Wall clock time and date at job start Tue Mar 31 2020 14:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 C 1.53001 * 109.47028 * 239.99921 * 2 1 3 5 5 N 1.46892 * 109.46990 * 119.99964 * 2 1 3 6 6 C 1.46901 * 111.00187 * 60.00047 * 5 2 1 7 7 C 1.53004 * 109.47312 * 180.02562 * 6 5 2 8 8 N 1.46503 * 109.47087 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99774 * 179.97438 * 8 7 6 10 10 O 1.21552 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.47860 * 120.00133 * 179.97438 * 9 8 7 12 12 C 1.39674 * 120.09890 * 359.72892 * 11 9 8 13 13 C 1.38037 * 120.04028 * 179.74115 * 12 11 9 14 14 C 1.38177 * 120.24389 * 0.55880 * 13 12 11 15 15 C 1.39185 * 120.19819 * 359.69585 * 14 13 12 16 16 S 1.76202 * 120.01737 * 180.02562 * 15 14 13 17 17 C 1.76203 * 99.99892 * 265.52509 * 16 15 14 18 18 H 1.08004 * 120.00108 * 5.12862 * 17 16 15 19 19 C 1.38725 * 120.00122 * 185.11676 * 17 16 15 20 20 N 1.31632 * 119.99963 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00075 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46824 * 90.00392 * 21 19 17 23 23 H 1.48501 * 109.47000 * 210.00262 * 21 19 17 24 24 H 1.48496 * 109.46956 * 330.00370 * 21 19 17 25 25 C 1.38875 * 119.95891 * 0.02562 * 15 14 13 26 26 H 1.09004 * 109.47027 * 300.00459 * 1 2 3 27 27 H 1.09005 * 109.46794 * 60.00143 * 1 2 3 28 28 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46811 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46620 * 300.00083 * 3 2 1 31 31 H 1.08995 * 109.46997 * 59.99983 * 3 2 1 32 32 H 1.09004 * 109.47142 * 300.00391 * 4 2 1 33 33 H 1.09003 * 109.46699 * 60.00006 * 4 2 1 34 34 H 1.09003 * 109.46871 * 180.02562 * 4 2 1 35 35 H 1.00905 * 110.99961 * 183.95258 * 5 2 1 36 36 H 1.09003 * 109.47002 * 59.99779 * 6 5 2 37 37 H 1.09002 * 109.47016 * 300.00040 * 6 5 2 38 38 H 1.09001 * 109.46647 * 299.99380 * 7 6 5 39 39 H 1.08991 * 109.47166 * 59.99246 * 7 6 5 40 40 H 0.97000 * 119.99807 * 359.97438 * 8 7 6 41 41 H 1.08011 * 119.98232 * 0.02562 * 12 11 9 42 42 H 1.08006 * 119.88021 * 180.25597 * 13 12 11 43 43 H 1.07994 * 119.90317 * 179.71961 * 14 13 12 44 44 H 0.96998 * 119.99543 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.11653 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.5487 -2.0835 1.2334 7 6 2.0772 -2.7703 2.4943 8 7 1.6079 -4.1577 2.5278 9 6 1.9524 -4.9609 3.5538 10 8 2.6519 -4.5341 4.4515 11 6 1.4783 -6.3611 3.5880 12 6 0.6688 -6.8518 2.5610 13 6 0.2314 -8.1607 2.5914 14 6 0.5817 -8.9874 3.6417 15 6 1.3836 -8.5073 4.6732 16 16 1.8280 -9.5658 6.0099 17 6 0.5632 -9.1489 7.1637 18 1 -0.2295 -8.4742 6.8758 19 6 0.5856 -9.6874 8.4420 20 7 1.5518 -10.5094 8.7931 21 14 -0.7557 -9.2459 9.6651 22 1 -1.8739 -10.2157 9.5448 23 1 -0.2044 -9.2945 11.0431 24 1 -1.2548 -7.8768 9.3796 25 6 1.8331 -7.1935 4.6481 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7217 -1.2490 35 1 3.0263 -0.6501 1.2558 36 1 1.9122 -2.6118 0.3519 37 1 0.4588 -2.0979 1.2419 38 1 3.1671 -2.7559 2.4861 39 1 1.7135 -2.2419 3.3754 40 1 1.0494 -4.4982 1.8116 41 1 0.3888 -6.2081 1.7401 42 1 -0.3910 -8.5387 1.7938 43 1 0.2327 -10.0091 3.6622 44 1 1.5676 -10.8856 9.6870 45 1 2.4557 -6.8185 5.4468 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080029698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:30 Heat of formation + Delta-G solvation = -45.708443 kcal Electronic energy + Delta-G solvation = -23591.999369 eV Core-core repulsion = 20119.968491 eV Total energy + Delta-G solvation = -3472.030878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25116 -39.52710 -39.04834 -36.29026 -34.65864 -33.36730 -32.06349 -31.82791 -28.69581 -28.17328 -28.10377 -27.74682 -24.89899 -23.75886 -22.97517 -21.71862 -20.18014 -19.97847 -19.01818 -17.45966 -17.12956 -16.94010 -16.88052 -16.64837 -16.15348 -16.05272 -15.57220 -15.30255 -15.14668 -14.99353 -14.66452 -14.56478 -14.19273 -13.86479 -13.51671 -13.26614 -13.09639 -12.96997 -12.96023 -12.83755 -12.67478 -12.65395 -12.47725 -12.39223 -12.17020 -11.90133 -11.75813 -11.56916 -11.27106 -11.15565 -10.75681 -10.30708 -9.90515 -9.70332 -9.37495 -8.81092 -8.39891 -6.19952 -0.18876 0.25225 1.28888 1.36915 1.45453 1.64125 1.78072 1.97373 2.23871 2.79936 2.92938 3.23619 3.41138 3.66563 3.84250 3.93221 3.95369 4.01442 4.04041 4.15177 4.27433 4.35898 4.47487 4.48737 4.65557 4.69978 4.72994 4.82621 4.87564 4.92170 4.93865 5.00353 5.03296 5.04897 5.21694 5.22224 5.30720 5.33058 5.37855 5.38157 5.45228 5.50619 5.86295 6.08876 6.15073 6.42378 6.44544 7.00364 7.11625 8.67128 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.002162 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.552430 B =12945.071605 C =13452.462440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.104 3.896 3 C -0.138 4.138 4 C -0.180 4.180 5 N -0.686 5.686 6 C 0.055 3.945 7 C 0.123 3.877 8 N -0.705 5.705 9 C 0.562 3.438 10 O -0.583 6.583 11 C -0.157 4.157 12 C -0.062 4.062 13 C -0.120 4.120 14 C -0.062 4.062 15 C -0.130 4.130 16 S -0.096 6.096 17 C -0.536 4.536 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.906 5.906 21 Si 0.993 3.007 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.046 4.046 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.345 0.655 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.417 0.583 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.135 0.865 44 H 0.274 0.726 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 19.225 -24.951 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 C -0.196 4.196 4 C -0.239 4.239 5 N -0.319 5.319 6 C -0.074 4.074 7 C -0.001 4.001 8 N -0.358 5.358 9 C 0.350 3.650 10 O -0.464 6.464 11 C -0.162 4.162 12 C -0.080 4.080 13 C -0.140 4.140 14 C -0.083 4.083 15 C -0.242 4.242 16 S 0.139 5.861 17 C -0.683 4.683 18 H 0.085 0.915 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.814 3.186 22 H -0.186 1.186 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.164 0.836 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.256 0.744 41 H 0.193 0.807 42 H 0.195 0.805 43 H 0.153 0.847 44 H 0.083 0.917 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.417 18.902 -23.650 30.468 hybrid contribution -0.745 0.266 0.372 0.874 sum -4.162 19.169 -23.278 30.441 Atomic orbital electron populations 1.21911 0.93586 1.02215 1.02180 1.21010 0.95763 0.94355 0.87539 1.21814 1.01057 0.94357 1.02350 1.22536 1.01253 1.01232 0.98831 1.60516 1.16840 1.13818 1.40683 1.22066 1.01570 0.88818 0.94944 1.21244 0.99098 0.80231 0.99492 1.45531 1.53652 1.12076 1.24577 1.18393 0.79277 0.85706 0.81640 1.90766 1.39947 1.76674 1.38997 1.19941 1.04484 0.93412 0.98362 1.21727 0.93435 0.96367 0.96492 1.21567 1.00582 0.93225 0.98580 1.22087 0.92929 1.00876 0.92435 1.22511 1.03024 0.97527 1.01090 1.83477 1.42758 1.50673 1.09175 1.23062 1.11343 1.34017 0.99894 0.91477 1.26026 0.99163 0.94337 0.99174 1.70113 1.33000 1.30068 1.21003 0.85038 0.77761 0.78908 0.76856 1.18569 1.19706 1.19411 1.21629 0.96106 0.92522 0.96541 0.92805 0.91274 0.92298 0.92526 0.91101 0.92593 0.92120 0.91283 0.92658 0.83582 0.92569 0.89299 0.92315 0.92419 0.74434 0.80701 0.80546 0.84674 0.91697 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.24 71.98 0.59 -0.75 16 2 C 0.10 1.00 0.97 3.53 0.00 1.00 16 3 C -0.14 -1.26 8.73 71.98 0.63 -0.63 16 4 C -0.18 -1.41 8.23 71.98 0.59 -0.82 16 5 N -0.69 -8.33 6.09 -470.16 -2.86 -11.19 16 6 C 0.06 0.64 5.01 86.30 0.43 1.07 16 7 C 0.12 2.30 5.93 86.38 0.51 2.81 16 8 N -0.70 -14.13 5.51 -465.96 -2.57 -16.69 16 9 C 0.56 17.87 7.77 86.79 0.67 18.54 16 10 O -0.58 -24.46 16.34 -3.88 -0.06 -24.52 16 11 C -0.16 -5.11 5.87 -20.11 -0.12 -5.23 16 12 C -0.06 -1.37 9.54 22.57 0.22 -1.16 16 13 C -0.12 -2.83 10.02 22.21 0.22 -2.61 16 14 C -0.06 -2.15 9.79 22.48 0.22 -1.93 16 15 C -0.13 -5.80 5.45 22.65 0.12 -5.68 16 16 S -0.10 -5.28 21.41 -56.49 -1.21 -6.49 16 17 C -0.54 -31.84 9.46 67.94 0.64 -31.20 16 18 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 19 C 0.02 1.06 5.49 84.84 0.47 1.52 16 20 N -0.91 -55.14 13.22 21.64 0.29 -54.86 16 21 Si 0.99 45.17 29.55 68.60 2.03 47.20 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.05 -1.98 9.34 22.70 0.21 -1.77 16 26 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.06 0.52 6.41 -2.39 -0.02 0.51 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.46 6.40 -2.39 -0.02 0.45 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.35 3.97 8.72 -89.69 -0.78 3.19 16 36 H 0.06 0.50 6.30 -2.39 -0.02 0.49 16 37 H 0.09 0.95 6.30 -2.39 -0.02 0.93 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.42 4.95 6.50 -92.71 -0.60 4.35 16 41 H 0.18 1.86 6.40 -2.90 -0.02 1.85 16 42 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.10 4.99 7.65 -2.91 -0.02 4.97 16 Total: -1.00 -78.80 383.48 0.65 -78.14 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -0.38 Total: 15.24 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 5.42 Total: -26.83 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -5.14 Total: -82.74 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.52 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -1.21 Total: -6.49 kcal Total: -78.80 0.65 -78.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080029698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.434 kcal (2) G-P(sol) polarization free energy of solvation -78.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds