Wall clock time and date at job start Tue Mar 31 2020 14:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 C 1.53001 * 109.47028 * 239.99921 * 2 1 3 5 5 N 1.46892 * 109.46990 * 119.99964 * 2 1 3 6 6 C 1.46901 * 111.00187 * 60.00047 * 5 2 1 7 7 C 1.53004 * 109.47312 * 180.02562 * 6 5 2 8 8 N 1.46503 * 109.47087 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99774 * 179.97438 * 8 7 6 10 10 O 1.21552 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.47860 * 120.00133 * 179.97438 * 9 8 7 12 12 C 1.39674 * 120.09890 * 359.72892 * 11 9 8 13 13 C 1.38037 * 120.04028 * 179.74115 * 12 11 9 14 14 C 1.38177 * 120.24389 * 0.55880 * 13 12 11 15 15 C 1.39185 * 120.19819 * 359.69585 * 14 13 12 16 16 S 1.76202 * 120.01737 * 180.02562 * 15 14 13 17 17 C 1.76203 * 99.99892 * 265.52509 * 16 15 14 18 18 H 1.08004 * 120.00108 * 5.12862 * 17 16 15 19 19 C 1.38725 * 120.00122 * 185.11676 * 17 16 15 20 20 N 1.31632 * 119.99963 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00075 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46824 * 90.00392 * 21 19 17 23 23 H 1.48501 * 109.47000 * 210.00262 * 21 19 17 24 24 H 1.48496 * 109.46956 * 330.00370 * 21 19 17 25 25 C 1.38875 * 119.95891 * 0.02562 * 15 14 13 26 26 H 1.09004 * 109.47027 * 300.00459 * 1 2 3 27 27 H 1.09005 * 109.46794 * 60.00143 * 1 2 3 28 28 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46811 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46620 * 300.00083 * 3 2 1 31 31 H 1.08995 * 109.46997 * 59.99983 * 3 2 1 32 32 H 1.09004 * 109.47142 * 300.00391 * 4 2 1 33 33 H 1.09003 * 109.46699 * 60.00006 * 4 2 1 34 34 H 1.09003 * 109.46871 * 180.02562 * 4 2 1 35 35 H 1.00905 * 110.99961 * 183.95258 * 5 2 1 36 36 H 1.09003 * 109.47002 * 59.99779 * 6 5 2 37 37 H 1.09002 * 109.47016 * 300.00040 * 6 5 2 38 38 H 1.09001 * 109.46647 * 299.99380 * 7 6 5 39 39 H 1.08991 * 109.47166 * 59.99246 * 7 6 5 40 40 H 0.97000 * 119.99807 * 359.97438 * 8 7 6 41 41 H 1.08011 * 119.98232 * 0.02562 * 12 11 9 42 42 H 1.08006 * 119.88021 * 180.25597 * 13 12 11 43 43 H 1.07994 * 119.90317 * 179.71961 * 14 13 12 44 44 H 0.96998 * 119.99543 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.11653 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.5487 -2.0835 1.2334 7 6 2.0772 -2.7703 2.4943 8 7 1.6079 -4.1577 2.5278 9 6 1.9524 -4.9609 3.5538 10 8 2.6519 -4.5341 4.4515 11 6 1.4783 -6.3611 3.5880 12 6 0.6688 -6.8518 2.5610 13 6 0.2314 -8.1607 2.5914 14 6 0.5817 -8.9874 3.6417 15 6 1.3836 -8.5073 4.6732 16 16 1.8280 -9.5658 6.0099 17 6 0.5632 -9.1489 7.1637 18 1 -0.2295 -8.4742 6.8758 19 6 0.5856 -9.6874 8.4420 20 7 1.5518 -10.5094 8.7931 21 14 -0.7557 -9.2459 9.6651 22 1 -1.8739 -10.2157 9.5448 23 1 -0.2044 -9.2945 11.0431 24 1 -1.2548 -7.8768 9.3796 25 6 1.8331 -7.1935 4.6481 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7217 -1.2490 35 1 3.0263 -0.6501 1.2558 36 1 1.9122 -2.6118 0.3519 37 1 0.4588 -2.0979 1.2419 38 1 3.1671 -2.7559 2.4861 39 1 1.7135 -2.2419 3.3754 40 1 1.0494 -4.4982 1.8116 41 1 0.3888 -6.2081 1.7401 42 1 -0.3910 -8.5387 1.7938 43 1 0.2327 -10.0091 3.6622 44 1 1.5676 -10.8856 9.6870 45 1 2.4557 -6.8185 5.4468 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080029698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:31 Heat of formation + Delta-G solvation = -23.053112 kcal Electronic energy + Delta-G solvation = -23591.016960 eV Core-core repulsion = 20119.968491 eV Total energy + Delta-G solvation = -3471.048470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99636 -38.88890 -37.80328 -35.25657 -32.51618 -32.49267 -30.83967 -30.50872 -28.08863 -27.77078 -27.43727 -25.56221 -23.72669 -22.58367 -21.93934 -20.47991 -19.63388 -18.33501 -17.38938 -16.44773 -16.26997 -15.83037 -15.40913 -15.23116 -14.97875 -14.83898 -14.63781 -14.35204 -14.24617 -13.70142 -13.55915 -13.36771 -13.00310 -12.89313 -12.53964 -12.33328 -12.29421 -12.16245 -11.89809 -11.67350 -11.56897 -11.41015 -11.15115 -11.13261 -11.10814 -11.07278 -10.70084 -9.97718 -9.78923 -9.18760 -9.15540 -9.00487 -8.86933 -8.58737 -8.03052 -6.70694 -6.27831 -4.01843 1.16268 1.66324 2.94515 3.05041 3.20852 3.23993 3.29169 3.46971 3.85068 4.09319 4.26757 4.34066 4.42520 4.57849 4.67702 4.76954 4.90841 5.05726 5.07340 5.09107 5.12625 5.17158 5.23367 5.31829 5.35434 5.43364 5.44721 5.48099 5.60384 5.64517 5.69528 5.77045 5.81974 5.87333 5.88346 5.99066 6.24745 6.31939 6.58232 6.59448 6.63007 6.93019 6.93576 7.18739 7.47086 7.58414 8.28797 8.33523 9.18024 10.78873 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.002162 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.552430 B =12945.071605 C =13452.462440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.183 4.183 5 N -0.675 5.675 6 C 0.043 3.957 7 C 0.122 3.878 8 N -0.732 5.732 9 C 0.564 3.436 10 O -0.532 6.532 11 C -0.154 4.154 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.055 4.055 15 C -0.107 4.107 16 S -0.035 6.035 17 C -0.519 4.519 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.271 1.271 25 C -0.018 4.018 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.344 0.656 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.398 0.602 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.270 0.730 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 17.860 -21.480 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 C -0.197 4.197 4 C -0.242 4.242 5 N -0.306 5.306 6 C -0.087 4.087 7 C -0.002 4.002 8 N -0.386 5.386 9 C 0.353 3.647 10 O -0.409 6.409 11 C -0.159 4.159 12 C -0.109 4.109 13 C -0.161 4.161 14 C -0.076 4.076 15 C -0.218 4.218 16 S 0.200 5.800 17 C -0.667 4.667 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.505 5.505 21 Si 0.747 3.253 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.196 1.196 25 C -0.040 4.040 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.233 0.767 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.079 0.921 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.943 17.529 -20.114 26.697 hybrid contribution -1.519 0.576 -0.512 1.703 sum -2.462 18.105 -20.626 27.555 Atomic orbital electron populations 1.21906 0.93676 1.02097 1.02228 1.20961 0.95719 0.94225 0.87705 1.21823 1.00948 0.94577 1.02354 1.22580 1.01315 1.01264 0.99066 1.60522 1.16546 1.13882 1.39693 1.22194 1.01378 0.88782 0.96343 1.21195 0.99387 0.81157 0.98498 1.45771 1.54886 1.12155 1.25803 1.18386 0.79625 0.85523 0.81212 1.90783 1.37494 1.75870 1.36756 1.19851 1.04030 0.93482 0.98536 1.21124 0.96875 0.95930 0.97012 1.21055 1.01879 0.93896 0.99279 1.21963 0.93506 0.99848 0.92308 1.22865 0.99578 0.97843 1.01468 1.83604 1.41772 1.48291 1.06365 1.22837 1.10941 1.34111 0.98791 0.90607 1.25010 0.96670 0.94652 0.97294 1.69991 1.31140 1.29048 1.20351 0.86115 0.80643 0.79077 0.79460 1.20175 1.20637 1.19552 1.21957 0.94741 0.91926 0.95390 0.91636 0.92289 0.92543 0.92675 0.92093 0.91593 0.92250 0.91949 0.92576 0.83787 0.94164 0.89973 0.91652 0.90487 0.76710 0.86587 0.85868 0.85060 0.92060 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.24 37.16 0.31 -0.54 16 2 C 0.10 0.63 0.97 -131.60 -0.13 0.50 16 3 C -0.14 -0.75 8.73 37.16 0.32 -0.43 16 4 C -0.18 -0.99 8.23 37.16 0.31 -0.68 16 5 N -0.67 -4.74 6.09 -99.96 -0.61 -5.35 16 6 C 0.04 0.31 5.01 -3.82 -0.02 0.29 16 7 C 0.12 1.23 5.93 -4.04 -0.02 1.21 16 8 N -0.73 -8.36 5.51 -61.24 -0.34 -8.70 16 9 C 0.56 9.19 7.77 -12.32 -0.10 9.09 16 10 O -0.53 -10.75 16.34 5.32 0.09 -10.66 16 11 C -0.15 -2.60 5.87 -105.00 -0.62 -3.22 16 12 C -0.09 -1.22 9.54 -39.12 -0.37 -1.60 16 13 C -0.14 -2.01 10.02 -39.68 -0.40 -2.40 16 14 C -0.06 -0.99 9.79 -39.25 -0.38 -1.37 16 15 C -0.11 -2.30 5.45 -38.99 -0.21 -2.51 16 16 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 17 C -0.52 -14.75 9.46 30.91 0.29 -14.45 16 18 H 0.08 2.13 7.79 -52.48 -0.41 1.73 16 19 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 20 N -0.87 -25.56 13.22 55.49 0.73 -24.82 16 21 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.34 6.41 -51.93 -0.33 0.01 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.34 6.40 -51.93 -0.33 0.00 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.34 2.24 8.72 -39.29 -0.34 1.90 16 36 H 0.04 0.26 6.30 -51.93 -0.33 -0.06 16 37 H 0.08 0.59 6.30 -51.93 -0.33 0.26 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.40 3.38 6.50 -40.82 -0.27 3.12 16 41 H 0.12 1.08 6.40 -52.48 -0.34 0.75 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -32.86 383.48 -10.01 -42.88 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.86 Total: 2.40 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -1.48 Total: -14.90 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.21 Total: -38.87 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.86 -10.01 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080029698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.823 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds