Wall clock time and date at job start Tue Mar 31 2020 14:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47074 * 2 1 4 4 C 1.53004 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47102 * 180.02562 * 4 3 2 6 6 C 1.46903 * 110.99709 * 293.95274 * 5 4 3 7 7 C 1.46895 * 111.00107 * 170.00147 * 5 4 3 8 8 C 1.50707 * 109.47281 * 189.99812 * 7 5 4 9 9 O 1.21297 * 119.99563 * 359.97438 * 8 7 5 10 10 N 1.34772 * 120.00002 * 179.97438 * 8 7 5 11 11 C 1.39942 * 119.99799 * 175.96006 * 10 8 7 12 12 C 1.38681 * 120.11707 * 34.38985 * 11 10 8 13 13 C 1.38215 * 120.01772 * 179.97438 * 12 11 10 14 14 C 1.38392 * 120.25617 * 0.02738 * 13 12 11 15 15 C 1.38091 * 120.22500 * 359.97283 * 14 13 12 16 16 C 1.38989 * 119.97664 * 0.02562 * 15 14 13 17 17 S 1.76199 * 120.12408 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99925 * 353.11271 * 17 16 15 19 19 H 1.08000 * 119.99974 * 5.09920 * 18 17 16 20 20 C 1.38688 * 119.99678 * 185.09953 * 18 17 16 21 21 N 1.31653 * 120.00309 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99717 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46805 * 90.00314 * 22 20 18 24 24 H 1.48496 * 109.47110 * 209.99993 * 22 20 18 25 25 H 1.48499 * 109.47220 * 330.00267 * 22 20 18 26 26 H 1.08996 * 109.47098 * 300.00141 * 1 2 3 27 27 H 1.09004 * 109.47094 * 60.00121 * 1 2 3 28 28 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47098 * 239.99859 * 2 1 3 30 30 H 1.09007 * 109.46868 * 120.00354 * 2 1 3 31 31 H 1.09004 * 109.47091 * 60.00240 * 3 2 1 32 32 H 1.09004 * 109.47061 * 299.99899 * 3 2 1 33 33 H 1.08996 * 109.47098 * 59.99859 * 4 3 2 34 34 H 1.08999 * 109.46651 * 299.99732 * 4 3 2 35 35 H 1.08998 * 109.47007 * 296.04689 * 6 5 4 36 36 H 1.08998 * 109.47698 * 56.04791 * 6 5 4 37 37 H 1.09003 * 109.47152 * 176.04829 * 6 5 4 38 38 H 1.08998 * 109.47520 * 69.99811 * 7 5 4 39 39 H 1.09003 * 109.47119 * 309.99325 * 7 5 4 40 40 H 0.96998 * 120.00320 * 355.95432 * 10 8 7 41 41 H 1.08000 * 119.98619 * 0.26383 * 12 11 10 42 42 H 1.08003 * 119.87617 * 179.97438 * 13 12 11 43 43 H 1.07991 * 119.89241 * 179.97438 * 14 13 12 44 44 H 1.08001 * 120.00955 * 180.02562 * 15 14 13 45 45 H 0.97003 * 119.99851 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.7107 3.5096 -1.2521 7 6 5.5084 2.8735 0.2400 8 6 5.9332 4.2997 0.4779 9 8 5.1101 5.1902 0.4507 10 7 7.2276 4.5857 0.7208 11 6 7.6363 5.9171 0.8578 12 6 6.7906 6.8479 1.4422 13 6 7.1965 8.1622 1.5769 14 6 8.4458 8.5555 1.1299 15 6 9.2962 7.6372 0.5464 16 6 8.8977 6.3131 0.4062 17 16 9.9799 5.1379 -0.3372 18 6 11.2722 6.2087 -0.8738 19 1 11.2466 7.2573 -0.6164 20 6 12.3224 5.7050 -1.6267 21 7 12.3534 4.4269 -1.9409 22 14 13.6921 6.8403 -2.1962 23 1 14.7675 6.8708 -1.1725 24 1 14.2457 6.3424 -3.4810 25 1 13.1520 8.2103 -2.3877 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.2178 3.0220 -2.0846 36 1 2.6326 3.4607 -1.4045 37 1 4.0229 4.5526 -1.1971 38 1 6.0328 2.4785 -0.6301 39 1 5.7517 2.2712 1.1153 40 1 7.8760 3.8687 0.8008 41 1 5.8164 6.5447 1.7964 42 1 6.5359 8.8854 2.0320 43 1 8.7568 9.5841 1.2377 44 1 10.2705 7.9478 0.1991 45 1 13.0878 4.0747 -2.4678 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023991765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:21 Heat of formation + Delta-G solvation = -30.294726 kcal Electronic energy + Delta-G solvation = -24130.967983 eV Core-core repulsion = 20659.605494 eV Total energy + Delta-G solvation = -3471.362489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48536 -39.53714 -38.26714 -35.75701 -35.31643 -34.72741 -31.89691 -31.26237 -29.94515 -28.72981 -27.85681 -26.13527 -23.95137 -23.55505 -22.52826 -21.63009 -21.20814 -20.12179 -18.40338 -18.12759 -17.56830 -17.04340 -16.95236 -16.57492 -16.15908 -15.89368 -15.59845 -15.46617 -15.06504 -14.76967 -14.59932 -14.27851 -14.01771 -14.00167 -13.72352 -13.37521 -13.25239 -12.99110 -12.88311 -12.81823 -12.71010 -12.62759 -12.16331 -12.09857 -11.86954 -11.78749 -11.63663 -11.40395 -11.33145 -11.22801 -10.67801 -10.63750 -10.33820 -9.34647 -9.18782 -8.49967 -8.35894 -6.23865 0.38807 0.53919 1.26514 1.37908 1.45073 1.57733 1.62771 2.03520 2.17455 2.84924 2.97019 2.98585 3.16388 3.69099 3.93894 4.08471 4.09417 4.22217 4.27865 4.29416 4.34437 4.42480 4.49722 4.52107 4.60936 4.67978 4.71197 4.75156 4.76906 4.96265 5.01588 5.03869 5.09213 5.15199 5.31365 5.34866 5.42169 5.43884 5.49313 5.51722 5.66111 5.72094 5.89378 6.08352 6.12223 6.21660 6.48945 6.95567 7.16865 8.58673 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.002712 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.672632 B =10323.812309 C =11666.507110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.112 4.112 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.019 3.981 7 C 0.041 3.959 8 C 0.512 3.488 9 O -0.540 6.540 10 N -0.660 5.660 11 C 0.125 3.875 12 C -0.112 4.112 13 C -0.132 4.132 14 C -0.113 4.113 15 C -0.146 4.146 16 C -0.125 4.125 17 S -0.011 6.011 18 C -0.564 4.564 19 H 0.096 0.904 20 C 0.026 3.974 21 N -0.901 5.901 22 Si 0.991 3.009 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.263 1.263 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.025 0.975 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.415 0.585 41 H 0.135 0.865 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.125 0.875 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.363 -5.884 4.763 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.150 4.150 4 C -0.072 4.072 5 N -0.262 5.262 6 C -0.128 4.128 7 C -0.090 4.090 8 C 0.300 3.700 9 O -0.416 6.416 10 N -0.306 5.306 11 C 0.023 3.977 12 C -0.134 4.134 13 C -0.155 4.155 14 C -0.134 4.134 15 C -0.171 4.171 16 C -0.242 4.242 17 S 0.241 5.759 18 C -0.711 4.711 19 H 0.114 0.886 20 C -0.180 4.180 21 N -0.537 5.537 22 Si 0.813 3.187 23 H -0.190 1.190 24 H -0.199 1.199 25 H -0.187 1.187 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.252 0.748 41 H 0.153 0.847 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.142 0.858 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.049 -6.573 4.774 18.885 hybrid contribution 1.912 1.113 -1.034 2.442 sum -15.137 -5.460 3.740 16.521 Atomic orbital electron populations 1.21763 0.95467 1.01964 1.01776 1.21468 0.96221 0.95720 1.02409 1.21582 0.93738 0.97403 1.02257 1.22274 0.96316 0.86871 1.01774 1.61655 1.11225 1.17205 1.36084 1.22518 1.01984 0.99528 0.88818 1.22009 0.90235 0.91951 1.04757 1.21225 0.80928 0.92604 0.75218 1.90618 1.51495 1.49331 1.50167 1.43446 1.10298 1.06441 1.70417 1.17350 0.92976 0.85561 1.01835 1.21184 0.99612 0.93580 0.98991 1.21227 0.96662 0.95648 1.01943 1.21284 0.93967 0.99750 0.98371 1.21378 1.01111 0.92412 1.02204 1.22496 0.98282 0.99634 1.03795 1.82912 1.16287 1.11163 1.65572 1.23621 1.09207 0.98216 1.40075 0.88624 1.26013 1.00384 0.97279 0.94341 1.70099 1.32939 1.14069 1.36556 0.85047 0.77405 0.78285 0.77988 1.19049 1.19938 1.18670 0.92808 0.92948 0.92066 0.91807 0.91391 0.91946 0.92297 0.94121 0.89437 0.95644 0.90068 0.92174 0.90364 0.84938 0.74794 0.84747 0.83280 0.83734 0.85788 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.47 5.93 30.59 0.18 -1.29 16 3 C -0.11 -1.73 5.14 30.59 0.16 -1.58 16 4 C 0.05 0.92 4.96 86.31 0.43 1.35 16 5 N -0.54 -12.35 4.50 -927.06 -4.17 -16.52 16 6 C 0.02 0.48 9.01 127.69 1.15 1.63 16 7 C 0.04 0.94 5.45 85.56 0.47 1.41 16 8 C 0.51 16.07 7.40 87.66 0.65 16.72 16 9 O -0.54 -19.94 11.73 -3.08 -0.04 -19.98 16 10 N -0.66 -22.34 5.02 -302.98 -1.52 -23.87 16 11 C 0.12 4.91 6.32 38.31 0.24 5.15 16 12 C -0.11 -4.05 8.69 22.37 0.19 -3.86 16 13 C -0.13 -4.24 10.04 22.30 0.22 -4.02 16 14 C -0.11 -3.84 10.03 22.27 0.22 -3.62 16 15 C -0.15 -6.08 9.26 22.42 0.21 -5.88 16 16 C -0.13 -5.56 6.12 22.81 0.14 -5.42 16 17 S -0.01 -0.53 20.53 -56.49 -1.16 -1.69 16 18 C -0.56 -30.54 9.07 67.93 0.62 -29.92 16 19 H 0.10 4.99 4.83 -2.91 -0.01 4.97 16 20 C 0.03 1.39 5.49 84.83 0.47 1.85 16 21 N -0.90 -50.55 13.22 21.63 0.29 -50.26 16 22 Si 0.99 41.63 29.55 68.60 2.03 43.66 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 0.96 6.47 -2.39 -0.02 0.95 16 33 H 0.04 0.65 8.12 -2.39 -0.02 0.63 16 34 H 0.09 1.26 7.93 -2.39 -0.02 1.24 16 35 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 1.73 6.30 -2.39 -0.02 1.71 16 37 H 0.06 1.84 5.88 -2.39 -0.01 1.83 16 38 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 39 H 0.13 2.28 7.93 -2.39 -0.02 2.26 16 40 H 0.41 12.94 7.96 -92.71 -0.74 12.21 16 41 H 0.13 4.81 6.20 -2.91 -0.02 4.79 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.14 3.89 8.06 -2.92 -0.02 3.86 16 44 H 0.12 5.45 4.95 -2.91 -0.01 5.44 16 45 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -65.64 374.82 1.74 -63.90 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.26 Total: 33.27 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 6.06 Total: -28.51 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -5.41 Total: -90.65 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.04 Total: -19.98 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: -0.53 SS G_CDS: -1.16 Total: -1.69 kcal Total: -65.64 1.74 -63.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023991765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.601 kcal (2) G-P(sol) polarization free energy of solvation -65.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds