Wall clock time and date at job start Tue Mar 31 2020 14:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 C 1.53001 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47154 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00069 * 179.72269 * 5 4 3 7 7 O 1.21601 * 119.99854 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00356 * 179.97438 * 6 5 4 9 9 C 1.40191 * 120.00213 * 174.72114 * 8 6 5 10 10 C 1.38627 * 120.09664 * 33.75557 * 9 8 6 11 11 C 1.38265 * 120.01338 * 179.97438 * 10 9 8 12 12 C 1.38295 * 120.20297 * 359.97438 * 11 10 9 13 13 C 1.38208 * 120.19324 * 0.02562 * 12 11 10 14 14 C 1.38772 * 119.99072 * 359.72112 * 13 12 11 15 15 S 1.76201 * 120.10421 * 180.27770 * 14 13 12 16 16 C 1.81402 * 102.99911 * 0.12092 * 15 14 13 17 17 H 1.08999 * 109.47448 * 46.12524 * 16 15 14 18 18 C 1.53003 * 109.46829 * 286.12591 * 16 15 14 19 19 C 1.50697 * 109.47253 * 166.13049 * 16 15 14 20 20 H 1.08004 * 119.99956 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00304 * 180.02562 * 19 16 15 22 22 N 1.31519 * 120.00068 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 120.00457 * 179.97438 * 21 19 16 24 24 H 1.48497 * 109.47392 * 89.99520 * 23 21 19 25 25 H 1.48503 * 109.47487 * 209.99704 * 23 21 19 26 26 H 1.48502 * 109.46771 * 329.99687 * 23 21 19 27 27 H 1.09002 * 109.46815 * 60.00473 * 1 2 3 28 28 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47429 * 300.00606 * 1 2 3 30 30 H 1.08993 * 109.47015 * 239.99517 * 2 1 3 31 31 H 1.09002 * 109.46815 * 119.99527 * 2 1 3 32 32 H 1.08999 * 109.47507 * 59.99442 * 3 2 1 33 33 H 1.09002 * 109.46933 * 299.99454 * 3 2 1 34 34 H 1.08999 * 109.47429 * 59.99394 * 4 3 2 35 35 H 1.09002 * 109.46815 * 299.99527 * 4 3 2 36 36 H 0.97001 * 120.00078 * 359.97438 * 5 4 3 37 37 H 0.97007 * 119.99832 * 354.73762 * 8 6 5 38 38 H 1.08006 * 119.99313 * 0.02562 * 10 9 8 39 39 H 1.07997 * 119.90077 * 179.97438 * 11 10 9 40 40 H 1.07994 * 119.89793 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.00027 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.47467 * 304.12279 * 18 16 15 43 43 H 1.08994 * 109.47257 * 64.13005 * 18 16 15 44 44 H 1.09001 * 109.46708 * 184.12402 * 18 16 15 45 45 H 0.97000 * 120.00505 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 5.3834 3.0700 0.0038 7 8 6.1736 2.1457 0.0083 8 7 5.8327 4.3406 0.0027 9 6 7.2057 4.5987 0.1196 10 6 8.1271 3.7252 -0.4369 11 6 9.4808 3.9817 -0.3210 12 6 9.9204 5.1090 0.3487 13 6 9.0092 5.9856 0.9067 14 6 7.6486 5.7387 0.7906 15 16 6.4841 6.8582 1.4945 16 6 7.5403 8.1339 2.2345 17 1 8.3142 8.4225 1.5232 18 6 8.1938 7.5821 3.5031 19 6 6.7042 9.3382 2.5833 20 1 5.6435 9.3365 2.3797 21 6 7.2934 10.4426 3.1613 22 7 8.5851 10.4449 3.4087 23 14 6.2572 11.9356 3.5929 24 1 5.7400 11.7956 4.9779 25 1 7.0905 13.1611 3.4972 26 1 5.1171 12.0372 2.6468 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 3.4280 3.5610 -0.0016 37 1 5.2060 5.0766 -0.0788 38 1 7.7875 2.8444 -0.9617 39 1 10.1971 3.2997 -0.7548 40 1 10.9789 5.3043 0.4366 41 1 9.3560 6.8653 1.4286 42 1 7.4211 7.2259 4.1845 43 1 8.8559 6.7568 3.2413 44 1 8.7700 8.3705 3.9874 45 1 8.9996 11.2217 3.8157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066954491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:18 Heat of formation + Delta-G solvation = -38.934474 kcal Electronic energy + Delta-G solvation = -24093.497786 eV Core-core repulsion = 20621.760649 eV Total energy + Delta-G solvation = -3471.737137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67944 -39.66261 -37.26378 -36.25085 -35.70215 -34.67958 -32.78788 -31.56804 -30.87443 -29.24524 -27.39021 -24.90850 -23.95390 -23.64986 -22.93725 -22.31870 -21.63679 -19.62392 -19.11134 -18.23419 -17.83209 -17.06705 -16.96862 -16.50663 -16.23937 -15.96193 -15.68038 -15.43055 -15.07484 -14.91496 -14.45533 -14.40810 -14.34973 -13.98467 -13.72616 -13.26598 -13.22954 -12.93736 -12.86936 -12.71777 -12.49889 -12.47033 -12.24399 -12.06673 -11.97328 -11.82427 -11.50477 -11.47508 -11.37795 -11.08804 -10.81324 -10.56709 -10.45559 -10.19796 -9.25905 -8.23571 -8.13094 -6.40480 0.27689 0.40652 0.84730 1.42204 1.43249 1.53473 1.55198 1.87471 2.00559 2.38506 2.82625 3.05859 3.12232 3.86495 3.94030 4.03642 4.17120 4.20397 4.39912 4.46542 4.51483 4.55766 4.59760 4.64871 4.66901 4.82003 4.87549 4.92976 4.94192 4.95635 5.05848 5.19899 5.26226 5.30970 5.33341 5.37585 5.41343 5.48485 5.51979 5.57578 5.61332 5.75517 5.87284 6.02751 6.06929 6.62056 6.86912 7.27039 7.39205 8.81682 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.002975 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.029914 B = 9407.954947 C =11372.941795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.123 4.123 4 C 0.137 3.863 5 N -0.729 5.729 6 C 0.702 3.298 7 O -0.610 6.610 8 N -0.673 5.673 9 C 0.161 3.839 10 C -0.117 4.117 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.134 4.134 14 C -0.113 4.113 15 S -0.166 6.166 16 C 0.096 3.904 17 H 0.027 0.973 18 C -0.129 4.129 19 C -0.531 4.531 20 H 0.061 0.939 21 C 0.026 3.974 22 N -0.909 5.909 23 Si 0.968 3.032 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.267 1.267 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.412 0.588 37 H 0.415 0.585 38 H 0.141 0.859 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.120 0.880 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.075 0.925 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 -16.478 -8.237 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.160 4.160 4 C 0.014 3.986 5 N -0.385 5.385 6 C 0.403 3.597 7 O -0.490 6.490 8 N -0.321 5.321 9 C 0.060 3.940 10 C -0.139 4.139 11 C -0.131 4.131 12 C -0.137 4.137 13 C -0.158 4.158 14 C -0.229 4.229 15 S 0.080 5.920 16 C -0.032 4.032 17 H 0.045 0.955 18 C -0.189 4.189 19 C -0.570 4.570 20 H 0.079 0.921 21 C -0.176 4.176 22 N -0.547 5.547 23 Si 0.792 3.208 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.192 1.192 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.248 0.752 37 H 0.252 0.748 38 H 0.159 0.841 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.138 0.862 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.292 -17.196 -8.099 21.616 hybrid contribution 0.595 1.763 0.441 1.913 sum -9.697 -15.433 -7.658 19.770 Atomic orbital electron populations 1.21759 0.94905 1.02140 1.02117 1.21428 0.96546 0.95343 1.02608 1.21786 0.91808 0.98772 1.03676 1.21353 0.95121 0.80441 1.01708 1.45081 1.03964 1.10574 1.78855 1.16028 0.83705 0.82380 0.77630 1.90866 1.55568 1.43938 1.58656 1.42501 1.06271 1.07500 1.75822 1.17081 0.83164 0.94926 0.98857 1.21339 0.92961 0.99647 0.99983 1.21351 0.95060 0.97482 0.99208 1.21320 1.00209 0.94274 0.97895 1.21325 0.91682 1.01031 1.01764 1.21776 0.97724 0.99837 1.03541 1.84673 1.16394 1.23482 1.67436 1.20845 0.94836 0.91893 0.95597 0.95460 1.21953 0.99443 0.99268 0.98238 1.20899 0.94914 0.98798 1.42381 0.92108 1.25681 0.96254 1.01015 0.94637 1.69964 1.10949 1.31090 1.42684 0.85403 0.78564 0.78074 0.78761 1.19843 1.20430 1.19190 0.92330 0.92205 0.92634 0.91422 0.91832 0.90714 0.90164 0.91923 0.92707 0.75189 0.74783 0.84098 0.82602 0.83401 0.86237 0.94710 0.94702 0.90683 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.12 -1.25 5.93 30.60 0.18 -1.07 16 3 C -0.12 -1.38 5.33 30.60 0.16 -1.21 16 4 C 0.14 2.39 5.67 86.38 0.49 2.88 16 5 N -0.73 -14.87 5.56 -478.53 -2.66 -17.53 16 6 C 0.70 20.48 8.42 179.06 1.51 21.99 16 7 O -0.61 -21.63 13.68 -4.03 -0.06 -21.68 16 8 N -0.67 -20.28 5.05 -316.67 -1.60 -21.88 16 9 C 0.16 5.65 6.34 38.20 0.24 5.89 16 10 C -0.12 -3.80 8.71 22.37 0.19 -3.61 16 11 C -0.11 -3.10 10.04 22.29 0.22 -2.87 16 12 C -0.12 -3.55 10.04 22.28 0.22 -3.32 16 13 C -0.13 -5.03 8.27 22.39 0.19 -4.84 16 14 C -0.11 -4.40 6.11 22.70 0.14 -4.26 16 15 S -0.17 -7.03 20.06 -56.49 -1.13 -8.16 16 16 C 0.10 4.78 1.97 29.85 0.06 4.84 16 17 H 0.03 1.48 6.88 -2.39 -0.02 1.46 16 18 C -0.13 -6.23 8.64 71.98 0.62 -5.61 16 19 C -0.53 -28.41 8.58 25.60 0.22 -28.19 16 20 H 0.06 3.25 7.71 -2.91 -0.02 3.22 16 21 C 0.03 1.37 5.29 84.65 0.45 1.82 16 22 N -0.91 -49.71 11.30 21.45 0.24 -49.47 16 23 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.41 6.21 8.49 -92.71 -0.79 5.42 16 37 H 0.41 11.17 7.94 -92.70 -0.74 10.43 16 38 H 0.14 4.58 6.10 -2.91 -0.02 4.56 16 39 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.12 4.93 4.64 -2.91 -0.01 4.91 16 42 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.03 1.53 6.05 -2.39 -0.01 1.51 16 44 H 0.07 3.93 5.97 -2.39 -0.01 3.91 16 45 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -63.98 375.41 1.92 -62.06 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.51 Total: 31.07 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 5.61 Total: -18.24 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -4.02 Total: -88.87 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.68 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -1.13 Total: -8.16 kcal Total: -63.98 1.92 -62.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066954491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.128 kcal (2) G-P(sol) polarization free energy of solvation -63.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds