Wall clock time and date at job start Tue Mar 31 2020 13:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76207 * 102.99999 * 2 1 4 4 C 1.39176 * 119.64910 * 179.97438 * 3 2 1 5 5 C 1.39476 * 118.92553 * 180.27129 * 4 3 2 6 6 C 1.48160 * 120.87717 * 179.74746 * 5 4 3 7 7 O 1.21511 * 120.00089 * 330.34594 * 6 5 4 8 8 N 1.34771 * 120.00036 * 150.35522 * 6 5 4 9 9 C 1.46497 * 119.99959 * 6.01170 * 8 6 5 10 10 C 1.50698 * 109.47466 * 97.84772 * 9 8 6 11 11 H 1.08001 * 119.99485 * 359.97438 * 10 9 8 12 12 C 1.37868 * 120.00320 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00057 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00112 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47307 * 89.99999 * 14 12 10 16 16 H 1.48508 * 109.47162 * 210.00465 * 14 12 10 17 17 H 1.48497 * 109.47034 * 329.99775 * 14 12 10 18 18 C 1.46496 * 120.00059 * 186.01483 * 8 6 5 19 19 C 1.52996 * 109.47244 * 85.14065 * 18 8 6 20 20 C 1.53009 * 109.47223 * 184.46859 * 19 18 8 21 21 C 1.52997 * 109.47268 * 65.93445 * 20 19 18 22 22 C 1.52996 * 109.46900 * 185.93568 * 20 19 18 23 23 C 1.40051 * 118.24123 * 359.51353 * 5 4 3 24 24 C 1.37942 * 119.18349 * 0.48868 * 23 5 4 25 25 N 1.31910 * 121.01257 * 359.74519 * 24 23 5 26 26 H 1.09005 * 109.46733 * 60.00027 * 1 2 3 27 27 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46923 * 300.00687 * 1 2 3 29 29 H 1.07999 * 120.53886 * 359.97438 * 4 3 2 30 30 H 1.09007 * 109.47194 * 217.84558 * 9 8 6 31 31 H 1.09000 * 109.47162 * 337.84464 * 9 8 6 32 32 H 0.97005 * 119.99810 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.47329 * 205.14019 * 18 8 6 34 34 H 1.09001 * 109.47312 * 325.13645 * 18 8 6 35 35 H 1.09005 * 109.47106 * 304.46237 * 19 18 8 36 36 H 1.08998 * 109.47631 * 64.46432 * 19 18 8 37 37 H 1.09003 * 109.46496 * 305.93324 * 20 19 18 38 38 H 1.08998 * 109.47084 * 184.46966 * 21 20 19 39 39 H 1.09006 * 109.47251 * 304.46927 * 21 20 19 40 40 H 1.09002 * 109.47282 * 64.46854 * 21 20 19 41 41 H 1.08998 * 109.47717 * 59.99811 * 22 20 19 42 42 H 1.09003 * 109.46940 * 179.97438 * 22 20 19 43 43 H 1.08995 * 109.47519 * 299.99568 * 22 20 19 44 44 H 1.07996 * 120.40242 * 180.26328 * 23 5 4 45 45 H 1.08004 * 119.49719 * 179.77521 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5438 2.1157 0.0005 5 6 3.8404 3.4785 0.0063 6 6 5.2446 3.9511 0.0127 7 8 6.1104 3.2763 0.5339 8 7 5.5617 5.1294 -0.5594 9 6 4.5032 6.0040 -1.0702 10 6 4.1902 7.0647 -0.0466 11 1 4.7258 7.0850 0.8910 12 6 3.2193 8.0084 -0.3064 13 7 2.9458 8.9338 0.5872 14 14 2.2923 7.9728 -1.9278 15 1 1.0803 7.1265 -1.7866 16 1 1.8914 9.3536 -2.2993 17 1 3.1684 7.4101 -2.9866 18 6 6.9648 5.5357 -0.6705 19 6 7.5730 4.9282 -1.9361 20 6 9.0655 5.2598 -1.9946 21 6 9.7896 4.5571 -0.8445 22 6 9.6423 4.7814 -3.3285 23 6 2.7758 4.3884 0.0009 24 6 1.4820 3.9099 0.0003 25 7 1.2367 2.6138 -0.0002 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.3361 1.3817 0.0014 30 1 4.8371 6.4775 -1.9936 31 1 3.6081 5.4140 -1.2676 32 1 2.2629 9.5980 0.4042 33 1 7.0251 6.6228 -0.7241 34 1 7.5151 5.1839 0.2021 35 1 7.4416 3.8462 -1.9191 36 1 7.0744 5.3410 -2.8131 37 1 9.2020 6.3376 -1.9054 38 1 10.8378 4.8559 -0.8384 39 1 9.3264 4.8373 0.1017 40 1 9.7203 3.4774 -0.9772 41 1 9.1265 5.2820 -4.1479 42 1 10.7055 5.0181 -3.3703 43 1 9.5059 3.7037 -3.4178 44 1 2.9655 5.4516 0.0008 45 1 0.6571 4.6071 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103439996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:38 Heat of formation + Delta-G solvation = -9.039860 kcal Electronic energy + Delta-G solvation = -25384.062685 eV Core-core repulsion = 21913.621876 eV Total energy + Delta-G solvation = -3470.440809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87665 -40.18909 -37.91749 -36.83254 -34.62334 -33.89799 -32.50749 -30.86895 -29.75299 -29.48410 -28.02092 -26.11813 -25.02619 -24.43196 -23.81780 -21.08543 -20.83740 -19.12465 -19.00434 -18.09583 -17.38597 -17.17811 -16.70222 -16.46591 -16.13366 -15.92484 -15.56647 -15.33029 -15.09280 -14.82978 -14.65645 -14.59586 -14.36966 -14.19200 -13.93030 -13.72033 -13.25344 -13.15327 -12.94584 -12.78206 -12.67197 -12.30878 -12.20363 -12.14862 -11.82139 -11.69319 -11.57173 -11.53738 -11.45099 -11.35069 -11.09258 -10.87910 -10.77705 -10.46340 -9.55736 -8.58322 -8.36527 -6.46057 -0.37525 -0.12020 0.38311 1.30268 1.37317 1.41326 1.49189 1.68245 2.04229 2.28850 2.59324 2.95613 3.29328 3.50949 3.89297 3.90525 3.92943 3.93903 4.04887 4.20958 4.33689 4.35353 4.41020 4.50648 4.54482 4.56488 4.63806 4.69026 4.76083 4.82545 4.84525 4.92415 4.94982 5.00812 5.09899 5.10617 5.12447 5.29572 5.33135 5.43170 5.46587 5.49068 5.62059 6.07090 6.44966 6.55229 6.61953 7.02036 7.19825 8.78454 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.005090 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.743581 B = 5499.819696 C = 8021.325822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.077 6.077 3 C 0.096 3.904 4 C -0.104 4.104 5 C -0.082 4.082 6 C 0.553 3.447 7 O -0.575 6.575 8 N -0.580 5.580 9 C 0.188 3.812 10 C -0.544 4.544 11 H 0.035 0.965 12 C 0.037 3.963 13 N -0.926 5.926 14 Si 0.918 3.082 15 H -0.246 1.246 16 H -0.282 1.282 17 H -0.243 1.243 18 C 0.115 3.885 19 C -0.118 4.118 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.172 4.172 24 C 0.102 3.898 25 N -0.478 5.478 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.273 0.727 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.187 0.813 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -12.206 -7.670 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.161 5.839 3 C -0.152 4.152 4 C -0.130 4.130 5 C -0.094 4.094 6 C 0.342 3.658 7 O -0.457 6.457 8 N -0.308 5.308 9 C 0.067 3.933 10 C -0.582 4.582 11 H 0.054 0.946 12 C -0.165 4.165 13 N -0.564 5.564 14 Si 0.739 3.261 15 H -0.169 1.169 16 H -0.207 1.207 17 H -0.166 1.166 18 C -0.007 4.007 19 C -0.156 4.156 20 C -0.110 4.110 21 C -0.204 4.204 22 C -0.198 4.198 23 C -0.194 4.194 24 C -0.057 4.057 25 N -0.192 5.192 26 H 0.105 0.895 27 H 0.150 0.850 28 H 0.103 0.897 29 H 0.166 0.834 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.204 0.796 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.658 -13.688 -7.372 15.561 hybrid contribution -0.373 2.146 -0.023 2.178 sum 0.284 -11.542 -7.395 13.710 Atomic orbital electron populations 1.23548 0.91276 1.07736 1.06615 1.85397 1.10377 0.96370 1.91752 1.23215 0.91321 0.99946 1.00742 1.21728 0.96692 0.94953 0.99629 1.20269 0.93792 0.94371 1.01009 1.18378 0.87726 0.81445 0.78285 1.90668 1.50462 1.57610 1.46943 1.47859 1.08629 1.17544 1.56783 1.20541 0.88221 0.89642 0.94926 1.21291 1.21462 1.12416 1.03004 0.94626 1.25656 0.97077 0.93825 0.99934 1.70022 1.32801 1.16731 1.36831 0.86152 0.80722 0.78879 0.80318 1.16943 1.20735 1.16604 1.21616 0.79917 1.00082 0.99111 1.21916 0.96451 1.00270 0.96979 1.21048 0.92775 1.00804 0.96402 1.21871 1.00529 1.00252 0.97726 1.21784 1.01241 1.01072 0.95679 1.24051 0.93274 1.05151 0.96876 1.23036 0.96437 0.91444 0.94805 1.67912 1.34921 1.03022 1.13340 0.89485 0.85021 0.89711 0.83422 0.93814 0.91553 0.91759 0.90107 0.91292 0.93082 0.91492 0.90508 0.91206 0.93794 0.93255 0.92361 0.91318 0.92985 0.79638 0.79978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 10.01 113.37 1.14 -1.04 16 2 S -0.08 -1.86 22.55 -56.49 -1.27 -3.13 16 3 C 0.10 3.05 7.00 84.84 0.59 3.64 16 4 C -0.10 -3.61 9.43 22.79 0.21 -3.40 16 5 C -0.08 -3.21 5.60 -19.90 -0.11 -3.32 16 6 C 0.55 23.49 7.47 86.88 0.65 24.14 16 7 O -0.57 -26.21 16.41 -3.75 -0.06 -26.27 16 8 N -0.58 -23.74 2.47 -829.24 -2.05 -25.79 16 9 C 0.19 7.91 3.70 85.63 0.32 8.23 16 10 C -0.54 -27.41 8.06 25.60 0.21 -27.20 16 11 H 0.04 2.10 8.06 -2.91 -0.02 2.07 16 12 C 0.04 1.86 5.33 84.65 0.45 2.31 16 13 N -0.93 -51.58 13.96 21.44 0.30 -51.28 16 14 Si 0.92 36.72 27.32 68.60 1.87 38.59 16 15 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 16 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 17 H -0.24 -8.96 6.54 99.48 0.65 -8.31 16 18 C 0.11 4.14 5.29 86.38 0.46 4.59 16 19 C -0.12 -3.47 4.96 30.60 0.15 -3.32 16 20 C -0.09 -2.17 2.91 -10.79 -0.03 -2.20 16 21 C -0.15 -3.52 9.06 71.98 0.65 -2.87 16 22 C -0.14 -2.74 9.19 71.98 0.66 -2.08 16 23 C -0.17 -6.58 7.59 22.64 0.17 -6.41 16 24 C 0.10 3.40 11.16 84.61 0.94 4.34 16 25 N -0.48 -15.37 9.40 -192.38 -1.81 -17.18 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.15 4.89 7.98 -2.91 -0.02 4.87 16 30 H 0.04 1.77 7.19 -2.38 -0.02 1.75 16 31 H 0.07 2.70 3.52 -2.39 -0.01 2.69 16 32 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 33 H 0.08 2.93 8.04 -2.38 -0.02 2.91 16 34 H 0.07 2.61 5.67 -2.39 -0.01 2.59 16 35 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 1.19 6.32 -2.38 -0.02 1.18 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.19 7.95 2.97 -2.91 -0.01 7.94 16 45 H 0.18 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -61.19 375.30 4.37 -56.82 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.93 Total: 32.82 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.46 Total: -4.58 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -3.56 Total: -94.25 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.06 Total: -26.27 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 1.87 Total: 38.59 kcal Atomic # 16 Polarization: -1.86 SS G_CDS: -1.27 Total: -3.13 kcal Total: -61.19 4.37 -56.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.782 kcal (2) G-P(sol) polarization free energy of solvation -61.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds