Wall clock time and date at job start Tue Mar 31 2020 14:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47063 * 2 1 4 4 C 1.52993 * 109.46854 * 240.00156 * 2 1 3 5 5 N 1.46494 * 109.46963 * 120.00016 * 2 1 3 6 6 C 1.34774 * 120.00354 * 58.92158 * 5 2 1 7 7 S 1.71200 * 119.99826 * 4.64988 * 6 5 2 8 8 N 1.34781 * 120.00073 * 184.65411 * 6 5 2 9 9 C 1.39891 * 119.99808 * 185.50585 * 8 6 5 10 10 C 1.38940 * 120.03787 * 221.55490 * 9 8 6 11 11 C 1.38126 * 120.03623 * 180.02562 * 10 9 8 12 12 C 1.38218 * 120.12146 * 359.68497 * 11 10 9 13 13 C 1.38768 * 120.08891 * 0.58873 * 12 11 10 14 14 O 1.35892 * 120.01937 * 179.69997 * 13 12 11 15 15 C 1.42904 * 117.00181 * 359.73215 * 14 13 12 16 16 C 1.53000 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47045 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99631 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00353 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99803 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00213 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47323 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47188 * 119.99616 * 21 19 17 24 24 H 1.48494 * 109.47314 * 239.99778 * 21 19 17 25 25 C 1.38626 * 119.95871 * 359.43342 * 13 12 11 26 26 H 1.09002 * 109.46860 * 292.54725 * 1 2 3 27 27 H 1.08999 * 109.47419 * 52.54997 * 1 2 3 28 28 H 1.09003 * 109.47025 * 172.55459 * 1 2 3 29 29 H 1.08994 * 109.47162 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47038 * 300.00308 * 3 2 1 31 31 H 1.08997 * 109.47253 * 60.00106 * 3 2 1 32 32 H 1.09005 * 109.47354 * 309.29677 * 4 2 1 33 33 H 1.09004 * 109.47432 * 69.30390 * 4 2 1 34 34 H 1.08999 * 109.47015 * 189.30148 * 4 2 1 35 35 H 0.97008 * 119.99581 * 238.91436 * 5 2 1 36 36 H 0.96996 * 119.99973 * 5.50229 * 8 6 5 37 37 H 1.07997 * 119.98782 * 0.02562 * 10 9 8 38 38 H 1.07992 * 119.93699 * 179.97438 * 11 10 9 39 39 H 1.07999 * 119.95356 * 180.29989 * 12 11 10 40 40 H 1.08998 * 109.47092 * 299.99750 * 15 14 13 41 41 H 1.08999 * 109.47069 * 59.99602 * 15 14 13 42 42 H 1.08998 * 109.46956 * 299.99766 * 16 15 14 43 43 H 1.08999 * 109.47606 * 59.99863 * 16 15 14 44 44 H 0.97000 * 120.00154 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.06394 * 180.24894 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1961 6 6 1.6749 -1.9744 1.4205 7 16 0.7677 -2.8347 0.2510 8 7 2.0457 -2.5809 2.5656 9 6 1.7903 -3.9440 2.7496 10 6 1.3359 -4.4068 3.9783 11 6 1.0843 -5.7527 4.1600 12 6 1.2774 -6.6412 3.1190 13 6 1.7365 -6.1854 1.8914 14 8 1.9316 -7.0611 0.8707 15 6 1.6496 -8.4371 1.1336 16 6 1.9272 -9.2637 -0.1237 17 6 1.6292 -10.7148 0.1533 18 1 1.2775 -11.0171 1.1286 19 6 1.8066 -11.6565 -0.8381 20 7 2.2354 -11.2883 -2.0255 21 14 1.4379 -13.4551 -0.4945 22 1 0.9732 -13.6062 0.9078 23 1 0.3787 -13.9291 -1.4211 24 1 2.6691 -14.2603 -0.6969 25 6 1.9906 -4.8354 1.7052 26 1 -0.3633 0.3941 0.9491 27 1 -0.3634 0.6249 -0.8158 28 1 -0.3633 -1.0190 -0.1332 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5474 -1.6897 -1.3362 33 1 1.8186 -0.1204 -2.1314 34 1 3.1172 -0.8673 -1.1701 35 1 2.5889 -0.2238 1.8267 36 1 2.4896 -2.0723 3.2621 37 1 1.1794 -3.7139 4.7918 38 1 0.7316 -6.1108 5.1159 39 1 1.0752 -7.6924 3.2627 40 1 2.2843 -8.7891 1.9468 41 1 0.6027 -8.5458 1.4166 42 1 1.2929 -8.9118 -0.9372 43 1 2.9743 -9.1550 -0.4063 44 1 2.3598 -11.9507 -2.7231 45 1 2.3440 -4.4782 0.7493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054955339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:08 Heat of formation + Delta-G solvation = 7.706457 kcal Electronic energy + Delta-G solvation = -24271.757642 eV Core-core repulsion = 20802.043007 eV Total energy + Delta-G solvation = -3469.714635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43405 -39.44831 -37.95092 -35.94619 -33.31750 -32.60725 -30.84000 -29.43631 -28.90841 -27.97921 -27.38676 -25.02879 -24.62116 -22.44923 -22.21366 -20.95732 -20.30188 -18.78975 -18.37199 -16.83638 -16.22928 -15.93611 -15.65836 -15.41945 -15.22755 -15.14115 -14.87607 -14.44773 -14.10436 -14.05162 -13.49223 -13.00527 -12.83911 -12.67297 -12.36251 -12.27923 -12.24535 -11.91814 -11.75609 -11.62062 -11.43956 -11.34029 -11.21160 -11.03594 -10.85980 -10.72122 -10.46025 -10.01601 -9.76303 -9.58676 -9.21700 -8.57939 -8.38988 -7.86298 -7.59783 -6.73942 -6.04272 -4.08593 0.84546 1.62009 1.68956 1.83284 2.31130 3.13392 3.30692 3.37612 3.41281 3.95252 3.96931 4.36011 4.46581 4.54979 4.70752 5.00157 5.11154 5.15120 5.24092 5.27973 5.32081 5.37751 5.47167 5.51718 5.56133 5.59084 5.71773 5.79384 5.84626 6.02210 6.10684 6.13235 6.24632 6.36753 6.44673 6.51297 6.53803 6.60319 6.65907 6.80917 6.97868 7.11455 7.59022 7.73157 7.88296 8.15638 8.30919 8.97423 9.55313 11.07394 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.002531 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.829379 B =11059.286054 C =12182.868880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.179 3.821 3 C -0.156 4.156 4 C -0.188 4.188 5 N -0.677 5.677 6 C 0.551 3.449 7 S -0.584 6.584 8 N -0.630 5.630 9 C 0.156 3.844 10 C -0.175 4.175 11 C -0.074 4.074 12 C -0.207 4.207 13 C 0.156 3.844 14 O -0.309 6.309 15 C 0.065 3.935 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.114 4.114 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.394 0.606 36 H 0.404 0.596 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 26.936 11.531 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.094 3.906 3 C -0.214 4.214 4 C -0.248 4.248 5 N -0.307 5.307 6 C 0.195 3.805 7 S -0.452 6.452 8 N -0.255 5.255 9 C 0.063 3.937 10 C -0.196 4.196 11 C -0.093 4.093 12 C -0.226 4.226 13 C 0.107 3.893 14 O -0.222 6.222 15 C -0.009 4.009 16 C -0.013 4.013 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.527 5.527 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.230 0.770 36 H 0.242 0.758 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.357 26.347 10.237 28.268 hybrid contribution 0.729 0.015 1.615 1.772 sum 1.085 26.362 11.851 28.924 Atomic orbital electron populations 1.22659 0.92984 1.07344 1.01338 1.20608 0.95562 0.90942 0.83465 1.22133 1.01572 0.94273 1.03375 1.22797 1.01406 1.05776 0.94792 1.45314 1.49786 1.09468 1.26137 1.22459 0.84653 0.85164 0.88274 1.93422 1.47963 1.64819 1.38999 1.42189 1.57936 1.09461 1.15912 1.16904 1.01836 0.79859 0.95069 1.20567 1.06201 0.96434 0.96378 1.20590 0.98321 0.92035 0.98398 1.21454 1.06535 1.01217 0.93443 1.18838 0.93303 0.89773 0.87378 1.86203 1.81442 1.19358 1.35186 1.23331 0.99070 0.76172 1.02296 1.19128 0.98528 0.92698 0.90917 1.21014 1.45593 0.91365 0.98285 0.92330 1.24993 0.95029 0.99261 0.94975 1.69991 1.45596 1.34144 1.02990 0.86444 0.78001 0.84623 0.78392 1.19659 1.20854 1.20907 1.20430 1.03524 0.89627 1.00075 0.93418 0.91614 0.86812 0.91971 0.90025 0.92127 0.86059 0.91923 0.93194 0.76952 0.75804 0.86379 0.85666 0.84977 0.93189 0.93058 0.95263 0.95416 0.92800 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.25 37.16 0.31 -1.35 16 2 C 0.18 1.38 1.06 -131.82 -0.14 1.24 16 3 C -0.16 -0.75 8.57 37.16 0.32 -0.43 16 4 C -0.19 -1.82 8.21 37.15 0.31 -1.52 16 5 N -0.68 -4.95 5.11 -49.31 -0.25 -5.20 16 6 C 0.55 5.97 7.26 -86.92 -0.63 5.34 16 7 S -0.58 -9.20 19.36 -107.50 -2.08 -11.28 16 8 N -0.63 -5.94 5.33 -11.42 -0.06 -6.00 16 9 C 0.16 2.01 5.92 -83.73 -0.50 1.51 16 10 C -0.17 -2.01 9.97 -39.36 -0.39 -2.40 16 11 C -0.07 -0.93 10.03 -39.63 -0.40 -1.33 16 12 C -0.21 -3.23 9.04 -39.39 -0.36 -3.58 16 13 C 0.16 2.83 6.68 -39.24 -0.26 2.57 16 14 O -0.31 -6.69 10.13 -19.40 -0.20 -6.88 16 15 C 0.07 1.44 4.68 37.16 0.17 1.61 16 16 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 17 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 21 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 C -0.11 -1.88 7.79 -39.24 -0.31 -2.19 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 28 H 0.11 1.39 4.95 -34.38 -0.17 1.22 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.12 1.58 4.72 -29.96 -0.14 1.44 16 33 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.39 1.59 8.50 -40.82 -0.35 1.25 16 36 H 0.40 2.19 8.85 -40.82 -0.36 1.83 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.13 2.01 6.29 -52.49 -0.33 1.68 16 40 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 41 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.15 2.65 6.23 -49.06 -0.31 2.34 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -33.93 371.73 -10.35 -44.28 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.64 Total: 2.73 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.44 Total: -13.58 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.42 Total: -37.43 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.20 Total: -6.88 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -2.08 Total: -11.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.93 -10.35 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054955339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.984 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds