Wall clock time and date at job start Tue Mar 31 2020 14:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 C 1.53001 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47154 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00069 * 179.72269 * 5 4 3 7 7 O 1.21601 * 119.99854 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00356 * 179.97438 * 6 5 4 9 9 C 1.40191 * 120.00213 * 174.72114 * 8 6 5 10 10 C 1.38627 * 120.09664 * 33.75557 * 9 8 6 11 11 C 1.38265 * 120.01338 * 179.97438 * 10 9 8 12 12 C 1.38295 * 120.20297 * 359.97438 * 11 10 9 13 13 C 1.38208 * 120.19324 * 0.02562 * 12 11 10 14 14 C 1.38772 * 119.99072 * 359.72112 * 13 12 11 15 15 S 1.76201 * 120.10421 * 180.27770 * 14 13 12 16 16 C 1.81402 * 102.99911 * 0.12092 * 15 14 13 17 17 H 1.08999 * 109.47448 * 46.12524 * 16 15 14 18 18 C 1.53003 * 109.46829 * 286.12591 * 16 15 14 19 19 C 1.50697 * 109.47253 * 166.13049 * 16 15 14 20 20 H 1.08004 * 119.99956 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00304 * 180.02562 * 19 16 15 22 22 N 1.31519 * 120.00068 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 120.00457 * 179.97438 * 21 19 16 24 24 H 1.48497 * 109.47392 * 89.99520 * 23 21 19 25 25 H 1.48503 * 109.47487 * 209.99704 * 23 21 19 26 26 H 1.48502 * 109.46771 * 329.99687 * 23 21 19 27 27 H 1.09002 * 109.46815 * 60.00473 * 1 2 3 28 28 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47429 * 300.00606 * 1 2 3 30 30 H 1.08993 * 109.47015 * 239.99517 * 2 1 3 31 31 H 1.09002 * 109.46815 * 119.99527 * 2 1 3 32 32 H 1.08999 * 109.47507 * 59.99442 * 3 2 1 33 33 H 1.09002 * 109.46933 * 299.99454 * 3 2 1 34 34 H 1.08999 * 109.47429 * 59.99394 * 4 3 2 35 35 H 1.09002 * 109.46815 * 299.99527 * 4 3 2 36 36 H 0.97001 * 120.00078 * 359.97438 * 5 4 3 37 37 H 0.97007 * 119.99832 * 354.73762 * 8 6 5 38 38 H 1.08006 * 119.99313 * 0.02562 * 10 9 8 39 39 H 1.07997 * 119.90077 * 179.97438 * 11 10 9 40 40 H 1.07994 * 119.89793 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.00027 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.47467 * 304.12279 * 18 16 15 43 43 H 1.08994 * 109.47257 * 64.13005 * 18 16 15 44 44 H 1.09001 * 109.46708 * 184.12402 * 18 16 15 45 45 H 0.97000 * 120.00505 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 5.3834 3.0700 0.0038 7 8 6.1736 2.1457 0.0083 8 7 5.8327 4.3406 0.0027 9 6 7.2057 4.5987 0.1196 10 6 8.1271 3.7252 -0.4369 11 6 9.4808 3.9817 -0.3210 12 6 9.9204 5.1090 0.3487 13 6 9.0092 5.9856 0.9067 14 6 7.6486 5.7387 0.7906 15 16 6.4841 6.8582 1.4945 16 6 7.5403 8.1339 2.2345 17 1 8.3142 8.4225 1.5232 18 6 8.1938 7.5821 3.5031 19 6 6.7042 9.3382 2.5833 20 1 5.6435 9.3365 2.3797 21 6 7.2934 10.4426 3.1613 22 7 8.5851 10.4449 3.4087 23 14 6.2572 11.9356 3.5929 24 1 5.7400 11.7956 4.9779 25 1 7.0905 13.1611 3.4972 26 1 5.1171 12.0372 2.6468 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 3.4280 3.5610 -0.0016 37 1 5.2060 5.0766 -0.0788 38 1 7.7875 2.8444 -0.9617 39 1 10.1971 3.2997 -0.7548 40 1 10.9789 5.3043 0.4366 41 1 9.3560 6.8653 1.4286 42 1 7.4211 7.2259 4.1845 43 1 8.8559 6.7568 3.2413 44 1 8.7700 8.3705 3.9874 45 1 8.9996 11.2217 3.8157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066954491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:19 Heat of formation + Delta-G solvation = -23.252322 kcal Electronic energy + Delta-G solvation = -24092.817757 eV Core-core repulsion = 20621.760649 eV Total energy + Delta-G solvation = -3471.057108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46426 -38.39859 -36.47041 -34.62748 -34.12520 -33.86237 -31.06801 -29.99350 -29.78439 -28.32558 -25.39760 -24.04735 -22.65185 -22.26131 -21.65846 -21.27023 -20.52847 -18.39464 -17.74116 -16.73110 -16.25918 -16.10538 -15.48003 -15.23673 -15.14909 -14.68711 -14.30517 -14.15606 -13.88958 -13.69369 -13.44143 -13.33640 -12.78922 -12.68004 -12.53731 -11.95556 -11.89448 -11.71507 -11.49452 -11.47107 -11.29107 -11.07764 -11.05087 -11.00579 -10.63947 -10.50807 -10.25761 -10.08225 -9.79191 -9.46496 -9.22015 -9.08057 -8.96144 -8.53098 -7.93214 -6.54773 -6.24859 -4.34385 1.62762 1.78712 2.40403 2.68804 3.19528 3.19862 3.26309 3.29990 3.60715 4.14723 4.17982 4.26876 4.46737 4.56726 4.71599 5.02883 5.07128 5.16176 5.28489 5.35314 5.39392 5.41721 5.52993 5.61525 5.65009 5.73175 5.87972 5.88822 5.89556 5.93995 6.27774 6.33545 6.48012 6.54404 6.63810 6.72686 6.79164 6.81895 6.93565 6.97983 7.28455 7.38012 7.57678 7.74423 7.93573 7.99054 8.54556 8.64423 9.29915 10.80944 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.002975 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.029914 B = 9407.954947 C =11372.941795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.138 3.862 5 N -0.745 5.745 6 C 0.706 3.294 7 O -0.579 6.579 8 N -0.675 5.675 9 C 0.164 3.836 10 C -0.109 4.109 11 C -0.125 4.125 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.090 4.090 15 S -0.175 6.175 16 C 0.099 3.901 17 H 0.052 0.948 18 C -0.144 4.144 19 C -0.510 4.510 20 H 0.067 0.933 21 C 0.070 3.930 22 N -0.885 5.885 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.271 1.271 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.409 0.591 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.139 0.861 42 H 0.038 0.962 43 H 0.021 0.979 44 H 0.096 0.904 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.957 -15.557 -7.516 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.171 4.171 4 C 0.014 3.986 5 N -0.401 5.401 6 C 0.406 3.594 7 O -0.456 6.456 8 N -0.322 5.322 9 C 0.063 3.937 10 C -0.131 4.131 11 C -0.147 4.147 12 C -0.139 4.139 13 C -0.143 4.143 14 C -0.205 4.205 15 S 0.073 5.927 16 C -0.028 4.028 17 H 0.070 0.930 18 C -0.203 4.203 19 C -0.550 4.550 20 H 0.085 0.915 21 C -0.134 4.134 22 N -0.523 5.523 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.245 0.755 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.156 0.844 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.115 0.885 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.447 -16.266 -7.367 20.202 hybrid contribution 0.308 1.617 0.298 1.673 sum -9.139 -14.650 -7.069 18.658 Atomic orbital electron populations 1.21767 0.95517 1.01767 1.01954 1.21424 0.96075 0.95859 1.02572 1.21848 0.94152 0.98111 1.02985 1.21227 0.93290 0.81629 1.02440 1.45111 1.05221 1.09278 1.80490 1.15859 0.82685 0.83049 0.77760 1.90897 1.54390 1.43205 1.57111 1.42531 1.06873 1.06966 1.75864 1.16938 0.81875 0.95472 0.99438 1.21154 0.92259 0.99813 0.99884 1.20935 0.95019 0.97762 1.00990 1.21027 0.99209 0.94846 0.98817 1.21326 0.91229 1.00800 1.00936 1.21785 0.97787 0.99223 1.01730 1.84999 1.16815 1.24046 1.66855 1.21092 0.94994 0.90911 0.95788 0.92993 1.22137 0.99787 0.99693 0.98732 1.20636 0.94924 0.97525 1.41912 0.91536 1.24896 0.95188 0.98457 0.94869 1.69856 1.09693 1.30363 1.42373 0.86352 0.79998 0.81360 0.78957 1.20371 1.20935 1.19615 0.92681 0.92622 0.92615 0.91644 0.91575 0.91087 0.91221 0.91601 0.91521 0.76793 0.75502 0.84255 0.86264 0.86235 0.84352 0.94256 0.96030 0.88547 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.13 -0.87 5.33 -26.73 -0.14 -1.01 16 4 C 0.14 1.28 5.67 -4.04 -0.02 1.26 16 5 N -0.75 -8.07 5.56 -65.22 -0.36 -8.43 16 6 C 0.71 10.60 8.42 -86.92 -0.73 9.86 16 7 O -0.58 -10.45 13.68 5.28 0.07 -10.38 16 8 N -0.68 -10.39 5.05 -14.06 -0.07 -10.46 16 9 C 0.16 2.92 6.34 -83.42 -0.53 2.39 16 10 C -0.11 -1.85 8.71 -39.43 -0.34 -2.20 16 11 C -0.13 -1.93 10.04 -39.55 -0.40 -2.33 16 12 C -0.12 -1.91 10.04 -39.57 -0.40 -2.31 16 13 C -0.12 -2.23 8.27 -39.39 -0.33 -2.56 16 14 C -0.09 -1.74 6.11 -38.91 -0.24 -1.98 16 15 S -0.17 -3.64 20.06 -107.50 -2.16 -5.80 16 16 C 0.10 2.40 1.97 -27.88 -0.05 2.35 16 17 H 0.05 1.34 6.88 -51.92 -0.36 0.98 16 18 C -0.14 -3.38 8.64 37.16 0.32 -3.05 16 19 C -0.51 -13.41 8.58 -34.44 -0.30 -13.71 16 20 H 0.07 1.75 7.71 -52.48 -0.40 1.35 16 21 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 22 N -0.89 -23.79 11.30 55.43 0.63 -23.17 16 23 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 3.34 8.49 -40.82 -0.35 2.99 16 37 H 0.41 5.63 7.94 -40.82 -0.32 5.30 16 38 H 0.14 2.37 6.10 -52.48 -0.32 2.05 16 39 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.14 2.77 4.64 -52.48 -0.24 2.53 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.02 0.45 6.05 -51.93 -0.31 0.14 16 44 H 0.10 2.45 5.97 -51.93 -0.31 2.14 16 45 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -29.60 375.41 -11.13 -40.73 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.83 Total: 9.39 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.04 Total: -12.87 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.19 Total: -42.06 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -2.16 Total: -5.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.60 -11.13 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066954491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.478 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds