Wall clock time and date at job start Tue Mar 31 2020 14:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47063 * 2 1 4 4 C 1.52993 * 109.46854 * 240.00156 * 2 1 3 5 5 N 1.46494 * 109.46963 * 120.00016 * 2 1 3 6 6 C 1.34774 * 120.00354 * 58.92158 * 5 2 1 7 7 S 1.71200 * 119.99826 * 4.64988 * 6 5 2 8 8 N 1.34781 * 120.00073 * 184.65411 * 6 5 2 9 9 C 1.39891 * 119.99808 * 185.50585 * 8 6 5 10 10 C 1.38940 * 120.03787 * 221.55490 * 9 8 6 11 11 C 1.38126 * 120.03623 * 180.02562 * 10 9 8 12 12 C 1.38218 * 120.12146 * 359.68497 * 11 10 9 13 13 C 1.38768 * 120.08891 * 0.58873 * 12 11 10 14 14 O 1.35892 * 120.01937 * 179.69997 * 13 12 11 15 15 C 1.42904 * 117.00181 * 359.73215 * 14 13 12 16 16 C 1.53000 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47045 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99631 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00353 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99803 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00213 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47323 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47188 * 119.99616 * 21 19 17 24 24 H 1.48494 * 109.47314 * 239.99778 * 21 19 17 25 25 C 1.38626 * 119.95871 * 359.43342 * 13 12 11 26 26 H 1.09002 * 109.46860 * 292.54725 * 1 2 3 27 27 H 1.08999 * 109.47419 * 52.54997 * 1 2 3 28 28 H 1.09003 * 109.47025 * 172.55459 * 1 2 3 29 29 H 1.08994 * 109.47162 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47038 * 300.00308 * 3 2 1 31 31 H 1.08997 * 109.47253 * 60.00106 * 3 2 1 32 32 H 1.09005 * 109.47354 * 309.29677 * 4 2 1 33 33 H 1.09004 * 109.47432 * 69.30390 * 4 2 1 34 34 H 1.08999 * 109.47015 * 189.30148 * 4 2 1 35 35 H 0.97008 * 119.99581 * 238.91436 * 5 2 1 36 36 H 0.96996 * 119.99973 * 5.50229 * 8 6 5 37 37 H 1.07997 * 119.98782 * 0.02562 * 10 9 8 38 38 H 1.07992 * 119.93699 * 179.97438 * 11 10 9 39 39 H 1.07999 * 119.95356 * 180.29989 * 12 11 10 40 40 H 1.08998 * 109.47092 * 299.99750 * 15 14 13 41 41 H 1.08999 * 109.47069 * 59.99602 * 15 14 13 42 42 H 1.08998 * 109.46956 * 299.99766 * 16 15 14 43 43 H 1.08999 * 109.47606 * 59.99863 * 16 15 14 44 44 H 0.97000 * 120.00154 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.06394 * 180.24894 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1961 6 6 1.6749 -1.9744 1.4205 7 16 0.7677 -2.8347 0.2510 8 7 2.0457 -2.5809 2.5656 9 6 1.7903 -3.9440 2.7496 10 6 1.3359 -4.4068 3.9783 11 6 1.0843 -5.7527 4.1600 12 6 1.2774 -6.6412 3.1190 13 6 1.7365 -6.1854 1.8914 14 8 1.9316 -7.0611 0.8707 15 6 1.6496 -8.4371 1.1336 16 6 1.9272 -9.2637 -0.1237 17 6 1.6292 -10.7148 0.1533 18 1 1.2775 -11.0171 1.1286 19 6 1.8066 -11.6565 -0.8381 20 7 2.2354 -11.2883 -2.0255 21 14 1.4379 -13.4551 -0.4945 22 1 0.9732 -13.6062 0.9078 23 1 0.3787 -13.9291 -1.4211 24 1 2.6691 -14.2603 -0.6969 25 6 1.9906 -4.8354 1.7052 26 1 -0.3633 0.3941 0.9491 27 1 -0.3634 0.6249 -0.8158 28 1 -0.3633 -1.0190 -0.1332 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5474 -1.6897 -1.3362 33 1 1.8186 -0.1204 -2.1314 34 1 3.1172 -0.8673 -1.1701 35 1 2.5889 -0.2238 1.8267 36 1 2.4896 -2.0723 3.2621 37 1 1.1794 -3.7139 4.7918 38 1 0.7316 -6.1108 5.1159 39 1 1.0752 -7.6924 3.2627 40 1 2.2843 -8.7891 1.9468 41 1 0.6027 -8.5458 1.4166 42 1 1.2929 -8.9118 -0.9372 43 1 2.9743 -9.1550 -0.4063 44 1 2.3598 -11.9507 -2.7231 45 1 2.3440 -4.4782 0.7493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054955339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:07 Heat of formation + Delta-G solvation = -14.201990 kcal Electronic energy + Delta-G solvation = -24272.707663 eV Core-core repulsion = 20802.043007 eV Total energy + Delta-G solvation = -3470.664656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47137 -40.51860 -39.10698 -37.01456 -35.43797 -33.43981 -32.57913 -30.92097 -30.01504 -28.52714 -28.14995 -26.98998 -25.58328 -23.91522 -23.31172 -22.40401 -21.36258 -19.78507 -19.48640 -18.46616 -17.64020 -17.05683 -16.96495 -16.86502 -16.54246 -16.25058 -16.20178 -15.67138 -14.97720 -14.85453 -14.51717 -14.35281 -14.25463 -14.21712 -13.38975 -13.32284 -13.12935 -12.99798 -12.94145 -12.70333 -12.65337 -12.55658 -12.50994 -12.31354 -12.12590 -12.03772 -11.85817 -11.58642 -11.54686 -11.36466 -10.82338 -10.62116 -9.62910 -9.08902 -8.71248 -8.25298 -7.90271 -6.39368 -0.15759 0.56215 0.61469 0.85539 1.37231 1.41404 1.43127 1.56613 2.26491 2.42161 2.65378 2.83575 3.08922 3.79248 3.95157 3.96221 4.08028 4.17206 4.22482 4.24348 4.30614 4.40530 4.51420 4.57739 4.67099 4.74035 4.77090 4.77664 4.89867 4.99738 5.05732 5.16411 5.21382 5.24588 5.32873 5.41279 5.48130 5.49264 5.54917 5.62478 5.67102 5.72641 5.78995 6.04197 6.09741 6.37225 6.63360 6.76152 7.30761 8.88464 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.002531 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.829379 B =11059.286054 C =12182.868880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.178 3.822 3 C -0.147 4.147 4 C -0.188 4.188 5 N -0.649 5.649 6 C 0.576 3.424 7 S -0.690 6.690 8 N -0.610 5.610 9 C 0.160 3.840 10 C -0.152 4.152 11 C -0.068 4.068 12 C -0.215 4.215 13 C 0.112 3.888 14 O -0.344 6.344 15 C 0.086 3.914 16 C 0.027 3.973 17 C -0.543 4.543 18 H 0.073 0.927 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.979 3.021 22 H -0.255 1.255 23 H -0.278 1.278 24 H -0.276 1.276 25 C -0.130 4.130 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.418 0.582 36 H 0.431 0.569 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.058 0.942 42 H -0.008 1.008 43 H -0.003 1.003 44 H 0.266 0.734 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 28.973 15.604 32.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.094 3.906 3 C -0.205 4.205 4 C -0.247 4.247 5 N -0.278 5.278 6 C 0.214 3.786 7 S -0.559 6.559 8 N -0.238 5.238 9 C 0.067 3.933 10 C -0.172 4.172 11 C -0.086 4.086 12 C -0.235 4.235 13 C 0.066 3.934 14 O -0.258 6.258 15 C 0.012 3.988 16 C -0.010 4.010 17 C -0.581 4.581 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.802 3.198 22 H -0.179 1.179 23 H -0.203 1.203 24 H -0.201 1.201 25 C -0.152 4.152 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.259 0.741 36 H 0.273 0.727 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.149 0.851 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.011 0.989 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.453 28.469 14.364 31.891 hybrid contribution 0.749 -0.378 0.391 0.926 sum 1.202 28.091 14.756 31.753 Atomic orbital electron populations 1.22558 0.93819 1.05468 1.02194 1.20695 0.94947 0.92548 0.82418 1.22089 1.02255 0.91481 1.04676 1.22698 1.00811 1.04533 0.96667 1.45251 1.48394 1.07955 1.26224 1.21838 0.83684 0.85776 0.87298 1.93792 1.52478 1.67266 1.42347 1.41920 1.57453 1.08388 1.16023 1.16960 1.01028 0.80672 0.94684 1.21063 1.02883 0.96853 0.96442 1.21048 0.96831 0.91968 0.98789 1.21582 1.06641 1.01981 0.93252 1.19150 0.96602 0.89817 0.87876 1.86104 1.82888 1.19211 1.37604 1.22849 0.99654 0.76649 0.99661 1.18971 0.95742 0.93974 0.92309 1.21433 1.45607 0.91931 0.99080 0.90841 1.26106 0.94463 1.04926 0.94520 1.70149 1.46684 1.36179 1.04276 0.85191 0.77973 0.77591 0.79017 1.17858 1.20348 1.20143 1.20370 1.04723 0.89785 1.00314 0.92566 0.90542 0.90163 0.90838 0.89298 0.90327 0.89516 0.90791 0.93422 0.74119 0.72672 0.81712 0.81806 0.85080 0.91686 0.92354 0.98931 0.98452 0.92483 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.25 71.98 0.59 -2.53 16 2 C 0.18 2.46 1.06 3.60 0.00 2.46 16 3 C -0.15 -0.90 8.57 71.98 0.62 -0.28 16 4 C -0.19 -3.70 8.21 71.98 0.59 -3.11 16 5 N -0.65 -7.92 5.11 -309.91 -1.58 -9.50 16 6 C 0.58 11.89 7.26 179.05 1.30 13.19 16 7 S -0.69 -23.34 19.36 -56.49 -1.09 -24.43 16 8 N -0.61 -9.92 5.33 -190.03 -1.01 -10.93 16 9 C 0.16 3.86 5.92 38.15 0.23 4.08 16 10 C -0.15 -2.87 9.97 22.41 0.22 -2.64 16 11 C -0.07 -1.46 10.03 22.24 0.22 -1.24 16 12 C -0.22 -6.60 9.04 22.39 0.20 -6.40 16 13 C 0.11 4.29 6.68 22.49 0.15 4.44 16 14 O -0.34 -16.14 10.13 -92.33 -0.94 -17.08 16 15 C 0.09 4.02 4.68 71.98 0.34 4.36 16 16 C 0.03 1.58 5.34 29.85 0.16 1.74 16 17 C -0.54 -31.73 9.11 25.60 0.23 -31.49 16 18 H 0.07 3.98 7.74 -2.91 -0.02 3.95 16 19 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 20 N -0.93 -58.94 13.29 21.45 0.28 -58.66 16 21 Si 0.98 44.71 29.54 68.60 2.03 46.74 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 C -0.13 -4.45 7.79 22.49 0.18 -4.28 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.08 2.07 4.95 -13.54 -0.07 2.00 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.09 2.47 4.72 -16.35 -0.08 2.39 16 33 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.42 1.61 8.50 -92.70 -0.79 0.82 16 36 H 0.43 2.68 8.85 -92.71 -0.82 1.86 16 37 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.13 3.95 6.29 -2.91 -0.02 3.93 16 40 H 0.06 2.77 7.67 -2.39 -0.02 2.75 16 41 H 0.06 2.58 7.65 -2.39 -0.02 2.56 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.12 4.79 6.23 -5.10 -0.03 4.76 16 Total: -1.00 -82.86 371.73 2.45 -80.41 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.73 Total: 14.81 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 5.50 Total: -21.37 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -2.31 Total: -79.09 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.94 Total: -17.08 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -23.34 SS G_CDS: -1.09 Total: -24.43 kcal Total: -82.86 2.45 -80.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054955339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.213 kcal (2) G-P(sol) polarization free energy of solvation -82.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds