Wall clock time and date at job start Tue Mar 31 2020 13:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46756 * 2 1 4 4 C 1.52997 * 109.47364 * 240.00414 * 2 1 3 5 5 C 1.53004 * 109.47114 * 119.99666 * 2 1 3 6 6 N 1.46501 * 109.46780 * 64.95793 * 5 2 1 7 7 C 1.46501 * 119.99547 * 273.86502 * 6 5 2 8 8 C 1.50707 * 109.47063 * 262.38963 * 7 6 5 9 9 H 1.07997 * 119.99640 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99742 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99186 * 179.97438 * 10 8 7 12 12 Si 1.86788 * 120.00276 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47756 * 89.99961 * 12 10 8 14 14 H 1.48500 * 109.47273 * 210.00195 * 12 10 8 15 15 H 1.48504 * 109.47341 * 329.99604 * 12 10 8 16 16 C 1.34773 * 120.00059 * 93.86414 * 6 5 2 17 17 O 1.21683 * 120.00192 * 2.51655 * 16 6 5 18 18 C 1.46684 * 119.99865 * 182.51623 * 16 6 5 19 19 S 1.76220 * 126.12854 * 351.70365 * 18 16 6 20 20 C 1.70957 * 90.31253 * 179.97438 * 19 18 16 21 21 N 1.29424 * 110.39219 * 359.97438 * 20 19 18 22 22 C 1.30943 * 117.36326 * 359.97438 * 21 20 19 23 23 C 1.50704 * 122.90296 * 179.97438 * 22 21 20 24 24 C 1.52993 * 117.50001 * 8.62852 * 23 22 21 25 25 C 1.52995 * 117.50109 * 300.00294 * 23 22 21 26 26 H 1.09004 * 109.47660 * 299.99909 * 1 2 3 27 27 H 1.08999 * 109.47569 * 60.00259 * 1 2 3 28 28 H 1.09007 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47327 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47381 * 300.00154 * 3 2 1 31 31 H 1.09004 * 109.47431 * 60.00491 * 3 2 1 32 32 H 1.09006 * 109.46475 * 305.04903 * 4 2 1 33 33 H 1.08993 * 109.47582 * 65.04770 * 4 2 1 34 34 H 1.09000 * 109.47254 * 185.05404 * 4 2 1 35 35 H 1.08998 * 109.47158 * 304.95829 * 5 2 1 36 36 H 1.08997 * 109.46640 * 184.95316 * 5 2 1 37 37 H 1.09006 * 109.47396 * 22.39065 * 7 6 5 38 38 H 1.09001 * 109.46866 * 142.39056 * 7 6 5 39 39 H 0.96999 * 119.99306 * 179.97438 * 11 10 8 40 40 H 1.07995 * 124.80473 * 179.97438 * 20 19 18 41 41 H 1.09001 * 115.54460 * 154.33465 * 23 22 21 42 42 H 1.08994 * 117.50139 * 359.97438 * 24 23 22 43 43 H 1.09004 * 117.49868 * 145.01879 * 24 23 22 44 44 H 1.09000 * 117.50063 * 214.98177 * 25 23 22 45 45 H 1.09000 * 117.50294 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7212 1.2493 6 7 1.6515 -2.1326 1.1911 7 6 0.3377 -2.5516 1.6858 8 6 0.4744 -3.0770 3.0916 9 1 1.4431 -3.0972 3.5687 10 6 -0.6370 -3.5329 3.7683 11 7 -0.5175 -3.9919 4.9950 12 14 -2.3120 -3.5000 2.9423 13 1 -2.5337 -4.7790 2.2210 14 1 -3.3680 -3.3226 3.9713 15 1 -2.3664 -2.3720 1.9779 16 6 2.5027 -3.0454 0.6826 17 8 3.6112 -2.7047 0.3140 18 6 2.0928 -4.4496 0.5734 19 16 0.6219 -5.1572 1.2374 20 6 1.0640 -6.6858 0.6125 21 7 2.1947 -6.6077 -0.0124 22 6 2.7771 -5.4358 -0.0586 23 6 4.0949 -5.2033 -0.7518 24 6 4.6625 -6.3484 -1.5927 25 6 5.3057 -5.9931 -0.2508 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4427 0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6047 -1.7194 -1.2956 33 1 1.7525 -0.1578 -2.1369 34 1 3.1263 -0.8002 -1.2051 35 1 1.6060 -0.2612 2.1370 36 1 3.1263 -0.6449 1.2947 37 1 -0.3413 -1.6988 1.6810 38 1 -0.0597 -3.3361 1.0417 39 1 -1.2995 -4.3123 5.4711 40 1 0.4822 -7.5888 0.7234 41 1 4.2679 -4.1863 -1.1037 42 1 4.0831 -7.2701 -1.6444 43 1 5.2091 -6.0850 -2.4983 44 1 6.2754 -5.4958 -0.2734 45 1 5.1493 -6.6806 0.5805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089807427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:49 Heat of formation + Delta-G solvation = 33.696128 kcal Electronic energy + Delta-G solvation = -26659.253485 eV Core-core repulsion = 23190.665847 eV Total energy + Delta-G solvation = -3468.587638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.97923 -39.06235 -36.71245 -36.00024 -34.67416 -32.61028 -30.12487 -28.61764 -27.08045 -27.00294 -26.44816 -24.68941 -22.84453 -22.32842 -21.99441 -20.46766 -18.59230 -17.86996 -17.49464 -17.38812 -16.06062 -15.69478 -15.21947 -15.03527 -14.45927 -14.30991 -14.14334 -13.90323 -13.73322 -13.24604 -13.14184 -13.03366 -12.72678 -12.32029 -12.20464 -11.98897 -11.69131 -11.44682 -11.31988 -11.21578 -11.20297 -11.01951 -10.84255 -10.61860 -10.52599 -10.36879 -10.33348 -10.31413 -9.93920 -9.84547 -9.22040 -9.14924 -8.69558 -8.59410 -8.12127 -7.72591 -6.45829 -4.42742 0.96693 2.06643 2.50020 2.98872 3.05022 3.07987 3.12449 3.70752 3.77152 4.03913 4.39738 4.70974 4.84744 5.03082 5.04344 5.11129 5.17933 5.31162 5.37199 5.45182 5.72568 5.73534 5.76372 5.81137 5.93918 5.97149 6.02106 6.08499 6.10133 6.11200 6.13800 6.17800 6.22148 6.31436 6.38956 6.42787 6.48201 6.57900 6.60193 6.65842 6.75664 7.12510 7.18599 7.92587 8.15640 8.32593 8.60700 8.81014 9.09318 10.65181 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.007574 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.026866 B = 3695.864438 C = 5853.197860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.133 4.133 5 C 0.131 3.869 6 N -0.585 5.585 7 C 0.195 3.805 8 C -0.535 4.535 9 H 0.086 0.914 10 C 0.089 3.911 11 N -0.871 5.871 12 Si 0.845 3.155 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.257 1.257 16 C 0.602 3.398 17 O -0.549 6.549 18 C -0.302 4.302 19 S 0.325 5.675 20 C -0.079 4.079 21 N -0.489 5.489 22 C 0.148 3.852 23 C -0.078 4.078 24 C -0.170 4.170 25 C -0.161 4.161 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.271 0.729 40 H 0.183 0.817 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.192 2.787 -9.764 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.191 4.191 5 C 0.008 3.992 6 N -0.315 5.315 7 C 0.071 3.929 8 C -0.576 4.576 9 H 0.104 0.896 10 C -0.118 4.118 11 N -0.506 5.506 12 Si 0.669 3.331 13 H -0.187 1.187 14 H -0.200 1.200 15 H -0.182 1.182 16 C 0.390 3.610 17 O -0.431 6.431 18 C -0.427 4.427 19 S 0.590 5.410 20 C -0.369 4.369 21 N -0.204 5.204 22 C 0.006 3.994 23 C -0.098 4.098 24 C -0.208 4.208 25 C -0.199 4.199 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.200 0.800 41 H 0.151 0.849 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.869 2.631 -9.411 9.810 hybrid contribution -0.449 -0.160 -0.367 0.602 sum 0.420 2.471 -9.778 10.094 Atomic orbital electron populations 1.22037 0.94765 1.02349 1.01162 1.20968 0.95896 0.95368 0.96431 1.21779 1.00997 0.95070 1.01487 1.21813 1.01776 0.99695 0.95783 1.21442 1.00896 0.80151 0.96700 1.47613 1.17343 1.06744 1.59757 1.20214 0.81464 0.95999 0.95206 1.21429 0.97488 1.42085 0.96645 0.89566 1.24813 0.98417 0.94012 0.94517 1.69865 1.30823 1.39342 1.10571 0.87262 0.84939 0.80242 0.80622 1.18694 1.20001 1.18162 1.16639 0.84106 0.83040 0.77168 1.90671 1.20444 1.80438 1.51498 1.25446 1.03876 0.99817 1.13558 1.85980 1.16588 0.96196 1.42224 1.29339 0.98248 1.08517 1.00798 1.65997 1.09479 1.25396 1.19544 1.19439 0.96274 0.86438 0.97240 1.20666 0.88725 0.97994 1.02443 1.22931 1.03587 1.00075 0.94194 1.22842 0.96147 1.02962 0.97935 0.92542 0.93265 0.91960 0.92585 0.92817 0.92633 0.93128 0.93688 0.91812 0.90310 0.90019 0.92523 0.95676 0.91832 0.79976 0.84854 0.88066 0.89148 0.88758 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 7.36 37.16 0.27 -1.77 16 2 C -0.09 -1.22 0.85 -154.51 -0.13 -1.35 16 3 C -0.14 -1.59 8.47 37.16 0.31 -1.27 16 4 C -0.13 -1.99 7.24 37.16 0.27 -1.72 16 5 C 0.13 2.22 4.59 -4.04 -0.02 2.20 16 6 N -0.59 -11.48 1.98 -176.60 -0.35 -11.83 16 7 C 0.19 4.01 2.64 -5.19 -0.01 4.00 16 8 C -0.53 -12.90 7.59 -34.44 -0.26 -13.17 16 9 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 10 C 0.09 2.19 5.12 -17.82 -0.09 2.10 16 11 N -0.87 -23.22 13.96 55.43 0.77 -22.45 16 12 Si 0.84 17.74 26.82 -169.99 -4.56 13.19 16 13 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 15 H -0.26 -5.09 6.54 56.52 0.37 -4.72 16 16 C 0.60 12.53 6.02 -12.85 -0.08 12.45 16 17 O -0.55 -11.73 12.65 5.20 0.07 -11.66 16 18 C -0.30 -6.24 6.24 -37.10 -0.23 -6.47 16 19 S 0.33 6.40 15.59 -107.50 -1.68 4.72 16 20 C -0.08 -1.40 12.22 51.75 0.63 -0.77 16 21 N -0.49 -9.38 9.80 -11.53 -0.11 -9.49 16 22 C 0.15 2.92 6.42 -83.89 -0.54 2.38 16 23 C -0.08 -1.37 5.36 -91.78 -0.49 -1.87 16 24 C -0.17 -2.50 10.08 -26.74 -0.27 -2.77 16 25 C -0.16 -2.50 10.23 -26.73 -0.27 -2.77 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.97 5.73 -51.93 -0.30 0.68 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.85 6.85 -51.93 -0.36 0.49 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.01 7.41 -51.93 -0.38 0.63 16 35 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.08 1.42 7.28 -51.93 -0.38 1.04 16 37 H 0.06 1.13 4.96 -51.93 -0.26 0.87 16 38 H 0.03 0.54 3.92 -22.79 -0.09 0.45 16 39 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.18 2.61 8.06 -52.49 -0.42 2.18 16 41 H 0.13 2.44 6.37 -51.93 -0.33 2.11 16 42 H 0.10 1.55 7.74 -51.93 -0.40 1.14 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -27.02 358.07 -8.10 -35.12 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.73 Total: 7.79 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.91 Total: -10.79 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.31 Total: -43.77 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -4.56 Total: 13.19 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.68 Total: 4.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.02 -8.10 -35.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089807427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.820 kcal (2) G-P(sol) polarization free energy of solvation -27.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds