Wall clock time and date at job start Tue Mar 31 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46875 * 2 1 4 4 C 1.52994 * 109.46878 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.34772 * 120.00104 * 179.97438 * 5 4 3 7 7 S 1.71198 * 120.00336 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99680 * 179.97438 * 6 5 4 9 9 C 1.39884 * 119.99814 * 185.53673 * 8 6 5 10 10 C 1.38936 * 120.04664 * 221.89329 * 9 8 6 11 11 C 1.38113 * 120.04280 * 180.02562 * 10 9 8 12 12 C 1.38213 * 120.12596 * 359.67496 * 11 10 9 13 13 C 1.38761 * 120.08610 * 0.60061 * 12 11 10 14 14 O 1.35901 * 120.02426 * 179.69857 * 13 12 11 15 15 C 1.42898 * 116.99922 * 359.72375 * 14 13 12 16 16 C 1.52993 * 109.47295 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47374 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99785 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99833 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00258 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46846 * 89.99968 * 21 19 17 23 23 H 1.48497 * 109.47063 * 210.00264 * 21 19 17 24 24 H 1.48497 * 109.46934 * 330.00173 * 21 19 17 25 25 C 1.38629 * 119.95937 * 359.42175 * 13 12 11 26 26 H 1.09002 * 109.47453 * 300.00046 * 1 2 3 27 27 H 1.09000 * 109.47168 * 59.99946 * 1 2 3 28 28 H 1.09007 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46737 * 240.00117 * 2 1 3 30 30 H 1.09000 * 109.47168 * 120.00054 * 2 1 3 31 31 H 1.08994 * 109.47346 * 60.00011 * 3 2 1 32 32 H 1.09008 * 109.47012 * 299.99994 * 3 2 1 33 33 H 1.09002 * 109.47728 * 59.99784 * 4 3 2 34 34 H 1.09004 * 109.47174 * 299.99191 * 4 3 2 35 35 H 0.97005 * 119.99483 * 359.97438 * 5 4 3 36 36 H 0.96995 * 119.99710 * 5.53990 * 8 6 5 37 37 H 1.08001 * 119.97877 * 0.02562 * 10 9 8 38 38 H 1.08006 * 119.94097 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.96133 * 180.29719 * 12 11 10 40 40 H 1.09002 * 109.47081 * 300.00303 * 15 14 13 41 41 H 1.09003 * 109.46910 * 60.00196 * 15 14 13 42 42 H 1.09002 * 109.47083 * 300.00032 * 16 15 14 43 43 H 1.08992 * 109.47492 * 59.99754 * 16 15 14 44 44 H 0.97000 * 119.99901 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.06614 * 180.25263 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3833 3.0701 0.0001 7 16 6.4959 1.7689 0.0002 8 7 5.8325 4.3409 0.0001 9 6 7.2025 4.5984 -0.1166 10 6 7.7951 5.5801 0.6678 11 6 9.1476 5.8347 0.5521 12 6 9.9162 5.1096 -0.3389 13 6 9.3288 4.1318 -1.1290 14 8 10.0846 3.4238 -2.0091 15 6 11.4760 3.7429 -2.0726 16 6 12.1572 2.8498 -3.1113 17 6 13.6248 3.1859 -3.1778 18 1 14.0309 3.9595 -2.5430 19 6 14.4489 2.5058 -4.0491 20 7 15.7298 2.7988 -4.1068 21 14 13.7467 1.1672 -5.1466 22 1 13.2971 1.7644 -6.4297 23 1 14.7925 0.1476 -5.4146 24 1 12.5922 0.5256 -4.4678 25 6 7.9714 3.8736 -1.0161 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6765 1.9564 -0.8901 33 1 3.9330 0.9288 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 3.4278 3.5611 0.0003 36 1 5.2058 5.0767 0.0812 37 1 7.1978 6.1445 1.3685 38 1 9.6066 6.5985 1.1624 39 1 10.9745 5.3076 -0.4238 40 1 11.5964 4.7881 -2.3576 41 1 11.9316 3.5778 -1.0961 42 1 12.0368 1.8045 -2.8266 43 1 11.7016 3.0152 -4.0875 44 1 16.3096 2.3205 -4.7200 45 1 7.5132 3.1102 -1.6274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054955351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:11 Heat of formation + Delta-G solvation = -7.314229 kcal Electronic energy + Delta-G solvation = -23438.130846 eV Core-core repulsion = 19967.764865 eV Total energy + Delta-G solvation = -3470.365980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37797 -39.15753 -37.66795 -36.07682 -34.38883 -33.26448 -31.08658 -30.33347 -29.56992 -28.62998 -25.23546 -24.82106 -23.83655 -22.46044 -22.08072 -21.64236 -20.39487 -18.90132 -18.51280 -17.02254 -16.54632 -16.42907 -15.99288 -15.67201 -15.40614 -15.27394 -15.20290 -14.78697 -14.21181 -14.08385 -13.81030 -13.42097 -13.01610 -12.98488 -12.81133 -12.49509 -12.13588 -11.82209 -11.74334 -11.66663 -11.58186 -11.50401 -11.21481 -11.18105 -10.81991 -10.74034 -10.16128 -10.03653 -9.87913 -9.74406 -9.27861 -8.69279 -8.56191 -8.02570 -7.81296 -7.10501 -6.07976 -4.08393 0.80118 1.57435 1.64240 1.79367 2.27493 3.08956 3.34308 3.41460 3.49281 3.87294 3.92105 4.16542 4.33554 4.44849 4.45416 4.81722 4.90491 4.97532 5.05665 5.10802 5.19899 5.26587 5.29498 5.29920 5.34521 5.42380 5.52263 5.57181 5.66031 5.67371 5.74781 5.87275 5.99293 6.01650 6.19051 6.40358 6.41843 6.47897 6.54260 6.69021 6.88436 7.03059 7.18254 7.32091 7.69065 8.01159 8.44612 8.92842 9.52830 11.04488 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.002368 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.215556 B =11819.745181 C =13489.301950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.122 3.878 5 N -0.684 5.684 6 C 0.548 3.452 7 S -0.599 6.599 8 N -0.630 5.630 9 C 0.156 3.844 10 C -0.173 4.173 11 C -0.074 4.074 12 C -0.205 4.205 13 C 0.154 3.846 14 O -0.313 6.313 15 C 0.072 3.928 16 C -0.010 4.010 17 C -0.525 4.525 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.261 1.261 25 C -0.113 4.113 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.396 0.604 36 H 0.405 0.595 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.029 0.971 43 H 0.023 0.977 44 H 0.265 0.735 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.290 3.979 10.886 34.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.172 4.172 4 C -0.002 4.002 5 N -0.313 5.313 6 C 0.192 3.808 7 S -0.471 6.471 8 N -0.256 5.256 9 C 0.064 3.936 10 C -0.194 4.194 11 C -0.093 4.093 12 C -0.224 4.224 13 C 0.106 3.894 14 O -0.226 6.226 15 C -0.002 4.002 16 C -0.047 4.047 17 C -0.563 4.563 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.706 3.294 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.186 1.186 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.242 0.758 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -31.445 2.731 10.649 33.312 hybrid contribution -1.216 0.877 -0.354 1.540 sum -32.661 3.608 10.295 34.435 Atomic orbital electron populations 1.21766 0.95389 1.02038 1.01799 1.21413 0.96110 0.95299 1.03108 1.21880 0.93690 0.98834 1.02748 1.21838 0.93357 0.79772 1.05194 1.45041 1.03351 1.10925 1.71979 1.22499 0.87837 0.89924 0.80582 1.93803 1.49957 1.32205 1.71092 1.42142 1.07847 1.04844 1.70738 1.16889 0.80733 0.98713 0.97303 1.20590 0.95544 1.01838 1.01399 1.20609 0.92561 0.98672 0.97459 1.21474 1.01379 0.99320 1.00256 1.18786 0.90727 0.90389 0.89510 1.86152 1.22859 1.57959 1.55654 1.23082 0.75715 1.00230 1.01146 1.19586 0.95697 0.95731 0.93712 1.20850 0.90246 1.21680 1.23513 0.90744 1.24927 0.94646 0.96800 0.96645 1.69900 1.04127 1.41943 1.37742 0.86770 0.79300 0.82096 0.81230 1.20110 1.21215 1.18584 1.20404 0.91745 1.01307 1.00065 0.92738 0.92697 0.92356 0.91206 0.91276 0.91310 0.91237 0.89213 0.89343 0.76831 0.75787 0.86283 0.85518 0.84805 0.92554 0.92413 0.95272 0.95852 0.92518 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 37.16 0.37 -0.19 16 2 C -0.12 -0.50 5.93 -26.73 -0.16 -0.66 16 3 C -0.13 -0.50 5.33 -26.73 -0.14 -0.64 16 4 C 0.12 0.79 5.13 -4.04 -0.02 0.76 16 5 N -0.68 -4.42 5.56 -62.03 -0.34 -4.76 16 6 C 0.55 5.84 7.74 -86.92 -0.67 5.16 16 7 S -0.60 -9.85 25.06 -107.50 -2.69 -12.54 16 8 N -0.63 -5.77 5.33 -11.42 -0.06 -5.83 16 9 C 0.16 1.98 5.91 -83.73 -0.49 1.49 16 10 C -0.17 -1.95 9.97 -39.37 -0.39 -2.34 16 11 C -0.07 -0.91 10.03 -39.64 -0.40 -1.31 16 12 C -0.20 -3.14 9.04 -39.40 -0.36 -3.50 16 13 C 0.15 2.74 6.68 -39.24 -0.26 2.48 16 14 O -0.31 -6.51 10.13 -19.43 -0.20 -6.70 16 15 C 0.07 1.54 4.68 37.15 0.17 1.72 16 16 C -0.01 -0.25 4.41 -27.89 -0.12 -0.37 16 17 C -0.53 -15.09 9.66 -34.44 -0.33 -15.42 16 18 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 21 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 25 C -0.11 -1.83 7.79 -39.24 -0.31 -2.14 16 26 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.23 8.14 -51.92 -0.42 -0.20 16 33 H 0.09 0.73 7.99 -51.93 -0.42 0.31 16 34 H 0.09 0.70 7.99 -51.93 -0.41 0.28 16 35 H 0.40 1.19 8.49 -40.82 -0.35 0.85 16 36 H 0.40 2.02 8.84 -40.82 -0.36 1.66 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.13 2.01 6.29 -52.49 -0.33 1.68 16 40 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 41 H 0.06 1.19 7.65 -51.93 -0.40 0.80 16 42 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 43 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.15 2.59 6.27 -49.92 -0.31 2.27 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -35.59 381.32 -11.79 -47.38 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.13 Total: -0.89 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -3.21 Total: -12.96 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.37 Total: -37.53 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.20 Total: -6.70 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Atomic # 16 Polarization: -9.85 SS G_CDS: -2.69 Total: -12.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.59 -11.79 -47.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054955351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.069 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds