Wall clock time and date at job start Tue Mar 31 2020 13:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76207 * 102.99999 * 2 1 4 4 C 1.39176 * 119.64910 * 179.97438 * 3 2 1 5 5 C 1.39476 * 118.92553 * 180.27129 * 4 3 2 6 6 C 1.48160 * 120.87717 * 179.74746 * 5 4 3 7 7 O 1.21511 * 120.00089 * 330.34594 * 6 5 4 8 8 N 1.34771 * 120.00036 * 150.35522 * 6 5 4 9 9 C 1.46497 * 119.99959 * 6.01170 * 8 6 5 10 10 C 1.50698 * 109.47466 * 97.84772 * 9 8 6 11 11 H 1.08001 * 119.99485 * 359.97438 * 10 9 8 12 12 C 1.37868 * 120.00320 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00057 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00112 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47307 * 89.99999 * 14 12 10 16 16 H 1.48508 * 109.47162 * 210.00465 * 14 12 10 17 17 H 1.48497 * 109.47034 * 329.99775 * 14 12 10 18 18 C 1.46496 * 120.00059 * 186.01483 * 8 6 5 19 19 C 1.52996 * 109.47244 * 85.14065 * 18 8 6 20 20 C 1.53009 * 109.47223 * 184.46859 * 19 18 8 21 21 C 1.52997 * 109.47268 * 65.93445 * 20 19 18 22 22 C 1.52996 * 109.46900 * 185.93568 * 20 19 18 23 23 C 1.40051 * 118.24123 * 359.51353 * 5 4 3 24 24 C 1.37942 * 119.18349 * 0.48868 * 23 5 4 25 25 N 1.31910 * 121.01257 * 359.74519 * 24 23 5 26 26 H 1.09005 * 109.46733 * 60.00027 * 1 2 3 27 27 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46923 * 300.00687 * 1 2 3 29 29 H 1.07999 * 120.53886 * 359.97438 * 4 3 2 30 30 H 1.09007 * 109.47194 * 217.84558 * 9 8 6 31 31 H 1.09000 * 109.47162 * 337.84464 * 9 8 6 32 32 H 0.97005 * 119.99810 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.47329 * 205.14019 * 18 8 6 34 34 H 1.09001 * 109.47312 * 325.13645 * 18 8 6 35 35 H 1.09005 * 109.47106 * 304.46237 * 19 18 8 36 36 H 1.08998 * 109.47631 * 64.46432 * 19 18 8 37 37 H 1.09003 * 109.46496 * 305.93324 * 20 19 18 38 38 H 1.08998 * 109.47084 * 184.46966 * 21 20 19 39 39 H 1.09006 * 109.47251 * 304.46927 * 21 20 19 40 40 H 1.09002 * 109.47282 * 64.46854 * 21 20 19 41 41 H 1.08998 * 109.47717 * 59.99811 * 22 20 19 42 42 H 1.09003 * 109.46940 * 179.97438 * 22 20 19 43 43 H 1.08995 * 109.47519 * 299.99568 * 22 20 19 44 44 H 1.07996 * 120.40242 * 180.26328 * 23 5 4 45 45 H 1.08004 * 119.49719 * 179.77521 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5438 2.1157 0.0005 5 6 3.8404 3.4785 0.0063 6 6 5.2446 3.9511 0.0127 7 8 6.1104 3.2763 0.5339 8 7 5.5617 5.1294 -0.5594 9 6 4.5032 6.0040 -1.0702 10 6 4.1902 7.0647 -0.0466 11 1 4.7258 7.0850 0.8910 12 6 3.2193 8.0084 -0.3064 13 7 2.9458 8.9338 0.5872 14 14 2.2923 7.9728 -1.9278 15 1 1.0803 7.1265 -1.7866 16 1 1.8914 9.3536 -2.2993 17 1 3.1684 7.4101 -2.9866 18 6 6.9648 5.5357 -0.6705 19 6 7.5730 4.9282 -1.9361 20 6 9.0655 5.2598 -1.9946 21 6 9.7896 4.5571 -0.8445 22 6 9.6423 4.7814 -3.3285 23 6 2.7758 4.3884 0.0009 24 6 1.4820 3.9099 0.0003 25 7 1.2367 2.6138 -0.0002 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.3361 1.3817 0.0014 30 1 4.8371 6.4775 -1.9936 31 1 3.6081 5.4140 -1.2676 32 1 2.2629 9.5980 0.4042 33 1 7.0251 6.6228 -0.7241 34 1 7.5151 5.1839 0.2021 35 1 7.4416 3.8462 -1.9191 36 1 7.0744 5.3410 -2.8131 37 1 9.2020 6.3376 -1.9054 38 1 10.8378 4.8559 -0.8384 39 1 9.3264 4.8373 0.1017 40 1 9.7203 3.4774 -0.9772 41 1 9.1265 5.2820 -4.1479 42 1 10.7055 5.0181 -3.3703 43 1 9.5059 3.7037 -3.4178 44 1 2.9655 5.4516 0.0008 45 1 0.6571 4.6071 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103439996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:39 Heat of formation + Delta-G solvation = 4.894091 kcal Electronic energy + Delta-G solvation = -25383.458464 eV Core-core repulsion = 21913.621876 eV Total energy + Delta-G solvation = -3469.836588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.38092 -38.71685 -36.62521 -35.29988 -32.83190 -32.44557 -31.10796 -29.45141 -28.82189 -27.89137 -27.06692 -24.71895 -23.55056 -22.81397 -22.37344 -19.90372 -19.46518 -17.54677 -17.22089 -16.60801 -15.94479 -15.77863 -15.24711 -15.09752 -14.68730 -14.59466 -14.18866 -14.05146 -13.83939 -13.50643 -13.43232 -13.24834 -13.09271 -12.80731 -12.71802 -12.38796 -12.14834 -11.97301 -11.71079 -11.28151 -11.11134 -11.08476 -10.87511 -10.69857 -10.50840 -10.44624 -10.36082 -10.22407 -9.89279 -9.79728 -9.58616 -9.50028 -9.03438 -8.88875 -7.92417 -7.43921 -6.43610 -4.47849 1.08940 1.26811 1.53023 2.30041 3.02397 3.12750 3.14894 3.25199 3.57490 4.03979 4.06865 4.73507 4.84142 4.88448 5.01484 5.04421 5.08699 5.10716 5.17826 5.28015 5.34952 5.52103 5.67018 5.74380 5.75259 5.76584 5.82028 5.90526 5.91762 5.93415 6.02902 6.10830 6.17253 6.25732 6.29019 6.31644 6.51406 6.53225 6.57589 6.61326 6.89522 7.11700 7.23883 7.88963 7.92684 8.20360 8.61225 8.69600 9.12417 10.67411 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.005090 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.743581 B = 5499.819696 C = 8021.325822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.092 6.092 3 C 0.098 3.902 4 C -0.097 4.097 5 C -0.069 4.069 6 C 0.559 3.441 7 O -0.553 6.553 8 N -0.577 5.577 9 C 0.179 3.821 10 C -0.549 4.549 11 H 0.084 0.916 12 C 0.083 3.917 13 N -0.875 5.875 14 Si 0.859 3.141 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.260 1.260 18 C 0.119 3.881 19 C -0.129 4.129 20 C -0.093 4.093 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.154 4.154 24 C 0.096 3.904 25 N -0.480 5.480 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.271 0.729 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.207 0.793 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -10.460 -5.572 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.146 5.854 3 C -0.150 4.150 4 C -0.124 4.124 5 C -0.082 4.082 6 C 0.347 3.653 7 O -0.433 6.433 8 N -0.306 5.306 9 C 0.058 3.942 10 C -0.586 4.586 11 H 0.102 0.898 12 C -0.124 4.124 13 N -0.511 5.511 14 Si 0.684 3.316 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.185 1.185 18 C -0.004 4.004 19 C -0.168 4.168 20 C -0.112 4.112 21 C -0.206 4.206 22 C -0.202 4.202 23 C -0.175 4.175 24 C -0.063 4.063 25 N -0.194 5.194 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.160 0.840 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.223 0.777 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.694 -11.922 -5.266 13.143 hybrid contribution -0.698 1.723 -0.799 2.023 sum 0.996 -10.199 -6.065 11.908 Atomic orbital electron populations 1.23390 0.93902 1.05623 1.06656 1.85364 1.07612 0.99762 1.92675 1.22684 0.91687 0.97966 1.02679 1.21624 0.95758 0.95614 0.99386 1.20281 0.94617 0.93343 0.99948 1.18070 0.87109 0.81448 0.78690 1.90698 1.49651 1.56966 1.45993 1.47757 1.07877 1.17815 1.57117 1.20681 0.87300 0.90301 0.95886 1.21325 1.22012 1.11228 1.04049 0.89775 1.24909 0.96393 0.94610 0.96442 1.69880 1.31503 1.15403 1.34302 0.87098 0.81172 0.78724 0.84588 1.19100 1.20349 1.18475 1.21474 0.80879 1.00187 0.97860 1.22015 0.94711 1.01440 0.98621 1.21036 0.94622 1.00383 0.95195 1.21891 0.99459 1.00562 0.98641 1.21823 1.00297 1.01159 0.96930 1.24325 0.92330 1.06280 0.94552 1.22747 0.96709 0.90752 0.96093 1.67770 1.35116 1.03276 1.13193 0.89618 0.88249 0.89554 0.83977 0.94761 0.92963 0.91878 0.89683 0.90320 0.91865 0.91952 0.91055 0.93214 0.92024 0.92786 0.92854 0.92951 0.92883 0.77736 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 10.01 101.05 1.01 -0.33 16 2 S -0.09 -1.23 22.55 -107.50 -2.42 -3.65 16 3 C 0.10 1.64 7.00 -16.97 -0.12 1.52 16 4 C -0.10 -1.72 9.43 -38.77 -0.37 -2.09 16 5 C -0.07 -1.35 5.60 -104.68 -0.59 -1.93 16 6 C 0.56 11.56 7.47 -12.19 -0.09 11.47 16 7 O -0.55 -12.23 16.41 5.36 0.09 -12.14 16 8 N -0.58 -11.50 2.47 -176.06 -0.44 -11.93 16 9 C 0.18 3.75 3.70 -5.20 -0.02 3.73 16 10 C -0.55 -13.35 8.06 -34.44 -0.28 -13.63 16 11 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 12 C 0.08 2.05 5.33 -17.82 -0.09 1.96 16 13 N -0.88 -23.62 13.96 55.43 0.77 -22.84 16 14 Si 0.86 18.18 27.32 -169.99 -4.64 13.54 16 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 18 C 0.12 2.07 5.29 -4.05 -0.02 2.05 16 19 C -0.13 -1.92 4.96 -26.73 -0.13 -2.05 16 20 C -0.09 -1.15 2.91 -90.62 -0.26 -1.42 16 21 C -0.15 -1.81 9.06 37.16 0.34 -1.48 16 22 C -0.14 -1.56 9.19 37.16 0.34 -1.21 16 23 C -0.15 -2.96 7.59 -39.01 -0.30 -3.25 16 24 C 0.10 1.68 11.16 -17.63 -0.20 1.48 16 25 N -0.48 -8.20 9.40 -12.16 -0.11 -8.31 16 26 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 27 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.14 2.38 7.98 -52.49 -0.42 1.96 16 30 H 0.03 0.71 7.19 -51.93 -0.37 0.34 16 31 H 0.05 1.08 3.52 -51.93 -0.18 0.90 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 34 H 0.08 1.41 5.67 -51.93 -0.29 1.11 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.21 4.33 2.97 -52.49 -0.16 4.18 16 45 H 0.16 2.47 8.06 -52.48 -0.42 2.04 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -27.54 375.30 -8.71 -36.25 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.83 Total: 8.62 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.77 Total: -5.18 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.22 Total: -43.09 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -4.64 Total: 13.54 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.42 Total: -3.65 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.54 -8.71 -36.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.141 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds