Wall clock time and date at job start Tue Mar 31 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46875 * 2 1 4 4 C 1.52994 * 109.46878 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.34772 * 120.00104 * 179.97438 * 5 4 3 7 7 S 1.71198 * 120.00336 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99680 * 179.97438 * 6 5 4 9 9 C 1.39884 * 119.99814 * 185.53673 * 8 6 5 10 10 C 1.38936 * 120.04664 * 221.89329 * 9 8 6 11 11 C 1.38113 * 120.04280 * 180.02562 * 10 9 8 12 12 C 1.38213 * 120.12596 * 359.67496 * 11 10 9 13 13 C 1.38761 * 120.08610 * 0.60061 * 12 11 10 14 14 O 1.35901 * 120.02426 * 179.69857 * 13 12 11 15 15 C 1.42898 * 116.99922 * 359.72375 * 14 13 12 16 16 C 1.52993 * 109.47295 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47374 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99785 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99833 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00258 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46846 * 89.99968 * 21 19 17 23 23 H 1.48497 * 109.47063 * 210.00264 * 21 19 17 24 24 H 1.48497 * 109.46934 * 330.00173 * 21 19 17 25 25 C 1.38629 * 119.95937 * 359.42175 * 13 12 11 26 26 H 1.09002 * 109.47453 * 300.00046 * 1 2 3 27 27 H 1.09000 * 109.47168 * 59.99946 * 1 2 3 28 28 H 1.09007 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46737 * 240.00117 * 2 1 3 30 30 H 1.09000 * 109.47168 * 120.00054 * 2 1 3 31 31 H 1.08994 * 109.47346 * 60.00011 * 3 2 1 32 32 H 1.09008 * 109.47012 * 299.99994 * 3 2 1 33 33 H 1.09002 * 109.47728 * 59.99784 * 4 3 2 34 34 H 1.09004 * 109.47174 * 299.99191 * 4 3 2 35 35 H 0.97005 * 119.99483 * 359.97438 * 5 4 3 36 36 H 0.96995 * 119.99710 * 5.53990 * 8 6 5 37 37 H 1.08001 * 119.97877 * 0.02562 * 10 9 8 38 38 H 1.08006 * 119.94097 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.96133 * 180.29719 * 12 11 10 40 40 H 1.09002 * 109.47081 * 300.00303 * 15 14 13 41 41 H 1.09003 * 109.46910 * 60.00196 * 15 14 13 42 42 H 1.09002 * 109.47083 * 300.00032 * 16 15 14 43 43 H 1.08992 * 109.47492 * 59.99754 * 16 15 14 44 44 H 0.97000 * 119.99901 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.06614 * 180.25263 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3833 3.0701 0.0001 7 16 6.4959 1.7689 0.0002 8 7 5.8325 4.3409 0.0001 9 6 7.2025 4.5984 -0.1166 10 6 7.7951 5.5801 0.6678 11 6 9.1476 5.8347 0.5521 12 6 9.9162 5.1096 -0.3389 13 6 9.3288 4.1318 -1.1290 14 8 10.0846 3.4238 -2.0091 15 6 11.4760 3.7429 -2.0726 16 6 12.1572 2.8498 -3.1113 17 6 13.6248 3.1859 -3.1778 18 1 14.0309 3.9595 -2.5430 19 6 14.4489 2.5058 -4.0491 20 7 15.7298 2.7988 -4.1068 21 14 13.7467 1.1672 -5.1466 22 1 13.2971 1.7644 -6.4297 23 1 14.7925 0.1476 -5.4146 24 1 12.5922 0.5256 -4.4678 25 6 7.9714 3.8736 -1.0161 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6765 1.9564 -0.8901 33 1 3.9330 0.9288 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 3.4278 3.5611 0.0003 36 1 5.2058 5.0767 0.0812 37 1 7.1978 6.1445 1.3685 38 1 9.6066 6.5985 1.1624 39 1 10.9745 5.3076 -0.4238 40 1 11.5964 4.7881 -2.3576 41 1 11.9316 3.5778 -1.0961 42 1 12.0368 1.8045 -2.8266 43 1 11.7016 3.0152 -4.0875 44 1 16.3096 2.3205 -4.7200 45 1 7.5132 3.1102 -1.6274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054955351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:11 Heat of formation + Delta-G solvation = -29.924163 kcal Electronic energy + Delta-G solvation = -23439.111286 eV Core-core repulsion = 19967.764865 eV Total energy + Delta-G solvation = -3471.346421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44623 -40.26331 -38.69018 -36.88562 -35.42651 -34.98722 -32.92450 -31.30093 -30.77400 -29.40495 -27.09284 -25.69572 -24.50077 -23.60932 -23.31621 -22.25700 -21.93308 -20.04393 -19.45860 -18.86941 -17.76101 -17.10102 -17.05631 -16.93679 -16.77869 -16.50168 -16.16399 -15.99331 -15.53785 -14.89108 -14.63401 -14.56530 -14.49348 -14.32209 -13.90645 -13.38039 -13.36071 -13.20551 -12.76281 -12.66390 -12.38673 -12.34343 -12.28940 -12.13185 -12.04614 -11.97588 -11.79556 -11.59786 -11.51187 -11.42274 -10.83149 -10.81122 -9.73602 -9.22200 -8.98744 -8.35350 -8.34073 -6.41249 -0.19232 0.54198 0.57915 0.80927 1.33740 1.34014 1.36399 1.49828 2.27469 2.32779 2.56956 2.81647 2.99471 3.74271 3.93841 3.97291 4.08064 4.14884 4.20015 4.23007 4.24865 4.39624 4.41060 4.47422 4.56107 4.62265 4.64180 4.68740 4.88779 4.89293 4.90912 5.09633 5.12467 5.18557 5.25858 5.30283 5.33070 5.38684 5.44861 5.47409 5.49058 5.54168 5.71662 6.00898 6.16483 6.31066 6.57593 6.63692 7.23823 8.80158 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.002368 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.215556 B =11819.745181 C =13489.301950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.122 3.878 5 N -0.650 5.650 6 C 0.578 3.422 7 S -0.720 6.720 8 N -0.608 5.608 9 C 0.159 3.841 10 C -0.150 4.150 11 C -0.069 4.069 12 C -0.215 4.215 13 C 0.113 3.887 14 O -0.338 6.338 15 C 0.088 3.912 16 C -0.007 4.007 17 C -0.534 4.534 18 H 0.046 0.954 19 C 0.016 3.984 20 N -0.940 5.940 21 Si 0.944 3.056 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.258 1.258 25 C -0.126 4.126 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.421 0.579 36 H 0.432 0.568 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.129 0.871 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.021 0.979 43 H 0.026 0.974 44 H 0.270 0.730 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.064 5.925 12.002 38.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.001 4.001 5 N -0.278 5.278 6 C 0.215 3.785 7 S -0.594 6.594 8 N -0.236 5.236 9 C 0.065 3.935 10 C -0.170 4.170 11 C -0.088 4.088 12 C -0.235 4.235 13 C 0.067 3.933 14 O -0.253 6.253 15 C 0.013 3.987 16 C -0.045 4.045 17 C -0.572 4.572 18 H 0.064 0.936 19 C -0.182 4.182 20 N -0.579 5.579 21 Si 0.768 3.232 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.182 1.182 25 C -0.149 4.149 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.262 0.738 36 H 0.275 0.725 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -35.313 4.732 11.780 37.526 hybrid contribution -0.227 0.411 -0.577 0.744 sum -35.540 5.143 11.203 37.617 Atomic orbital electron populations 1.21749 0.94662 1.02120 1.02285 1.21427 0.96679 0.95555 1.02566 1.21805 0.90941 0.98840 1.04203 1.21877 0.95357 0.79176 1.03738 1.44949 1.02069 1.12161 1.68644 1.21748 0.88136 0.88806 0.79771 1.94126 1.52921 1.35929 1.76382 1.41844 1.07212 1.04976 1.69533 1.16958 0.81869 0.98247 0.96407 1.21068 0.95416 1.00317 1.00245 1.21045 0.92971 0.98389 0.96387 1.21586 1.01607 0.99393 1.00888 1.19082 0.91213 0.92163 0.90872 1.86053 1.22152 1.59527 1.57533 1.22667 0.76642 0.99572 0.99801 1.19446 0.93964 0.95984 0.95099 1.21097 0.92259 1.20941 1.22929 0.93585 1.25815 0.94917 0.99253 0.98220 1.70017 1.05517 1.43474 1.38938 0.85738 0.78772 0.79193 0.79520 1.18699 1.20222 1.18165 1.20361 0.91585 1.01619 1.01309 0.92092 0.92305 0.92591 0.92026 0.91751 0.89570 0.89912 0.91035 0.90665 0.73784 0.72479 0.81643 0.81983 0.85326 0.91786 0.92566 0.96093 0.95588 0.92077 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 71.98 0.71 -0.11 16 2 C -0.12 -0.87 5.93 30.60 0.18 -0.68 16 3 C -0.12 -0.58 5.33 30.59 0.16 -0.41 16 4 C 0.12 1.41 5.13 86.38 0.44 1.86 16 5 N -0.65 -6.55 5.56 -350.15 -1.95 -8.50 16 6 C 0.58 11.27 7.74 179.05 1.39 12.66 16 7 S -0.72 -24.66 25.06 -56.49 -1.42 -26.08 16 8 N -0.61 -9.08 5.33 -190.04 -1.01 -10.10 16 9 C 0.16 3.66 5.91 38.15 0.23 3.88 16 10 C -0.15 -2.74 9.97 22.41 0.22 -2.51 16 11 C -0.07 -1.49 10.03 22.23 0.22 -1.26 16 12 C -0.22 -6.52 9.04 22.39 0.20 -6.32 16 13 C 0.11 4.14 6.68 22.49 0.15 4.29 16 14 O -0.34 -14.75 10.13 -92.44 -0.94 -15.69 16 15 C 0.09 3.89 4.68 71.98 0.34 4.23 16 16 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 17 C -0.53 -31.76 9.66 25.60 0.25 -31.51 16 18 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 19 C 0.02 0.98 5.47 84.65 0.46 1.44 16 20 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 21 Si 0.94 46.28 27.47 68.60 1.88 48.17 16 22 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.26 -12.37 6.54 99.48 0.65 -11.72 16 25 C -0.13 -4.15 7.79 22.49 0.18 -3.97 16 26 H 0.06 0.26 8.14 -2.39 -0.02 0.25 16 27 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 33 H 0.07 1.17 7.99 -2.39 -0.02 1.15 16 34 H 0.08 1.16 7.99 -2.39 -0.02 1.14 16 35 H 0.42 0.54 8.49 -92.70 -0.79 -0.25 16 36 H 0.43 2.00 8.84 -92.71 -0.82 1.18 16 37 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.13 3.93 6.29 -2.91 -0.02 3.91 16 40 H 0.06 2.67 7.67 -2.39 -0.02 2.65 16 41 H 0.06 2.45 7.65 -2.39 -0.02 2.43 16 42 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 43 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 44 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 45 H 0.12 4.62 6.27 -4.54 -0.03 4.59 16 Total: -1.00 -83.69 381.32 1.46 -82.22 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -0.68 Total: 7.60 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 5.27 Total: -18.68 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.66 Total: -77.54 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.94 Total: -15.69 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.17 kcal Atomic # 16 Polarization: -24.66 SS G_CDS: -1.42 Total: -26.08 kcal Total: -83.69 1.46 -82.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054955351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.300 kcal (2) G-P(sol) polarization free energy of solvation -83.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds