Wall clock time and date at job start Tue Mar 31 2020 13:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46756 * 2 1 4 4 C 1.52997 * 109.47364 * 240.00414 * 2 1 3 5 5 C 1.53004 * 109.47114 * 119.99666 * 2 1 3 6 6 N 1.46501 * 109.46780 * 64.95793 * 5 2 1 7 7 C 1.46501 * 119.99547 * 273.86502 * 6 5 2 8 8 C 1.50707 * 109.47063 * 262.38963 * 7 6 5 9 9 H 1.07997 * 119.99640 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99742 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99186 * 179.97438 * 10 8 7 12 12 Si 1.86788 * 120.00276 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47756 * 89.99961 * 12 10 8 14 14 H 1.48500 * 109.47273 * 210.00195 * 12 10 8 15 15 H 1.48504 * 109.47341 * 329.99604 * 12 10 8 16 16 C 1.34773 * 120.00059 * 93.86414 * 6 5 2 17 17 O 1.21683 * 120.00192 * 2.51655 * 16 6 5 18 18 C 1.46684 * 119.99865 * 182.51623 * 16 6 5 19 19 S 1.76220 * 126.12854 * 351.70365 * 18 16 6 20 20 C 1.70957 * 90.31253 * 179.97438 * 19 18 16 21 21 N 1.29424 * 110.39219 * 359.97438 * 20 19 18 22 22 C 1.30943 * 117.36326 * 359.97438 * 21 20 19 23 23 C 1.50704 * 122.90296 * 179.97438 * 22 21 20 24 24 C 1.52993 * 117.50001 * 8.62852 * 23 22 21 25 25 C 1.52995 * 117.50109 * 300.00294 * 23 22 21 26 26 H 1.09004 * 109.47660 * 299.99909 * 1 2 3 27 27 H 1.08999 * 109.47569 * 60.00259 * 1 2 3 28 28 H 1.09007 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47327 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47381 * 300.00154 * 3 2 1 31 31 H 1.09004 * 109.47431 * 60.00491 * 3 2 1 32 32 H 1.09006 * 109.46475 * 305.04903 * 4 2 1 33 33 H 1.08993 * 109.47582 * 65.04770 * 4 2 1 34 34 H 1.09000 * 109.47254 * 185.05404 * 4 2 1 35 35 H 1.08998 * 109.47158 * 304.95829 * 5 2 1 36 36 H 1.08997 * 109.46640 * 184.95316 * 5 2 1 37 37 H 1.09006 * 109.47396 * 22.39065 * 7 6 5 38 38 H 1.09001 * 109.46866 * 142.39056 * 7 6 5 39 39 H 0.96999 * 119.99306 * 179.97438 * 11 10 8 40 40 H 1.07995 * 124.80473 * 179.97438 * 20 19 18 41 41 H 1.09001 * 115.54460 * 154.33465 * 23 22 21 42 42 H 1.08994 * 117.50139 * 359.97438 * 24 23 22 43 43 H 1.09004 * 117.49868 * 145.01879 * 24 23 22 44 44 H 1.09000 * 117.50063 * 214.98177 * 25 23 22 45 45 H 1.09000 * 117.50294 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7212 1.2493 6 7 1.6515 -2.1326 1.1911 7 6 0.3377 -2.5516 1.6858 8 6 0.4744 -3.0770 3.0916 9 1 1.4431 -3.0972 3.5687 10 6 -0.6370 -3.5329 3.7683 11 7 -0.5175 -3.9919 4.9950 12 14 -2.3120 -3.5000 2.9423 13 1 -2.5337 -4.7790 2.2210 14 1 -3.3680 -3.3226 3.9713 15 1 -2.3664 -2.3720 1.9779 16 6 2.5027 -3.0454 0.6826 17 8 3.6112 -2.7047 0.3140 18 6 2.0928 -4.4496 0.5734 19 16 0.6219 -5.1572 1.2374 20 6 1.0640 -6.6858 0.6125 21 7 2.1947 -6.6077 -0.0124 22 6 2.7771 -5.4358 -0.0586 23 6 4.0949 -5.2033 -0.7518 24 6 4.6625 -6.3484 -1.5927 25 6 5.3057 -5.9931 -0.2508 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4427 0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6047 -1.7194 -1.2956 33 1 1.7525 -0.1578 -2.1369 34 1 3.1263 -0.8002 -1.2051 35 1 1.6060 -0.2612 2.1370 36 1 3.1263 -0.6449 1.2947 37 1 -0.3413 -1.6988 1.6810 38 1 -0.0597 -3.3361 1.0417 39 1 -1.2995 -4.3123 5.4711 40 1 0.4822 -7.5888 0.7234 41 1 4.2679 -4.1863 -1.1037 42 1 4.0831 -7.2701 -1.6444 43 1 5.2091 -6.0850 -2.4983 44 1 6.2754 -5.4958 -0.2734 45 1 5.1493 -6.6806 0.5805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089807427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:48 Heat of formation + Delta-G solvation = 19.635278 kcal Electronic energy + Delta-G solvation = -26659.863209 eV Core-core repulsion = 23190.665847 eV Total energy + Delta-G solvation = -3469.197362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49555 -40.53364 -38.09052 -37.32046 -36.25452 -34.40632 -31.62693 -30.31352 -28.25200 -28.13152 -27.83956 -26.17221 -24.56931 -23.73712 -23.20837 -21.97697 -19.85251 -19.39001 -19.23684 -18.99725 -17.59074 -17.22264 -16.73596 -16.39902 -16.08248 -15.71183 -15.45551 -15.20021 -15.09059 -14.78731 -14.58257 -14.48070 -14.32472 -13.87337 -13.50100 -13.12254 -13.04781 -12.84829 -12.65579 -12.55182 -12.46261 -12.36908 -12.29632 -12.05829 -11.87400 -11.77646 -11.64667 -11.60359 -11.55197 -11.27621 -10.94341 -10.76709 -10.25405 -10.19737 -9.66560 -9.27330 -8.35024 -6.37409 -0.55581 0.51394 0.97263 1.35006 1.39960 1.46011 1.53450 2.16916 2.23334 2.28400 2.99212 3.07952 3.30045 3.64731 3.82405 3.87086 3.97467 4.03048 4.04667 4.19904 4.36858 4.46699 4.54283 4.58176 4.63716 4.66230 4.75870 4.79832 4.84036 4.90387 4.92320 4.93221 5.04871 5.06619 5.17565 5.19561 5.27820 5.30441 5.31488 5.36001 5.45977 5.50976 5.67115 6.11698 6.46440 6.61664 6.78683 7.15222 7.25277 8.80199 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.007574 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.026866 B = 3695.864438 C = 5853.197860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.130 4.130 4 C -0.125 4.125 5 C 0.126 3.874 6 N -0.586 5.586 7 C 0.204 3.796 8 C -0.533 4.533 9 H 0.034 0.966 10 C 0.050 3.950 11 N -0.922 5.922 12 Si 0.891 3.109 13 H -0.242 1.242 14 H -0.278 1.278 15 H -0.235 1.235 16 C 0.596 3.404 17 O -0.563 6.563 18 C -0.329 4.329 19 S 0.292 5.708 20 C -0.052 4.052 21 N -0.498 5.498 22 C 0.148 3.852 23 C -0.108 4.108 24 C -0.143 4.143 25 C -0.156 4.156 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.272 0.728 40 H 0.223 0.777 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 2.865 -12.129 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.188 4.188 4 C -0.183 4.183 5 C 0.003 3.997 6 N -0.315 5.315 7 C 0.080 3.920 8 C -0.574 4.574 9 H 0.052 0.948 10 C -0.153 4.153 11 N -0.560 5.560 12 Si 0.712 3.288 13 H -0.166 1.166 14 H -0.203 1.203 15 H -0.158 1.158 16 C 0.385 3.615 17 O -0.445 6.445 18 C -0.454 4.454 19 S 0.556 5.444 20 C -0.343 4.343 21 N -0.212 5.212 22 C 0.007 3.993 23 C -0.129 4.129 24 C -0.180 4.180 25 C -0.194 4.194 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.239 0.761 41 H 0.141 0.859 42 H 0.116 0.884 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.043 2.751 -11.787 12.103 hybrid contribution -0.041 -0.283 0.342 0.446 sum 0.002 2.468 -11.445 11.708 Atomic orbital electron populations 1.22016 0.94135 1.01520 1.02521 1.20935 0.96343 0.96480 0.94367 1.21739 1.00990 0.93175 1.02859 1.21729 1.00547 0.98880 0.97131 1.21639 1.00398 0.79177 0.98452 1.47665 1.16901 1.07684 1.59236 1.20070 0.82200 0.96494 0.93226 1.21322 0.95305 1.42552 0.98194 0.94758 1.25454 1.01942 0.93233 0.94665 1.70004 1.31994 1.41452 1.12554 0.86499 0.80036 0.82016 0.80246 1.16610 1.20311 1.15769 1.16782 0.84119 0.83426 0.77194 1.90644 1.20854 1.80747 1.52303 1.25547 1.04744 1.00174 1.14922 1.85862 1.17053 0.97863 1.43657 1.29879 0.97469 1.08575 0.98425 1.66094 1.09936 1.24944 1.20272 1.19865 0.96799 0.86357 0.96272 1.20697 0.88737 0.98632 1.04815 1.23000 1.02127 0.98188 0.94704 1.22913 0.96022 1.02151 0.98347 0.92088 0.91014 0.93814 0.92656 0.90905 0.91785 0.95419 0.91370 0.93356 0.90417 0.91105 0.91274 0.94693 0.91809 0.76083 0.85944 0.88384 0.86303 0.86898 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 7.36 71.98 0.53 -3.23 16 2 C -0.08 -2.19 0.85 -52.18 -0.04 -2.24 16 3 C -0.13 -2.76 8.47 71.98 0.61 -2.15 16 4 C -0.13 -3.64 7.24 71.98 0.52 -3.12 16 5 C 0.13 4.31 4.59 86.38 0.40 4.71 16 6 N -0.59 -23.54 1.98 -830.85 -1.65 -25.18 16 7 C 0.20 8.47 2.64 85.64 0.23 8.69 16 8 C -0.53 -26.61 7.59 25.60 0.19 -26.41 16 9 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 10 C 0.05 2.48 5.12 84.65 0.43 2.91 16 11 N -0.92 -50.88 13.96 21.45 0.30 -50.58 16 12 Si 0.89 35.67 26.82 68.60 1.84 37.51 16 13 H -0.24 -8.90 7.11 99.48 0.71 -8.20 16 14 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 15 H -0.23 -8.48 6.54 99.48 0.65 -7.83 16 16 C 0.60 25.55 6.02 86.45 0.52 26.07 16 17 O -0.56 -24.82 12.65 -4.30 -0.05 -24.88 16 18 C -0.33 -13.81 6.24 23.88 0.15 -13.67 16 19 S 0.29 11.42 15.59 -56.49 -0.88 10.54 16 20 C -0.05 -1.77 12.22 130.60 1.60 -0.18 16 21 N -0.50 -18.41 9.80 -190.40 -1.87 -20.28 16 22 C 0.15 5.83 6.42 42.09 0.27 6.10 16 23 C -0.11 -3.76 5.36 -11.54 -0.06 -3.82 16 24 C -0.14 -3.89 10.08 30.59 0.31 -3.58 16 25 C -0.16 -4.66 10.23 30.59 0.31 -4.35 16 26 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.29 5.73 -2.38 -0.01 1.28 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.03 0.91 6.85 -2.38 -0.02 0.89 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.53 7.41 -2.39 -0.02 1.51 16 35 H 0.08 2.63 8.10 -2.39 -0.02 2.62 16 36 H 0.07 2.55 7.28 -2.39 -0.02 2.54 16 37 H 0.07 2.71 4.96 -2.38 -0.01 2.70 16 38 H 0.04 1.46 3.92 -20.91 -0.08 1.38 16 39 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.22 5.58 8.06 -2.91 -0.02 5.56 16 41 H 0.12 4.52 6.37 -2.39 -0.02 4.51 16 42 H 0.10 2.76 7.74 -2.39 -0.02 2.74 16 43 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -60.92 358.07 4.51 -56.40 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.86 Total: 30.72 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 5.96 Total: -14.25 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -3.21 Total: -96.04 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 1.84 Total: 37.51 kcal Atomic # 16 Polarization: 11.42 SS G_CDS: -0.88 Total: 10.54 kcal Total: -60.92 4.51 -56.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089807427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.037 kcal (2) G-P(sol) polarization free energy of solvation -60.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds