Wall clock time and date at job start Tue Mar 31 2020 13:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76194 * 103.00139 * 2 1 4 4 C 1.39183 * 119.65411 * 179.97438 * 3 2 1 5 5 C 1.39463 * 118.93073 * 180.27732 * 4 3 2 6 6 C 1.48166 * 120.88009 * 179.74397 * 5 4 3 7 7 O 1.21510 * 120.00010 * 330.32429 * 6 5 4 8 8 N 1.34771 * 119.99934 * 150.31865 * 6 5 4 9 9 C 1.46506 * 120.00466 * 6.09941 * 8 6 5 10 10 C 1.50702 * 109.46861 * 97.81139 * 9 8 6 11 11 H 1.07999 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99713 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00151 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47069 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47174 * 120.00493 * 14 12 10 17 17 H 1.48504 * 109.46938 * 240.00711 * 14 12 10 18 18 C 1.46507 * 120.00124 * 186.10323 * 8 6 5 19 19 C 1.52996 * 109.47195 * 87.71670 * 18 8 6 20 20 C 1.52996 * 109.47413 * 64.43000 * 19 18 8 21 21 C 1.52995 * 109.47214 * 184.43478 * 19 18 8 22 22 C 1.53006 * 109.46965 * 304.43294 * 19 18 8 23 23 C 1.40050 * 118.24476 * 359.50681 * 5 4 3 24 24 C 1.37953 * 119.18272 * 0.49372 * 23 5 4 25 25 N 1.31915 * 121.00507 * 359.74696 * 24 23 5 26 26 H 1.09002 * 109.46533 * 59.99937 * 1 2 3 27 27 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46962 * 300.00036 * 1 2 3 29 29 H 1.08006 * 120.53215 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.47381 * 217.81608 * 9 8 6 31 31 H 1.09000 * 109.46450 * 337.82151 * 9 8 6 32 32 H 0.97001 * 119.99857 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.47209 * 207.71748 * 18 8 6 34 34 H 1.09000 * 109.46399 * 327.71415 * 18 8 6 35 35 H 1.09004 * 109.46804 * 60.00217 * 20 19 18 36 36 H 1.08999 * 109.47276 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47537 * 300.00162 * 20 19 18 38 38 H 1.09001 * 109.47381 * 59.99713 * 21 19 18 39 39 H 1.08999 * 109.47605 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.47023 * 299.99795 * 21 19 18 41 41 H 1.09002 * 109.47271 * 65.00966 * 22 19 18 42 42 H 1.09000 * 109.46989 * 185.01362 * 22 19 18 43 43 H 1.08998 * 109.47135 * 305.00699 * 22 19 18 44 44 H 1.07995 * 120.40957 * 180.26424 * 23 5 4 45 45 H 1.08001 * 119.49585 * 179.76480 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5439 2.1156 0.0005 5 6 3.8404 3.4783 0.0064 6 6 5.2447 3.9510 0.0129 7 8 6.1104 3.2764 0.5345 8 7 5.5618 5.1290 -0.5597 9 6 4.5034 6.0043 -1.0696 10 6 4.1916 7.0648 -0.0453 11 1 4.7285 7.0851 0.8916 12 6 3.2217 8.0097 -0.3046 13 7 2.5683 7.9853 -1.4456 14 14 2.8358 9.3247 0.9648 15 1 3.7043 9.1345 2.1543 16 1 3.0857 10.6663 0.3794 17 1 1.4109 9.2189 1.3696 18 6 6.9652 5.5345 -0.6725 19 6 7.5536 4.9796 -1.9712 20 6 6.8392 5.6133 -3.1665 21 6 9.0463 5.3085 -2.0362 22 6 7.3636 3.4618 -2.0095 23 6 2.7759 4.3883 0.0010 24 6 1.4820 3.9099 0.0004 25 7 1.2368 2.6138 -0.0001 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.3361 1.3816 0.0014 30 1 4.8368 6.4778 -1.9930 31 1 3.6079 5.4147 -1.2662 32 1 1.8857 8.6500 -1.6279 33 1 7.0295 6.6225 -0.6802 34 1 7.5256 5.1434 0.1767 35 1 6.9745 6.6945 -3.1392 36 1 7.2587 5.2183 -4.0917 37 1 5.7757 5.3789 -3.1203 38 1 9.5554 4.8570 -1.1846 39 1 9.4655 4.9136 -2.9616 40 1 9.1817 6.3897 -2.0088 41 1 6.2995 3.2298 -2.0530 42 1 7.8604 3.0557 -2.8906 43 1 7.7958 3.0188 -1.1123 44 1 2.9656 5.4515 0.0010 45 1 0.6572 4.6072 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104627678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:41 Heat of formation + Delta-G solvation = -4.889204 kcal Electronic energy + Delta-G solvation = -26109.997562 eV Core-core repulsion = 22639.736739 eV Total energy + Delta-G solvation = -3470.260823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88649 -40.31192 -38.12524 -36.52574 -34.37596 -33.57777 -32.33247 -29.81353 -29.58286 -28.22019 -28.11536 -27.67680 -25.52686 -24.56375 -24.35816 -21.33760 -19.74733 -18.98617 -18.56235 -17.94798 -17.26262 -17.10395 -16.70706 -16.44021 -16.22445 -15.69206 -15.44839 -15.15999 -15.01076 -14.70623 -14.62136 -14.40527 -14.18183 -14.10586 -13.74417 -13.43248 -13.16549 -13.04258 -12.83317 -12.75710 -12.54309 -12.47493 -12.20575 -12.10589 -12.01914 -11.68111 -11.58200 -11.53419 -11.48655 -11.23578 -10.98503 -10.79079 -10.64136 -10.28447 -9.44002 -8.54764 -8.23174 -6.38644 -0.28602 -0.04480 0.41724 1.32183 1.40646 1.46648 1.54888 1.79193 2.17346 2.40584 2.69652 3.05487 3.41859 3.57653 3.88377 3.90994 3.95886 4.00910 4.04867 4.33668 4.35511 4.42134 4.56213 4.57162 4.60985 4.73801 4.77863 4.81876 4.87094 4.91981 4.93172 4.95074 5.04636 5.06149 5.19179 5.22164 5.22458 5.32722 5.46315 5.52175 5.55115 5.65890 5.79961 6.00070 6.49069 6.61810 6.76052 7.17309 7.33934 8.80243 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009226 B = 0.005518 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.014480 B = 5072.893136 C = 7432.530797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.081 6.081 3 C 0.091 3.909 4 C -0.105 4.105 5 C -0.087 4.087 6 C 0.555 3.445 7 O -0.575 6.575 8 N -0.577 5.577 9 C 0.217 3.783 10 C -0.550 4.550 11 H 0.052 0.948 12 C 0.038 3.962 13 N -0.903 5.903 14 Si 0.947 3.053 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.274 1.274 18 C 0.126 3.874 19 C -0.080 4.080 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.161 4.161 24 C 0.100 3.900 25 N -0.480 5.480 26 H 0.084 0.916 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.272 0.728 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.194 0.806 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -8.917 -1.601 9.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S 0.157 5.843 3 C -0.157 4.157 4 C -0.132 4.132 5 C -0.099 4.099 6 C 0.343 3.657 7 O -0.457 6.457 8 N -0.305 5.305 9 C 0.097 3.903 10 C -0.588 4.588 11 H 0.071 0.929 12 C -0.165 4.165 13 N -0.540 5.540 14 Si 0.773 3.227 15 H -0.200 1.200 16 H -0.205 1.205 17 H -0.200 1.200 18 C 0.004 3.996 19 C -0.081 4.081 20 C -0.193 4.193 21 C -0.187 4.187 22 C -0.182 4.182 23 C -0.183 4.183 24 C -0.059 4.059 25 N -0.194 5.194 26 H 0.103 0.897 27 H 0.150 0.850 28 H 0.103 0.897 29 H 0.163 0.837 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.210 0.790 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.875 -10.449 -1.465 10.587 hybrid contribution -0.366 2.490 0.590 2.585 sum 0.509 -7.959 -0.874 8.023 Atomic orbital electron populations 1.23526 0.91338 1.07676 1.06512 1.85326 1.10330 0.96660 1.92013 1.23165 0.91388 0.99813 1.01340 1.21698 0.96538 0.95067 0.99884 1.20351 0.94277 0.94212 1.01044 1.18223 0.87397 0.81526 0.78510 1.90648 1.50175 1.57515 1.47410 1.47987 1.08585 1.17640 1.56297 1.20162 0.86564 0.88867 0.94678 1.21555 1.21042 1.13065 1.03146 0.92937 1.25492 0.95360 0.98734 0.96872 1.69995 1.24211 1.36203 1.23611 0.85660 0.78297 0.79307 0.79412 1.19989 1.20457 1.19962 1.21577 0.80537 0.99795 0.97716 1.20936 0.96980 0.95590 0.94634 1.21888 0.99646 1.00385 0.97348 1.21736 0.92472 1.02004 1.02519 1.21769 0.99910 0.94971 1.01588 1.24151 0.93062 1.05491 0.95567 1.22968 0.96588 0.91232 0.95142 1.67881 1.34990 1.03098 1.13389 0.89723 0.85003 0.89696 0.83728 0.94888 0.92607 0.91893 0.90332 0.91459 0.92690 0.91473 0.94295 0.92424 0.91033 0.91855 0.95644 0.91571 0.93062 0.78989 0.80427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 10.01 113.37 1.14 -1.21 16 2 S -0.08 -2.09 22.55 -56.49 -1.27 -3.37 16 3 C 0.09 3.08 7.00 84.84 0.59 3.67 16 4 C -0.11 -3.87 9.43 22.79 0.21 -3.66 16 5 C -0.09 -3.52 5.60 -19.90 -0.11 -3.63 16 6 C 0.56 23.67 5.66 86.88 0.49 24.16 16 7 O -0.58 -25.78 14.57 -3.75 -0.05 -25.84 16 8 N -0.58 -23.79 2.01 -829.20 -1.66 -25.46 16 9 C 0.22 9.76 3.92 85.63 0.34 10.10 16 10 C -0.55 -26.55 7.50 25.60 0.19 -26.36 16 11 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 12 C 0.04 1.85 5.31 84.66 0.45 2.30 16 13 N -0.90 -45.15 13.29 21.45 0.28 -44.87 16 14 Si 0.95 39.10 29.54 68.60 2.03 41.12 16 15 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 C 0.13 4.56 4.60 86.38 0.40 4.96 16 19 C -0.08 -2.43 0.85 -52.18 -0.04 -2.47 16 20 C -0.14 -4.13 7.52 71.98 0.54 -3.59 16 21 C -0.13 -3.06 8.47 71.98 0.61 -2.45 16 22 C -0.12 -3.95 7.08 71.98 0.51 -3.44 16 23 C -0.16 -6.52 7.59 22.64 0.17 -6.35 16 24 C 0.10 3.58 11.16 84.61 0.94 4.52 16 25 N -0.48 -16.50 9.40 -192.38 -1.81 -18.31 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 27 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.14 5.07 7.99 -2.91 -0.02 5.05 16 30 H 0.03 1.56 5.94 -2.39 -0.01 1.54 16 31 H 0.06 2.63 4.09 -2.39 -0.01 2.62 16 32 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 33 H 0.08 2.85 8.05 -2.39 -0.02 2.83 16 34 H 0.07 2.49 7.41 -2.39 -0.02 2.47 16 35 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.38 5.93 -2.39 -0.01 1.36 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.02 0.90 6.55 -2.39 -0.02 0.88 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 1.74 7.17 -2.39 -0.02 1.72 16 44 H 0.19 8.66 3.11 -2.91 -0.01 8.65 16 45 H 0.18 5.62 8.06 -2.91 -0.02 5.59 16 Total: -1.00 -55.18 368.07 4.93 -50.24 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.99 Total: 29.91 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 6.43 Total: -3.44 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -3.19 Total: -88.63 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -1.27 Total: -3.37 kcal Total: -55.18 4.93 -50.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104627678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.355 kcal (2) G-P(sol) polarization free energy of solvation -55.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds