Wall clock time and date at job start Tue Mar 31 2020 14:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47052 * 2 1 4 4 C 1.52995 * 109.47329 * 120.00275 * 2 1 3 5 5 N 1.46901 * 109.47435 * 65.00022 * 4 2 1 6 6 C 1.46906 * 110.99722 * 66.04397 * 5 4 2 7 7 C 1.46893 * 111.00071 * 190.00151 * 5 4 2 8 8 C 1.50707 * 109.47226 * 169.99880 * 7 5 4 9 9 O 1.21294 * 119.99830 * 0.02562 * 8 7 5 10 10 N 1.34772 * 120.00097 * 179.97438 * 8 7 5 11 11 C 1.39941 * 119.99707 * 174.26732 * 10 8 7 12 12 C 1.38681 * 120.11474 * 335.21971 * 11 10 8 13 13 C 1.38221 * 120.01933 * 179.97438 * 12 11 10 14 14 C 1.38389 * 120.25039 * 0.02842 * 13 12 11 15 15 C 1.38084 * 120.22999 * 359.97092 * 14 13 12 16 16 C 1.38989 * 119.97734 * 0.02562 * 15 14 13 17 17 S 1.76199 * 120.12698 * 180.02562 * 16 15 14 18 18 C 1.76200 * 99.99868 * 354.39541 * 17 16 15 19 19 H 1.08001 * 119.99794 * 5.02738 * 18 17 16 20 20 C 1.38685 * 120.00013 * 185.03249 * 18 17 16 21 21 N 1.31656 * 120.00385 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00061 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46836 * 59.99818 * 22 20 18 24 24 H 1.48498 * 109.47359 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47076 * 299.99861 * 22 20 18 26 26 H 1.08997 * 109.47488 * 59.99644 * 1 2 3 27 27 H 1.09005 * 109.46736 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46913 * 299.99646 * 1 2 3 29 29 H 1.09004 * 109.46913 * 240.00354 * 2 1 3 30 30 H 1.09000 * 109.47340 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47777 * 300.00408 * 3 2 1 32 32 H 1.09004 * 109.46973 * 60.00390 * 3 2 1 33 33 H 1.08998 * 109.47240 * 305.00083 * 4 2 1 34 34 H 1.09003 * 109.47006 * 184.99817 * 4 2 1 35 35 H 1.09007 * 109.46696 * 183.95585 * 6 5 4 36 36 H 1.08993 * 109.47226 * 303.95687 * 6 5 4 37 37 H 1.08999 * 109.47096 * 63.96123 * 6 5 4 38 38 H 1.09001 * 109.47622 * 49.99823 * 7 5 4 39 39 H 1.09004 * 109.47082 * 289.99168 * 7 5 4 40 40 H 0.96997 * 120.00226 * 354.26119 * 10 8 7 41 41 H 1.08000 * 119.98816 * 0.26619 * 12 11 10 42 42 H 1.07995 * 119.87063 * 180.02562 * 13 12 11 43 43 H 1.07997 * 119.88652 * 179.97438 * 14 13 12 44 44 H 1.08002 * 120.01396 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00332 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6515 -2.1367 1.1903 6 6 2.3342 -2.8246 0.0863 7 6 1.9126 -2.8080 2.4706 8 6 1.2831 -4.1772 2.4575 9 8 0.6771 -4.5567 1.4777 10 7 1.3945 -4.9804 3.5339 11 6 0.7111 -6.2011 3.5698 12 6 -0.4354 -6.3792 2.8101 13 6 -1.1086 -7.5858 2.8467 14 6 -0.6436 -8.6199 3.6401 15 6 0.4969 -8.4538 4.4007 16 6 1.1814 -7.2445 4.3711 17 16 2.6374 -7.0285 5.3395 18 6 2.6409 -8.5489 6.2300 19 1 1.9051 -9.3072 6.0066 20 6 3.5885 -8.7717 7.2179 21 7 4.4857 -7.8474 7.4900 22 14 3.5918 -10.3833 8.1625 23 1 3.7877 -11.5111 7.2164 24 1 4.6961 -10.3731 9.1552 25 1 2.2945 -10.5472 8.8663 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6054 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2950 35 1 1.9761 -3.8521 0.0216 36 1 2.1241 -2.3070 -0.8496 37 1 3.4090 -2.8252 0.2678 38 1 1.4859 -2.2197 3.2830 39 1 2.9884 -2.9041 2.6177 40 1 1.9485 -4.7125 4.2838 41 1 -0.7996 -5.5764 2.1862 42 1 -2.0009 -7.7221 2.2538 43 1 -1.1744 -9.5601 3.6646 44 1 0.8570 -9.2633 5.0184 45 1 5.1482 -8.0031 8.1812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049442362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:26 Heat of formation + Delta-G solvation = -8.011343 kcal Electronic energy + Delta-G solvation = -24430.420301 eV Core-core repulsion = 20960.024091 eV Total energy + Delta-G solvation = -3470.396209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.23277 -38.41475 -37.36353 -34.55252 -34.22027 -32.76812 -30.32086 -29.74478 -27.69856 -27.24520 -27.12478 -25.89366 -23.36387 -22.34922 -21.61960 -20.03074 -19.81906 -18.37486 -17.03502 -16.78363 -16.09810 -15.82216 -15.69345 -15.17165 -14.91017 -14.77183 -14.19241 -14.10357 -13.82315 -13.55961 -13.07352 -13.02708 -12.92389 -12.66959 -12.50107 -12.34986 -11.97439 -11.85052 -11.67896 -11.57066 -11.32059 -11.21871 -11.10756 -11.09964 -11.04805 -10.65643 -10.39376 -10.09863 -9.82657 -9.57246 -9.27482 -8.78834 -8.66922 -8.40295 -7.63195 -6.54441 -6.52765 -4.25317 1.87222 2.09973 2.91713 2.99799 3.10712 3.14245 3.17687 3.35649 3.93514 3.97716 4.47426 4.57480 4.74533 4.78354 4.88998 4.95752 5.08269 5.14747 5.20321 5.29252 5.33414 5.40665 5.51937 5.55731 5.59747 5.66285 5.68719 5.73125 5.80745 5.90589 5.93624 6.03442 6.16173 6.22667 6.25069 6.30411 6.58698 6.76083 6.88996 6.92495 6.94490 7.13694 7.23388 7.44355 7.70271 7.81274 8.11731 8.43510 8.94371 10.53041 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.002818 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.324054 B = 9934.674202 C =11170.248044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.014 3.986 7 C 0.036 3.964 8 C 0.512 3.488 9 O -0.510 6.510 10 N -0.658 5.658 11 C 0.129 3.871 12 C -0.112 4.112 13 C -0.145 4.145 14 C -0.119 4.119 15 C -0.128 4.128 16 C -0.108 4.108 17 S 0.029 5.971 18 C -0.545 4.545 19 H 0.095 0.905 20 C 0.077 3.923 21 N -0.867 5.867 22 Si 0.924 3.076 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.270 1.270 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.020 0.980 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.411 0.589 41 H 0.138 0.862 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 13.171 -10.257 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.069 4.069 5 N -0.244 5.244 6 C -0.133 4.133 7 C -0.096 4.096 8 C 0.299 3.701 9 O -0.385 6.385 10 N -0.303 5.303 11 C 0.027 3.973 12 C -0.134 4.134 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.154 4.154 16 C -0.225 4.225 17 S 0.282 5.718 18 C -0.692 4.692 19 H 0.112 0.888 20 C -0.133 4.133 21 N -0.500 5.500 22 Si 0.749 3.251 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.195 1.195 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.248 0.752 41 H 0.155 0.845 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.310 13.931 -10.702 18.089 hybrid contribution 0.413 -1.852 1.186 2.238 sum -3.896 12.079 -9.516 15.863 Atomic orbital electron populations 1.21732 0.94387 1.02897 1.00654 1.21136 0.96988 0.95282 0.97840 1.21826 1.00739 0.96029 1.01884 1.22251 0.97865 0.87823 0.99006 1.61628 1.58692 1.01589 1.02530 1.22637 0.95256 1.01569 0.93871 1.21976 1.00008 0.93386 0.94187 1.20500 0.80891 0.86358 0.82384 1.90610 1.41041 1.74385 1.32513 1.43438 1.48323 1.18332 1.20233 1.17193 0.93724 0.84922 1.01499 1.21102 0.93553 0.98685 1.00051 1.20765 1.00687 0.93836 1.01603 1.20960 0.96937 0.98485 0.97613 1.21277 0.96031 0.97131 1.00958 1.22444 1.02463 0.94983 1.02603 1.83045 1.20188 1.27182 1.41359 1.23219 1.20431 1.02229 1.23283 0.88793 1.25085 0.94176 0.98246 0.95755 1.69984 1.15846 1.33434 1.30756 0.86110 0.78285 0.81481 0.79180 1.19490 1.20594 1.19473 0.93597 0.91126 0.93185 0.91048 0.92913 0.92544 0.92630 0.90662 0.94771 0.89170 0.91278 0.96127 0.87618 0.91542 0.75234 0.84473 0.87025 0.87148 0.84462 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.08 37.16 0.34 -0.91 16 2 C -0.09 -0.78 2.84 -90.62 -0.26 -1.04 16 3 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 4 C 0.06 0.53 4.35 -3.83 -0.02 0.52 16 5 N -0.52 -5.98 3.95 -244.37 -0.97 -6.95 16 6 C 0.01 0.17 9.02 60.07 0.54 0.71 16 7 C 0.04 0.41 5.45 -4.98 -0.03 0.39 16 8 C 0.51 7.94 7.36 -10.98 -0.08 7.86 16 9 O -0.51 -9.19 11.48 5.55 0.06 -9.13 16 10 N -0.66 -11.12 5.17 -9.70 -0.05 -11.17 16 11 C 0.13 2.54 6.44 -83.44 -0.54 2.01 16 12 C -0.11 -2.11 8.72 -39.42 -0.34 -2.45 16 13 C -0.15 -2.54 10.04 -39.53 -0.40 -2.94 16 14 C -0.12 -2.16 10.03 -39.58 -0.40 -2.56 16 15 C -0.13 -2.69 9.26 -39.36 -0.36 -3.05 16 16 C -0.11 -2.35 6.12 -38.75 -0.24 -2.59 16 17 S 0.03 0.69 20.37 -107.50 -2.19 -1.50 16 18 C -0.54 -14.34 9.08 30.90 0.28 -14.06 16 19 H 0.09 2.38 4.81 -52.49 -0.25 2.13 16 20 C 0.08 2.03 5.49 -17.46 -0.10 1.94 16 21 N -0.87 -23.70 13.22 55.48 0.73 -22.97 16 22 Si 0.92 20.10 29.55 -169.99 -5.02 15.08 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.63 6.26 -51.93 -0.33 0.30 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.64 7.93 -51.93 -0.41 0.23 16 34 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 35 H 0.09 1.29 5.88 -51.92 -0.31 0.99 16 36 H 0.07 0.72 6.21 -51.93 -0.32 0.40 16 37 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.11 1.02 7.93 -51.93 -0.41 0.61 16 39 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.41 6.48 7.65 -40.82 -0.31 6.17 16 41 H 0.14 2.55 5.78 -52.49 -0.30 2.25 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.14 2.97 4.93 -52.49 -0.26 2.71 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -29.47 372.20 -9.74 -39.21 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.67 Total: 8.67 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.25 Total: -16.85 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: -0.28 Total: -41.08 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.06 Total: -9.13 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.19 Total: -1.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.47 -9.74 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049442362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.199 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds