8708 -1.1725 24 1 14.2457 6.3424 -3.4810 25 1 13.1520 8.2103 -2.3877 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.2178 3.0220 -2.0846 36 1 2.6326 3.4607 -1.4045 37 1 4.0229 4.5526 -1.1971 38 1 6.0328 2.4785 -0.6301 39 1 5.7517 2.2712 1.1153 40 1 7.8760 3.8687 0.8008 41 1 5.8164 6.5447 1.7964 42 1 6.5359 8.8854 2.0320 43 1 8.7568 9.5841 1.2377 44 1 10.2705 7.9478 0.1991 45 1 13.0878 4.0747 -2.4678 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023991765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:22 Heat of formation + Delta-G solvation = -13.076080 kcal Electronic energy + Delta-G solvation = -24130.221327 eV Core-core repulsion = 20659.605494 eV Total energy + Delta-G solvation = -3470.615833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15586 -38.26303 -37.17916 -34.70443 -34.25419 -32.76897 -30.35061 -30.11442 -28.98337 -27.62989 -25.89861 -25.24106 -22.63456 -22.21055 -21.51048 -20.88665 -19.88941 -18.36502 -16.98747 -16.75728 -16.10185 -16.03385 -15.60173 -15.24604 -14.98473 -14.69307 -14.49813 -14.11171 -13.73725 -13.63694 -13.18683 -13.04717 -12.93026 -12.89137 -12.55511 -12.36129 -11.83038 -11.68508 -11.65596 -11.50372 -11.28271 -11.24072 -11.21450 -11.13633 -11.07555 -10.68344 -10.40453 -10.03862 -9.75905 -9.56830 -9.31661 -8.79594 -8.64976 -8.39954 -7.68992 -6.54556 -6.54071 -4.25343 1.88160 2.09782 2.89764 3.01437 3.08992 3.15372 3.20394 3.36532 3.94816 3.97583 4.44511 4.62600 4.72612 4.81300 4.88598 4.89979 5.04294 5.08188 5.15761 5.22890 5.31772 5.40889 5.49461 5.52511 5.61287 5.63893 5.65427 5.68278 5.71745 5.84094 5.89816 6.01358 6.07733 6.16712 6.23741 6.25934 6.58545 6.77679 6.90741 6.92348 6.96135 7.14120 7.22113 7.44165 7.69176 7.80884 8.11818 8.47379 8.94291 10.52744 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.002712 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.672632 B =10323.812309 C =11666.507110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.116 4.116 4 C 0.054 3.946 5 N -0.524 5.524 6 C 0.015 3.985 7 C 0.036 3.964 8 C 0.514 3.486 9 O -0.512 6.512 10 N -0.660 5.660 11 C 0.124 3.876 12 C -0.101 4.101 13 C -0.149 4.149 14 C -0.115 4.115 15 C -0.131 4.131 16 C -0.103 4.103 17 S 0.031 5.969 18 C -0.545 4.545 19 H 0.095 0.905 20 C 0.077 3.923 21 N -0.866 5.866 22 Si 0.924 3.076 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.021 0.979 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.409 0.591 41 H 0.131 0.869 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.402 -6.288 4.122 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.074 4.074 5 N -0.248 5.248 6 C -0.133 4.133 7 C -0.096 4.096 8 C 0.300 3.700 9 O -0.387 6.387 10 N -0.305 5.305 11 C 0.022 3.978 12 C -0.123 4.123 13 C -0.173 4.173 14 C -0.135 4.135 15 C -0.157 4.157 16 C -0.220 4.220 17 S 0.286 5.714 18 C -0.692 4.692 19 H 0.112 0.888 20 C -0.133 4.133 21 N -0.500 5.500 22 Si 0.750 3.250 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.192 1.192 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.246 0.754 41 H 0.149 0.851 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.043 -6.982 4.103 17.971 hybrid contribution 1.808 1.175 -0.934 2.350 sum -14.235 -5.807 3.169 15.697 Atomic orbital electron populations 1.21758 0.95793 1.01453 1.01908 1.21496 0.95954 0.96793 1.01948 1.21625 0.94321 0.96498 1.02984 1.22192 0.95883 0.88440 1.00866 1.61657 1.11350 1.15457 1.36325 1.22631 1.01184 1.01207 0.88291 1.21972 0.89934 0.94516 1.03140 1.20502 0.81834 0.91167 0.76488 1.90637 1.50937 1.48057 1.49087 1.43342 1.09579 1.07199 1.70380 1.17142 0.93683 0.84075 1.02915 1.20977 0.99613 0.92934 0.98775 1.20759 0.96731 0.95620 1.04166 1.20970 0.94337 0.98707 0.99530 1.21287 1.00921 0.92024 1.01463 1.22530 0.97708 0.99645 1.02154 1.83073 1.15206 1.09577 1.63594 1.23269 1.08384 0.97708 1.39826 0.88765 1.25089 0.98084 0.95815 0.94322 1.69996 1.31959 1.12445 1.35576 0.86053 0.80430 0.80250 0.78301 1.19878 1.20510 1.19212 0.92651 0.92800 0.92884 0.92187 0.91962 0.90990 0.91808 0.94756 0.90731 0.96042 0.91301 0.89168 0.91329 0.87747 0.75448 0.85115 0.87011 0.87113 0.84476 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.99 5.14 -26.73 -0.14 -1.13 16 4 C 0.05 0.51 4.96 -3.83 -0.02 0.49 16 5 N -0.52 -6.36 4.50 -244.37 -1.10 -7.46 16 6 C 0.01 0.18 9.01 60.07 0.54 0.72 16 7 C 0.04 0.43 5.45 -4.98 -0.03 0.40 16 8 C 0.51 8.17 7.40 -10.98 -0.08 8.09 16 9 O -0.51 -9.52 11.73 5.54 0.07 -9.45 16 10 N -0.66 -11.14 5.02 -9.70 -0.05 -11.19 16 11 C 0.12 2.44 6.32 -83.44 -0.53 1.91 16 12 C -0.10 -1.90 8.69 -39.43 -0.34 -2.24 16 13 C -0.15 -2.60 10.04 -39.53 -0.40 -3.00 16 14 C -0.11 -2.07 10.03 -39.58 -0.40 -2.47 16 15 C -0.13 -2.75 9.26 -39.36 -0.36 -3.11 16 16 C -0.10 -2.25 6.12 -38.75 -0.24 -2.49 16 17 S 0.03 0.76 20.53 -107.50 -2.21 -1.45 16 18 C -0.54 -14.38 9.07 30.90 0.28 -14.10 16 19 H 0.09 2.40 4.83 -52.49 -0.25 2.14 16 20 C 0.08 2.02 5.49 -17.46 -0.10 1.93 16 21 N -0.87 -23.75 13.22 55.48 0.73 -23.02 16 22 Si 0.92 20.17 29.55 -169.99 -5.02 15.15 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.56 6.47 -51.93 -0.34 0.22 16 33 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.75 6.30 -51.93 -0.33 0.43 16 37 H 0.09 1.37 5.88 -51.93 -0.31 1.06 16 38 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.10 1.02 7.93 -51.93 -0.41 0.61 16 40 H 0.41 6.30 7.96 -40.82 -0.32 5.97 16 41 H 0.13 2.42 6.20 -52.49 -0.33 2.10 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.14 2.97 4.95 -52.49 -0.26 2.71 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -29.93 374.82 -10.27 -40.19 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.74 Total: 8.22 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.59 Total: -16.64 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.41 Total: -41.67 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.45 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.21 Total: -1.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.93 -10.27 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023991765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.115 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds