Wall clock time and date at job start Tue Mar 31 2020 13:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76194 * 103.00139 * 2 1 4 4 C 1.39183 * 119.65411 * 179.97438 * 3 2 1 5 5 C 1.39463 * 118.93073 * 180.27732 * 4 3 2 6 6 C 1.48166 * 120.88009 * 179.74397 * 5 4 3 7 7 O 1.21510 * 120.00010 * 330.32429 * 6 5 4 8 8 N 1.34771 * 119.99934 * 150.31865 * 6 5 4 9 9 C 1.46506 * 120.00466 * 6.09941 * 8 6 5 10 10 C 1.50702 * 109.46861 * 97.81139 * 9 8 6 11 11 H 1.07999 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99713 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00151 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47069 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47174 * 120.00493 * 14 12 10 17 17 H 1.48504 * 109.46938 * 240.00711 * 14 12 10 18 18 C 1.46507 * 120.00124 * 186.10323 * 8 6 5 19 19 C 1.52996 * 109.47195 * 87.71670 * 18 8 6 20 20 C 1.52996 * 109.47413 * 64.43000 * 19 18 8 21 21 C 1.52995 * 109.47214 * 184.43478 * 19 18 8 22 22 C 1.53006 * 109.46965 * 304.43294 * 19 18 8 23 23 C 1.40050 * 118.24476 * 359.50681 * 5 4 3 24 24 C 1.37953 * 119.18272 * 0.49372 * 23 5 4 25 25 N 1.31915 * 121.00507 * 359.74696 * 24 23 5 26 26 H 1.09002 * 109.46533 * 59.99937 * 1 2 3 27 27 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46962 * 300.00036 * 1 2 3 29 29 H 1.08006 * 120.53215 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.47381 * 217.81608 * 9 8 6 31 31 H 1.09000 * 109.46450 * 337.82151 * 9 8 6 32 32 H 0.97001 * 119.99857 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.47209 * 207.71748 * 18 8 6 34 34 H 1.09000 * 109.46399 * 327.71415 * 18 8 6 35 35 H 1.09004 * 109.46804 * 60.00217 * 20 19 18 36 36 H 1.08999 * 109.47276 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47537 * 300.00162 * 20 19 18 38 38 H 1.09001 * 109.47381 * 59.99713 * 21 19 18 39 39 H 1.08999 * 109.47605 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.47023 * 299.99795 * 21 19 18 41 41 H 1.09002 * 109.47271 * 65.00966 * 22 19 18 42 42 H 1.09000 * 109.46989 * 185.01362 * 22 19 18 43 43 H 1.08998 * 109.47135 * 305.00699 * 22 19 18 44 44 H 1.07995 * 120.40957 * 180.26424 * 23 5 4 45 45 H 1.08001 * 119.49585 * 179.76480 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5439 2.1156 0.0005 5 6 3.8404 3.4783 0.0064 6 6 5.2447 3.9510 0.0129 7 8 6.1104 3.2764 0.5345 8 7 5.5618 5.1290 -0.5597 9 6 4.5034 6.0043 -1.0696 10 6 4.1916 7.0648 -0.0453 11 1 4.7285 7.0851 0.8916 12 6 3.2217 8.0097 -0.3046 13 7 2.5683 7.9853 -1.4456 14 14 2.8358 9.3247 0.9648 15 1 3.7043 9.1345 2.1543 16 1 3.0857 10.6663 0.3794 17 1 1.4109 9.2189 1.3696 18 6 6.9652 5.5345 -0.6725 19 6 7.5536 4.9796 -1.9712 20 6 6.8392 5.6133 -3.1665 21 6 9.0463 5.3085 -2.0362 22 6 7.3636 3.4618 -2.0095 23 6 2.7759 4.3883 0.0010 24 6 1.4820 3.9099 0.0004 25 7 1.2368 2.6138 -0.0001 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.3361 1.3816 0.0014 30 1 4.8368 6.4778 -1.9930 31 1 3.6079 5.4147 -1.2662 32 1 1.8857 8.6500 -1.6279 33 1 7.0295 6.6225 -0.6802 34 1 7.5256 5.1434 0.1767 35 1 6.9745 6.6945 -3.1392 36 1 7.2587 5.2183 -4.0917 37 1 5.7757 5.3789 -3.1203 38 1 9.5554 4.8570 -1.1846 39 1 9.4655 4.9136 -2.9616 40 1 9.1817 6.3897 -2.0088 41 1 6.2995 3.2298 -2.0530 42 1 7.8604 3.0557 -2.8906 43 1 7.7958 3.0188 -1.1123 44 1 2.9656 5.4515 0.0010 45 1 0.6572 4.6072 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104627678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:42 Heat of formation + Delta-G solvation = 6.492217 kcal Electronic energy + Delta-G solvation = -26109.504027 eV Core-core repulsion = 22639.736739 eV Total energy + Delta-G solvation = -3469.767288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.35983 -38.85238 -36.67462 -34.90891 -32.59697 -32.12541 -30.89195 -28.85519 -27.91757 -26.99338 -26.82594 -26.23895 -23.91273 -23.13360 -22.71407 -19.86133 -18.41505 -17.44699 -16.79551 -16.44368 -15.78501 -15.64519 -15.15791 -14.91126 -14.66353 -14.35110 -14.13366 -13.88414 -13.72810 -13.41973 -13.20823 -12.99539 -12.81730 -12.65308 -12.43013 -12.11677 -11.88997 -11.79340 -11.29776 -11.21325 -11.10436 -11.04259 -10.77142 -10.60054 -10.45275 -10.34579 -10.29852 -10.16644 -9.86213 -9.66964 -9.45480 -9.37843 -8.93733 -8.64383 -7.80389 -7.34328 -6.38966 -4.49004 1.21815 1.39795 1.61627 2.37843 3.10706 3.20989 3.24591 3.37606 3.73307 4.13742 4.21893 4.87068 4.91720 5.03997 5.14934 5.16542 5.19753 5.23735 5.31127 5.39746 5.47314 5.80081 5.80717 5.83801 5.88402 5.93669 6.02950 6.08719 6.15227 6.17125 6.25133 6.28864 6.34959 6.44792 6.52250 6.55461 6.69088 6.74210 6.80098 7.06664 7.07482 7.38996 7.56632 7.82066 8.05180 8.18052 8.59892 8.83115 9.19658 10.64974 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009226 B = 0.005518 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.014480 B = 5072.893136 C = 7432.530797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.096 6.096 3 C 0.095 3.905 4 C -0.098 4.098 5 C -0.073 4.073 6 C 0.558 3.442 7 O -0.558 6.558 8 N -0.579 5.579 9 C 0.202 3.798 10 C -0.546 4.546 11 H 0.067 0.933 12 C 0.070 3.930 13 N -0.880 5.880 14 Si 0.895 3.105 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.279 1.279 18 C 0.131 3.869 19 C -0.084 4.084 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.145 4.145 24 C 0.097 3.903 25 N -0.482 5.482 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.269 0.731 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.213 0.787 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 -8.026 -1.351 8.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.141 5.859 3 C -0.153 4.153 4 C -0.125 4.125 5 C -0.086 4.086 6 C 0.346 3.654 7 O -0.439 6.439 8 N -0.307 5.307 9 C 0.083 3.917 10 C -0.584 4.584 11 H 0.085 0.915 12 C -0.135 4.135 13 N -0.516 5.516 14 Si 0.722 3.278 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.205 1.205 18 C 0.007 3.993 19 C -0.086 4.086 20 C -0.198 4.198 21 C -0.193 4.193 22 C -0.190 4.190 23 C -0.166 4.166 24 C -0.062 4.062 25 N -0.195 5.195 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.158 0.842 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.229 0.771 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.188 -9.561 -1.211 9.710 hybrid contribution -0.421 2.340 0.509 2.431 sum 0.766 -7.221 -0.702 7.295 Atomic orbital electron populations 1.23372 0.93975 1.05517 1.06614 1.85324 1.07550 1.00129 1.92859 1.22620 0.91711 0.97802 1.03179 1.21595 0.95655 0.95660 0.99566 1.20307 0.94774 0.93281 1.00214 1.18034 0.86995 0.81556 0.78790 1.90675 1.49585 1.57082 1.46527 1.47989 1.07982 1.18008 1.56732 1.20445 0.86359 0.89261 0.95663 1.21515 1.21065 1.12403 1.03428 0.91520 1.24987 0.95559 0.97374 0.95620 1.69933 1.23725 1.35497 1.22481 0.86461 0.78521 0.81337 0.81463 1.19448 1.20635 1.20517 1.21413 0.81607 0.99896 0.96343 1.20957 0.95170 0.96190 0.96241 1.21960 1.01192 1.00359 0.96325 1.21781 0.94900 1.01273 1.01388 1.21859 1.01431 0.94555 1.01200 1.24410 0.92143 1.06511 0.93510 1.22732 0.96841 0.90543 0.96119 1.67751 1.35138 1.03384 1.13206 0.89617 0.88349 0.89646 0.84228 0.93708 0.92022 0.92110 0.89990 0.90867 0.92585 0.93615 0.91687 0.92748 0.92871 0.92661 0.93249 0.93832 0.91794 0.77066 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 10.01 101.05 1.01 -0.38 16 2 S -0.10 -1.34 22.55 -107.50 -2.42 -3.76 16 3 C 0.10 1.65 7.00 -16.96 -0.12 1.53 16 4 C -0.10 -1.79 9.43 -38.77 -0.37 -2.16 16 5 C -0.07 -1.45 5.60 -104.68 -0.59 -2.04 16 6 C 0.56 11.53 5.66 -12.19 -0.07 11.46 16 7 O -0.56 -12.18 14.57 5.36 0.08 -12.11 16 8 N -0.58 -11.52 2.01 -176.05 -0.35 -11.88 16 9 C 0.20 4.38 3.92 -5.19 -0.02 4.36 16 10 C -0.55 -12.86 7.50 -34.44 -0.26 -13.11 16 11 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.07 1.66 5.31 -17.82 -0.09 1.57 16 13 N -0.88 -21.80 13.29 55.43 0.74 -21.06 16 14 Si 0.90 19.00 29.54 -169.99 -5.02 13.98 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 C 0.13 2.31 4.60 -4.04 -0.02 2.30 16 19 C -0.08 -1.30 0.85 -154.51 -0.13 -1.43 16 20 C -0.14 -2.18 7.52 37.16 0.28 -1.90 16 21 C -0.14 -1.73 8.47 37.16 0.31 -1.41 16 22 C -0.13 -2.13 7.08 37.16 0.26 -1.86 16 23 C -0.14 -2.86 7.59 -39.01 -0.30 -3.15 16 24 C 0.10 1.75 11.16 -17.62 -0.20 1.55 16 25 N -0.48 -8.49 9.40 -12.16 -0.11 -8.61 16 26 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.14 2.43 7.99 -52.48 -0.42 2.01 16 30 H 0.05 1.02 5.94 -51.93 -0.31 0.71 16 31 H 0.06 1.39 4.09 -51.93 -0.21 1.18 16 32 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 33 H 0.08 1.45 8.05 -51.93 -0.42 1.04 16 34 H 0.07 1.32 7.41 -51.93 -0.38 0.94 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 1.14 5.93 -51.93 -0.31 0.83 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.87 6.55 -51.93 -0.34 0.53 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 1.09 7.17 -51.93 -0.37 0.71 16 44 H 0.21 4.60 3.11 -52.49 -0.16 4.44 16 45 H 0.16 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -25.72 368.07 -8.54 -34.26 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.70 Total: 8.32 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.29 Total: -4.68 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.27 Total: -41.55 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.42 Total: -3.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -25.72 -8.54 -34.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104627678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.751 kcal (2) G-P(sol) polarization free energy of solvation -25.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds