Wall clock time and date at job start Tue Mar 31 2020 14:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47052 * 2 1 4 4 C 1.52995 * 109.47329 * 120.00275 * 2 1 3 5 5 N 1.46901 * 109.47435 * 65.00022 * 4 2 1 6 6 C 1.46906 * 110.99722 * 66.04397 * 5 4 2 7 7 C 1.46893 * 111.00071 * 190.00151 * 5 4 2 8 8 C 1.50707 * 109.47226 * 169.99880 * 7 5 4 9 9 O 1.21294 * 119.99830 * 0.02562 * 8 7 5 10 10 N 1.34772 * 120.00097 * 179.97438 * 8 7 5 11 11 C 1.39941 * 119.99707 * 174.26732 * 10 8 7 12 12 C 1.38681 * 120.11474 * 335.21971 * 11 10 8 13 13 C 1.38221 * 120.01933 * 179.97438 * 12 11 10 14 14 C 1.38389 * 120.25039 * 0.02842 * 13 12 11 15 15 C 1.38084 * 120.22999 * 359.97092 * 14 13 12 16 16 C 1.38989 * 119.97734 * 0.02562 * 15 14 13 17 17 S 1.76199 * 120.12698 * 180.02562 * 16 15 14 18 18 C 1.76200 * 99.99868 * 354.39541 * 17 16 15 19 19 H 1.08001 * 119.99794 * 5.02738 * 18 17 16 20 20 C 1.38685 * 120.00013 * 185.03249 * 18 17 16 21 21 N 1.31656 * 120.00385 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00061 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46836 * 59.99818 * 22 20 18 24 24 H 1.48498 * 109.47359 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47076 * 299.99861 * 22 20 18 26 26 H 1.08997 * 109.47488 * 59.99644 * 1 2 3 27 27 H 1.09005 * 109.46736 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46913 * 299.99646 * 1 2 3 29 29 H 1.09004 * 109.46913 * 240.00354 * 2 1 3 30 30 H 1.09000 * 109.47340 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47777 * 300.00408 * 3 2 1 32 32 H 1.09004 * 109.46973 * 60.00390 * 3 2 1 33 33 H 1.08998 * 109.47240 * 305.00083 * 4 2 1 34 34 H 1.09003 * 109.47006 * 184.99817 * 4 2 1 35 35 H 1.09007 * 109.46696 * 183.95585 * 6 5 4 36 36 H 1.08993 * 109.47226 * 303.95687 * 6 5 4 37 37 H 1.08999 * 109.47096 * 63.96123 * 6 5 4 38 38 H 1.09001 * 109.47622 * 49.99823 * 7 5 4 39 39 H 1.09004 * 109.47082 * 289.99168 * 7 5 4 40 40 H 0.96997 * 120.00226 * 354.26119 * 10 8 7 41 41 H 1.08000 * 119.98816 * 0.26619 * 12 11 10 42 42 H 1.07995 * 119.87063 * 180.02562 * 13 12 11 43 43 H 1.07997 * 119.88652 * 179.97438 * 14 13 12 44 44 H 1.08002 * 120.01396 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00332 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6515 -2.1367 1.1903 6 6 2.3342 -2.8246 0.0863 7 6 1.9126 -2.8080 2.4706 8 6 1.2831 -4.1772 2.4575 9 8 0.6771 -4.5567 1.4777 10 7 1.3945 -4.9804 3.5339 11 6 0.7111 -6.2011 3.5698 12 6 -0.4354 -6.3792 2.8101 13 6 -1.1086 -7.5858 2.8467 14 6 -0.6436 -8.6199 3.6401 15 6 0.4969 -8.4538 4.4007 16 6 1.1814 -7.2445 4.3711 17 16 2.6374 -7.0285 5.3395 18 6 2.6409 -8.5489 6.2300 19 1 1.9051 -9.3072 6.0066 20 6 3.5885 -8.7717 7.2179 21 7 4.4857 -7.8474 7.4900 22 14 3.5918 -10.3833 8.1625 23 1 3.7877 -11.5111 7.2164 24 1 4.6961 -10.3731 9.1552 25 1 2.2945 -10.5472 8.8663 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6054 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2950 35 1 1.9761 -3.8521 0.0216 36 1 2.1241 -2.3070 -0.8496 37 1 3.4090 -2.8252 0.2678 38 1 1.4859 -2.2197 3.2830 39 1 2.9884 -2.9041 2.6177 40 1 1.9485 -4.7125 4.2838 41 1 -0.7996 -5.5764 2.1862 42 1 -2.0009 -7.7221 2.2538 43 1 -1.1744 -9.5601 3.6646 44 1 0.8570 -9.2633 5.0184 45 1 5.1482 -8.0031 8.1812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049442362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:25 Heat of formation + Delta-G solvation = -24.646733 kcal Electronic energy + Delta-G solvation = -24431.141665 eV Core-core repulsion = 20960.024091 eV Total energy + Delta-G solvation = -3471.117574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.54096 -39.59281 -38.49935 -35.78048 -35.18197 -34.72200 -31.88359 -31.05379 -28.82565 -27.95589 -27.87388 -27.84977 -24.45780 -23.82348 -22.93166 -21.20194 -20.66195 -20.12580 -18.39135 -18.16474 -17.57314 -17.03896 -16.89945 -16.54995 -16.01009 -15.92635 -15.60654 -15.19586 -15.04463 -14.76459 -14.59545 -14.34738 -14.05678 -13.89998 -13.48290 -13.36472 -13.02627 -12.97207 -12.90224 -12.83104 -12.71597 -12.67631 -12.50512 -12.10997 -11.77794 -11.77366 -11.63526 -11.38859 -11.36400 -11.33287 -10.66044 -10.58379 -10.36026 -9.30461 -9.13063 -8.49210 -8.33738 -6.23464 0.38946 0.53958 1.26674 1.40225 1.44654 1.57905 1.64297 2.00705 2.18195 2.86410 2.97984 3.01357 3.15546 3.66880 3.88021 4.08944 4.09518 4.21501 4.27631 4.32547 4.35775 4.49540 4.52450 4.55510 4.67372 4.70180 4.70982 4.80464 4.85016 4.89863 5.03648 5.10731 5.15808 5.17195 5.31846 5.33090 5.44399 5.48805 5.50471 5.56914 5.65795 5.73112 5.92306 6.10088 6.12758 6.22599 6.48951 6.96137 7.14335 8.59326 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.002818 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.324054 B = 9934.674202 C =11170.248044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C -0.142 4.142 4 C 0.059 3.941 5 N -0.532 5.532 6 C 0.020 3.980 7 C 0.042 3.958 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.661 5.661 11 C 0.130 3.870 12 C -0.123 4.123 13 C -0.129 4.129 14 C -0.118 4.118 15 C -0.143 4.143 16 C -0.130 4.130 17 S -0.014 6.014 18 C -0.564 4.564 19 H 0.096 0.904 20 C 0.027 3.973 21 N -0.902 5.902 22 Si 0.991 3.009 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.263 1.263 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.026 0.974 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.415 0.585 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 13.668 -10.860 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.068 4.068 5 N -0.257 5.257 6 C -0.128 4.128 7 C -0.089 4.089 8 C 0.300 3.700 9 O -0.412 6.412 10 N -0.306 5.306 11 C 0.028 3.972 12 C -0.145 4.145 13 C -0.151 4.151 14 C -0.139 4.139 15 C -0.168 4.168 16 C -0.247 4.247 17 S 0.237 5.763 18 C -0.711 4.711 19 H 0.114 0.886 20 C -0.179 4.179 21 N -0.537 5.537 22 Si 0.812 3.188 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.188 1.188 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.148 0.852 39 H 0.098 0.902 40 H 0.252 0.748 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.143 0.857 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.419 14.454 -11.343 19.155 hybrid contribution 0.596 -1.940 1.203 2.359 sum -4.823 12.514 -10.140 16.813 Atomic orbital electron populations 1.21680 0.94886 1.01481 1.01220 1.21130 0.96487 0.96217 0.97262 1.21782 1.01016 0.94817 1.02410 1.22323 0.98441 0.86221 0.99812 1.61617 1.59160 1.02736 1.02163 1.22523 0.95456 1.00108 0.94741 1.22006 1.00522 0.91183 0.95221 1.21234 0.80168 0.87292 0.81312 1.90593 1.42207 1.75137 1.33251 1.43558 1.48287 1.17757 1.20952 1.17407 0.93909 0.85435 1.00485 1.21307 0.93453 0.99641 1.00086 1.21230 1.00969 0.92646 1.00296 1.21270 0.95898 1.00123 0.96580 1.21372 0.97255 0.96559 1.01626 1.22404 1.02191 0.96364 1.03730 1.82892 1.23092 1.27339 1.42960 1.23577 1.20706 1.03052 1.23766 0.88599 1.26007 0.93691 1.01642 0.96589 1.70090 1.16667 1.35349 1.31570 0.85099 0.78562 0.77241 0.77853 1.18921 1.19908 1.18765 0.92838 0.93431 0.92847 0.91565 0.92438 0.92008 0.92149 0.89718 0.94000 0.92077 0.90195 0.95508 0.85246 0.90156 0.74795 0.84148 0.83336 0.83794 0.85741 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.08 71.98 0.65 -1.59 16 2 C -0.09 -1.38 2.84 -10.80 -0.03 -1.41 16 3 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 4 C 0.06 0.96 4.35 86.30 0.38 1.33 16 5 N -0.53 -11.58 3.95 -927.04 -3.67 -15.24 16 6 C 0.02 0.45 9.02 127.69 1.15 1.60 16 7 C 0.04 0.91 5.45 85.56 0.47 1.38 16 8 C 0.51 15.68 7.36 87.66 0.65 16.32 16 9 O -0.54 -19.22 11.48 -3.07 -0.04 -19.25 16 10 N -0.66 -22.42 5.17 -302.99 -1.57 -23.99 16 11 C 0.13 5.14 6.44 38.31 0.25 5.38 16 12 C -0.12 -4.48 8.72 22.37 0.20 -4.28 16 13 C -0.13 -4.17 10.04 22.30 0.22 -3.94 16 14 C -0.12 -4.03 10.03 22.27 0.22 -3.81 16 15 C -0.14 -5.98 9.26 22.41 0.21 -5.78 16 16 C -0.13 -5.79 6.12 22.81 0.14 -5.65 16 17 S -0.01 -0.68 20.37 -56.49 -1.15 -1.84 16 18 C -0.56 -30.47 9.08 67.93 0.62 -29.85 16 19 H 0.10 4.98 4.81 -2.91 -0.01 4.96 16 20 C 0.03 1.43 5.49 84.83 0.47 1.90 16 21 N -0.90 -50.44 13.22 21.63 0.29 -50.15 16 22 Si 0.99 41.47 29.55 68.60 2.03 43.50 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 1.01 7.75 -2.38 -0.02 0.99 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 1.06 6.26 -2.39 -0.01 1.05 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 1.23 7.93 -2.39 -0.02 1.21 16 34 H 0.04 0.63 8.12 -2.39 -0.02 0.61 16 35 H 0.06 1.77 5.88 -2.38 -0.01 1.75 16 36 H 0.08 1.61 6.21 -2.39 -0.01 1.59 16 37 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.13 2.24 7.93 -2.39 -0.02 2.22 16 39 H 0.08 1.58 8.12 -2.38 -0.02 1.56 16 40 H 0.41 13.34 7.65 -92.71 -0.71 12.63 16 41 H 0.14 5.07 5.78 -2.91 -0.02 5.05 16 42 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 43 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 44 H 0.13 5.48 4.93 -2.91 -0.01 5.46 16 45 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -64.78 372.20 2.43 -62.35 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.29 Total: 33.99 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 6.24 Total: -29.36 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -4.95 Total: -89.38 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.04 Total: -19.25 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -1.15 Total: -1.84 kcal Total: -64.78 2.43 -62.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049442362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.704 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds